=> Building biology/p5-Bio-Graphics Started : Wednesday, 18 APR 2018 at 02:13:13 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.81.g32506c-DEVELOPMENT #29: Tue Apr 10 08:49:52 PDT 2018 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.0-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.0-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/biology/p5-Bio-Graphics XDG_CONFIG_HOME=/construction/biology/p5-Bio-Graphics HOME=/construction/biology/p5-Bio-Graphics TMPDIR="/tmp" PATH=/construction/biology/p5-Bio-Graphics/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 PERL_EXTUTILS_AUTOINSTALL="--skipdeps" PERL_MM_USE_DEFAULT="YES" -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- --install_path lib="/usr/local/lib/perl5/site_perl" --install_path arch="/usr/local/lib/perl5/site_perl/mach/5.26" --install_path script="/usr/local/bin" --install_path bin="/usr/local/bin" --install_path libdoc="/usr/local/lib/perl5/site_perl/man/man3" --install_path bindoc="/usr/local/lib/perl5/site_perl/man/man1" --destdir /construction/biology/p5-Bio-Graphics/stage --perl="/usr/local/bin/perl" --create_packlist 1 CC="cc" CCFLAGS="-pipe -O2 -fno-strict-aliasing" LD="cc" PREFIX="/usr/local" INSTALLPRIVLIB="/usr/local/lib" INSTALLARCHLIB="/usr/local/lib" -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/biology/p5-Bio-Graphics XDG_CONFIG_HOME=/construction/biology/p5-Bio-Graphics HOME=/construction/biology/p5-Bio-Graphics TMPDIR="/tmp" PATH=/construction/biology/p5-Bio-Graphics/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- --destdir=/construction/biology/p5-Bio-Graphics/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" OSREL=5.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.26.1 PERL_VER=5.26 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.26 PROFILE="@comment " DOCSDIR="share/doc/Bio-Graphics" EXAMPLESDIR="share/examples/Bio-Graphics" DATADIR="share/Bio-Graphics" WWWDIR="www/Bio-Graphics" ETCDIR="etc/Bio-Graphics" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/Bio-Graphics DOCSDIR=/usr/local/share/doc/Bio-Graphics EXAMPLESDIR=/usr/local/share/examples/Bio-Graphics WWWDIR=/usr/local/www/Bio-Graphics ETCDIR=/usr/local/etc/Bio-Graphics -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.0 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500000 OSVERSION=9999999 OSREL=5.0 _OSRELEASE=5.0-SYNTH -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License ART10 GPLv1+ accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> p5-Bio-Graphics-2.40_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5.txz Installing pkg-1.10.5... Extracting pkg-1.10.5: .......... done ===> p5-Bio-Graphics-2.40_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of p5-Bio-Graphics-2.40_2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License ART10 GPLv1+ accepted by the user ===> Fetching all distfiles required by p5-Bio-Graphics-2.40_2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License ART10 GPLv1+ accepted by the user ===> Fetching all distfiles required by p5-Bio-Graphics-2.40_2 for building => SHA256 Checksum OK for Bio-Graphics-2.40.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License ART10 GPLv1+ accepted by the user ===> Fetching all distfiles required by p5-Bio-Graphics-2.40_2 for building ===> Extracting for p5-Bio-Graphics-2.40_2 => SHA256 Checksum OK for Bio-Graphics-2.40.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for p5-Bio-Graphics-2.40_2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-Coordinate>=1.007000 - not found ===> Installing existing package /packages/All/p5-Bio-Coordinate-1.007001.txz Installing p5-Bio-Coordinate-1.007001... `-- Installing p5-BioPerl-1.007002... | `-- Installing p5-Algorithm-Munkres-0.08_1... | | `-- Installing perl5-5.26.1... | | `-- Extracting perl5-5.26.1: .......... done | `-- Extracting p5-Algorithm-Munkres-0.08_1: ... done | `-- Installing p5-Array-Compare-3.0.1... | | `-- Installing p5-Moo-2.003004... | | `-- Installing p5-Class-Method-Modifiers-2.12... | | `-- Extracting p5-Class-Method-Modifiers-2.12: ....... done | | `-- Installing p5-Devel-GlobalDestruction-0.14... | | | `-- Installing p5-Sub-Exporter-Progressive-0.001013... | | | `-- Installing p5-Sub-Exporter-0.987_1... | | | | `-- Installing p5-Data-OptList-0.110... | | | | `-- Installing p5-Params-Util-1.07_2... | | | | `-- Extracting p5-Params-Util-1.07_2: ........ done | | | | `-- Installing p5-Sub-Install-0.928_1... | | | | `-- Extracting p5-Sub-Install-0.928_1: ....... done | | | | `-- Extracting p5-Data-OptList-0.110: ....... done | | | `-- Extracting p5-Sub-Exporter-0.987_1: .......... done | | | `-- Extracting p5-Sub-Exporter-Progressive-0.001013: ....... done | | `-- Extracting p5-Devel-GlobalDestruction-0.14: ....... done | | `-- Installing p5-Module-Runtime-0.016... | | `-- Extracting p5-Module-Runtime-0.016: ....... done | | `-- Installing p5-Role-Tiny-2.000006... | | `-- Extracting p5-Role-Tiny-2.000006: ......... done | | `-- Installing p5-Sub-Quote-2.005000... | | `-- Extracting p5-Sub-Quote-2.005000: ......... done | | `-- Extracting p5-Moo-2.003004: .......... done | | `-- Installing p5-Type-Tiny-1.002001... | | `-- Installing p5-Devel-StackTrace-2.03... | 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Extracting p5-Clone-0.39: ......... done | `-- Installing p5-Convert-Binary-C-0.78... | `-- Extracting p5-Convert-Binary-C-0.78: .......... done | `-- Installing p5-DBD-mysql-4.046... | | `-- Installing mysql56-client-5.6.39_1... | | `-- Installing libedit-3.1.20170329_2,1... | | | `-- Installing ncurses-6.0.0s20171223_1... | | | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | | `-- Extracting libedit-3.1.20170329_2,1: .......... done | | `-- Installing libevent-2.1.8_1... | | | `-- Installing libressl-2.6.4... | | | `-- Extracting libressl-2.6.4: .......... done | | `-- Extracting libevent-2.1.8_1: .......... done | | `-- Installing liblz4-1.8.1.2,1... | | `-- Extracting liblz4-1.8.1.2,1: .......... done | | `-- Extracting mysql56-client-5.6.39_1: .......... done | | `-- Installing p5-DBI-1.641... | | `-- Extracting p5-DBI-1.641: .......... done | `-- Extracting p5-DBD-mysql-4.046: .......... done | `-- Installing p5-Data-Stag-0.14_2... | | `-- Installing p5-IO-String-1.08_1... | | `-- Extracting p5-IO-String-1.08_1: ....... done | `-- Extracting p5-Data-Stag-0.14_2: .......... done | `-- Installing p5-Error-0.17025... | `-- Extracting p5-Error-0.17025: ......... done | `-- Installing p5-GD-2.68... | | `-- Installing libgd-2.2.4_1,1... | | `-- Installing fontconfig-2.12.1_3,1... | | | `-- Installing expat-2.2.5... | | | `-- Extracting expat-2.2.5: .......... done | | | `-- Installing freetype2-2.9_1... | | | `-- Extracting freetype2-2.9_1: .......... done | | `-- Extracting fontconfig-2.12.1_3,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | | `-- Installing jpeg-turbo-1.5.3... | | `-- Extracting jpeg-turbo-1.5.3: .......... done | | `-- Installing png-1.6.34... | | `-- Extracting png-1.6.34: .......... done | | `-- Installing tiff-4.0.9_1... | | | `-- Installing jbigkit-2.1_1... | | | `-- Extracting jbigkit-2.1_1: .......... done | | `-- Extracting tiff-4.0.9_1: .......... done | | `-- Installing webp-0.6.1... | | | `-- Installing giflib-5.1.4... | | | `-- Extracting giflib-5.1.4: .......... done | | `-- Extracting webp-0.6.1: .......... done | | `-- Extracting libgd-2.2.4_1,1: .......... done | | `-- Installing p5-ExtUtils-PkgConfig-1.16... | | `-- Installing pkgconf-1.4.2,1... | | `-- Extracting pkgconf-1.4.2,1: .......... done | | `-- Extracting p5-ExtUtils-PkgConfig-1.16: ...... done | `-- Extracting p5-GD-2.68: .......... done | `-- Installing p5-Graph-0.9704,1... | | `-- Installing p5-Heap-0.80_1... | | `-- Extracting p5-Heap-0.80_1: .......... done | `-- Extracting p5-Graph-0.9704,1: .......... done | `-- Installing p5-GraphViz-2.24... | | `-- Installing graphviz-2.40.1_4... | | `-- Installing cairo-1.14.8_1,2... | | | `-- Installing dri2proto-2.8... | | | `-- Extracting dri2proto-2.8: .... done | | | `-- Installing gettext-runtime-0.19.8.1_1... | | | `-- Installing indexinfo-0.3.1... | | | `-- Extracting indexinfo-0.3.1: .... done | | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | | | `-- Installing glib-2.50.3_1,1... | | | `-- Installing libffi-3.2.1_2... | | | `-- Extracting libffi-3.2.1_2: .......... done | | | `-- Installing libiconv-1.14_11... | | | `-- Extracting libiconv-1.14_11: .......... done | | | `-- Installing pcre-8.40_1... | | | `-- Extracting pcre-8.40_1: .......... done | | | `-- Installing python27-2.7.14_1... | | | | `-- Installing readline-7.0.3_1... | | | | `-- Extracting readline-7.0.3_1: .......... done | | | `-- Extracting python27-2.7.14_1: .......... done | | | `-- Extracting glib-2.50.3_1,1: .......... done No schema files found: doing nothing. | | | `-- Installing glproto-1.4.17... | | | `-- Extracting glproto-1.4.17: ...... done | | | `-- Installing libX11-1.6.5,1... | | | `-- Installing kbproto-1.0.7... | | | `-- Extracting kbproto-1.0.7: .......... done | | | `-- Installing libXau-1.0.8_3... | | | | `-- Installing xproto-7.0.31... | | | | `-- Extracting xproto-7.0.31: .......... done | | | `-- Extracting libXau-1.0.8_3: .......... done | | | `-- Installing libXdmcp-1.1.2... | | | `-- Extracting libXdmcp-1.1.2: ......... done | | | `-- Installing libxcb-1.12_2... | | | | `-- Installing libpthread-stubs-0.4... | | | | `-- Extracting libpthread-stubs-0.4: .... done | | | | `-- Installing libxml2-2.9.7... | | | | `-- Extracting libxml2-2.9.7: .......... done | | | `-- Extracting libxcb-1.12_2: .......... done | | | `-- Extracting libX11-1.6.5,1: .......... done | | | `-- Installing libXext-1.3.3_1,1... | | | `-- Installing xextproto-7.3.0... | | | `-- Extracting xextproto-7.3.0: .......... done | | | `-- Extracting libXext-1.3.3_1,1: .......... done | | | `-- Installing libXrender-0.9.10... | | | `-- Installing renderproto-0.11.1... | | | `-- Extracting renderproto-0.11.1: .... done | | | `-- Extracting libXrender-0.9.10: .......... done | | | `-- Installing mesa-libs-17.3.1... | | | `-- Installing libXdamage-1.1.4_3... | | | | `-- Installing damageproto-1.2.1... | | | | `-- Extracting damageproto-1.2.1: .... done | | | | `-- Installing libXfixes-5.0.3... | | | | `-- Installing fixesproto-5.0... | | | | `-- Extracting fixesproto-5.0: .... done | | | | `-- Extracting libXfixes-5.0.3: .......... done | | | `-- Extracting libXdamage-1.1.4_3: ...... done | | | `-- Installing libXxf86vm-1.1.4_1... | | | | `-- Installing xf86vidmodeproto-2.3.1... | | | | `-- Extracting xf86vidmodeproto-2.3.1: .... done | | | `-- Extracting libXxf86vm-1.1.4_1: .......... done | | | `-- Installing libdrm-2.4.89,1... | | | | `-- Installing libpciaccess-0.13.5... | | | | `-- Installing pciids-20180219... | | | | `-- Extracting pciids-20180219: ..... done | | | | `-- Extracting libpciaccess-0.13.5: ...... done | | | `-- Extracting libdrm-2.4.89,1: .......... done | | | `-- Installing libelf-0.8.13_3... | | | `-- Extracting libelf-0.8.13_3: 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p5-PostScript-0.06_2: ......... done | `-- Installing p5-SVG-2.84... | `-- Extracting p5-SVG-2.84: .......... done | `-- Installing p5-SVG-Graph-0.04_1... | | `-- Installing p5-Math-Spline-0.02_1... | | `-- Installing p5-Math-Derivative-1.01... | | `-- Extracting p5-Math-Derivative-1.01: ....... done | | `-- Extracting p5-Math-Spline-0.02_1: ....... done | | `-- Installing p5-Statistics-Descriptive-3.0609_1... | | `-- Extracting p5-Statistics-Descriptive-3.0609_1: ......... done | | `-- Installing p5-Tree-DAG_Node-1.31... | | `-- Installing p5-File-Slurp-Tiny-0.004... | | `-- Extracting p5-File-Slurp-Tiny-0.004: ....... done | | `-- Extracting p5-Tree-DAG_Node-1.31: ....... done | `-- Extracting p5-SVG-Graph-0.04_1: .......... done | `-- Installing p5-Set-Scalar-1.29... | `-- Extracting p5-Set-Scalar-1.29: .......... done | `-- Installing p5-Sort-Naturally-1.03_1... | `-- Extracting p5-Sort-Naturally-1.03_1: ....... done | `-- Installing p5-Spreadsheet-ParseExcel-0.65_2,1... | | `-- Installing p5-Crypt-RC4-2.02_1... | | `-- Extracting p5-Crypt-RC4-2.02_1: ... done | | `-- Installing p5-Digest-Perl-MD5-1.9_1... | | `-- Extracting p5-Digest-Perl-MD5-1.9_1: ... done | | `-- Installing p5-OLE-Storage_Lite-0.19_1... | | `-- Extracting p5-OLE-Storage_Lite-0.19_1: ... done | `-- Extracting p5-Spreadsheet-ParseExcel-0.65_2,1: .......... done | `-- Installing p5-XML-DOM-1.44_1... | | `-- Installing p5-XML-RegExp-0.04_1... | | `-- Extracting p5-XML-RegExp-0.04_1: ....... done | | `-- Installing p5-libxml-0.08_1... | | `-- Extracting p5-libxml-0.08_1: .......... done | `-- Extracting p5-XML-DOM-1.44_1: .......... done | `-- Installing p5-XML-DOM-XPath-0.14_1... | | `-- Installing p5-XML-XPathEngine-0.14_1... | | `-- Extracting p5-XML-XPathEngine-0.14_1: .......... done | `-- Extracting p5-XML-DOM-XPath-0.14_1: ....... done | `-- Installing p5-XML-LibXML-2.0132,1... | | `-- Installing p5-XML-NamespaceSupport-1.12... | | `-- Extracting p5-XML-NamespaceSupport-1.12: ....... done | | `-- Installing p5-XML-SAX-1.00... | | `-- Installing p5-XML-SAX-Base-1.09... | | `-- Extracting p5-XML-SAX-Base-1.09: .......... done | | `-- Extracting p5-XML-SAX-1.00: .......... done could not find ParserDetails.ini in /usr/local/lib/perl5/site_perl/XML/SAX | `-- Extracting p5-XML-LibXML-2.0132,1: .......... done | `-- Installing p5-XML-SAX-Writer-0.57... | | `-- Installing p5-XML-Filter-BufferText-1.01_1... | | `-- Extracting p5-XML-Filter-BufferText-1.01_1: ... done | `-- Extracting p5-XML-SAX-Writer-0.57: ......... done | `-- Installing p5-XML-Simple-2.25... | | `-- Installing p5-XML-SAX-Expat-0.51_1... | | `-- Extracting p5-XML-SAX-Expat-0.51_1: ....... done | `-- Extracting p5-XML-Simple-2.25: ......... done | `-- Installing p5-XML-Writer-0.625_1... | `-- Extracting p5-XML-Writer-0.625_1: ... done | `-- Installing p5-YAML-1.24... | `-- Extracting p5-YAML-1.24: .......... done `-- Extracting p5-BioPerl-1.007002: .......... done Extracting p5-Bio-Coordinate-1.007001: .......... done Message from perl5-5.26.1: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from mysql56-client-5.6.39_1: * * * * * * * * * * * * * * * * * * * * * * * * Please be aware the database client is vulnerable to CVE-2015-3152 - SSL Downgrade aka "BACKRONYM". You may find more information at the following URL: http://www.vuxml.org/freebsd/36bd352d-299b-11e5-86ff-14dae9d210b8.html Although this database client is not listed as "affected", it is vulnerable and will not be receiving a patch. Please take note of this when deploying this software. * * * * * * * * * * * * * * * * * * * * * * * * Message from freetype2-2.9_1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from python27-2.7.14_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-Coordinate>=1.007000 - found ===> Returning to build of p5-Bio-Graphics-2.40_2 ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-SCF>=1.01 - not found ===> Installing existing package /packages/All/p5-Bio-SCF-1.03_1.txz Installing p5-Bio-SCF-1.03_1... `-- Installing io_lib-1.14.9... | `-- Installing curl-7.59.0... | | `-- Installing ca_root_nss-3.36... | | `-- Extracting ca_root_nss-3.36: ........ done | | `-- Installing krb5-1.16_1... | | `-- Extracting krb5-1.16_1: .......... done | | `-- Installing libnghttp2-1.31.0... | | `-- Extracting libnghttp2-1.31.0: .......... done | `-- Extracting curl-7.59.0: .......... done `-- Extracting io_lib-1.14.9: .......... done Extracting p5-Bio-SCF-1.03_1: ..... done Message from ca_root_nss-3.36: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-SCF>=1.01 - found ===> Returning to build of p5-Bio-Graphics-2.40_2 ===> p5-Bio-Graphics-2.40_2 depends on package: p5-BioPerl>=1.007000 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-CGI>=0 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-GD>=2.30 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-GD-SVG>=0.32 - not found ===> Installing existing package /packages/All/p5-GD-SVG-0.33_6.txz Installing p5-GD-SVG-0.33_6... Extracting p5-GD-SVG-0.33_6: ....... done ===> p5-Bio-Graphics-2.40_2 depends on package: p5-GD-SVG>=0.32 - found ===> Returning to build of p5-Bio-Graphics-2.40_2 ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Statistics-Descriptive>=2.6 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Module-Build>=0.4206 - not found ===> Installing existing package /packages/All/p5-Module-Build-0.4224.txz Installing p5-Module-Build-0.4224... Extracting p5-Module-Build-0.4224: .......... done ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Module-Build>=0.4206 - found ===> Returning to build of p5-Bio-Graphics-2.40_2 ===> p5-Bio-Graphics-2.40_2 depends on package: perl5>=5.26<5.27 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for p5-Bio-Graphics-2.40_2 Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-Graphics' version '2.40' -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for p5-Bio-Graphics-2.40_2 Building Bio-Graphics -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-Coordinate>=1.007000 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-SCF>=1.01 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-BioPerl>=1.007000 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-CGI>=0 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-GD>=2.30 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-GD-SVG>=0.32 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Statistics-Descriptive>=2.6 - found ===> p5-Bio-Graphics-2.40_2 depends on package: perl5>=5.26<5.27 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for p5-Bio-Graphics-2.40_2 ===> Generating temporary packing list Building Bio-Graphics Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man1/frend.pl.1 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man1/feature_draw.pl.1 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man1/search_overview.pl.1 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man1/contig_draw.pl.1 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/RendererI.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/DrawTransmembrane.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Feature.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Util.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Pictogram.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/FeatureFile.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/FeatureDir.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Wiggle.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/FeatureBase.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/ConfiguratorI.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Layout.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Panel.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/GDWrapper.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Wiggle/Loader.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/FeatureFile/Iterator.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/box.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/smoothing.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/gene.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/pinsertion.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/arrow.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/trace.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/wave.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/toomany.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/christmas_arrow.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/redgreen_segment.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/hat.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/translation.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/ragged_ends.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/saw_teeth.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/text_in_box.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/ternary_plot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/diamond.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/wiggle_whiskers.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/wiggle_box.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/splice_site.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/graded_segments.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/phylo_align.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/scale.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/heat_map.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/tic_tac_toe.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/fb_shmiggle.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/dna.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/repeating_shape.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/hybrid_plot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/operon.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/rainbow_gene.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/decorated_gene.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/allele_tower.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/wiggle_data.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/extending_arrow.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/heat_map_ideogram.pm Installing 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/construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/pairplot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/redgreen_box.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/lightning.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/vista_plot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/track.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/fixedwidth.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/flag.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/read_pair.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/rndrect.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/merged_alignment.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/oval.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/transcript.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/span.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/triangle.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/cds.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/point_glyph.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/xyplot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/stackedplot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/minmax.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/primers.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/wiggle_density.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/ex.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/heterogeneous_segments.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/weighted_arrow.pm Installing 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/construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::FeatureDir.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::FeatureBase.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::DrawTransmembrane.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::ConfiguratorI.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Feature.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::FeatureFile.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::rndrect.3 Installing 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/construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::pairplot.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::wiggle_density.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::ternary_plot.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::vista_plot.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::so_transcript.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::operon.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::dumbbell.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::heat_map.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::FeatureFile::Iterator.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::trace.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::hat.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::three_letters.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::ex.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::tic_tac_toe.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/frend.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/contig_draw.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/glyph_help.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/coverage_to_topoview.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/search_overview.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/render_msa.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/bam_coverage_windows.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/feature_draw.pl ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for p5-Bio-Graphics-2.40_2 file sizes/checksums [226]: ... done packing files [226]: ... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Wednesday, 18 APR 2018 at 02:13:50 UTC Duration: 00:00:37