=> Building databases/R-cran-RSQLite Started : Thursday, 30 AUG 2018 at 09:35:39 UTC Platform: 5.3-DEVELOPMENT DragonFly 5.3-DEVELOPMENT #140: Wed Aug 29 22:06:30 PDT 2018 root@test.backplane.com:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.3-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.3-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/construction/databases/R-cran-RSQLite XDG_CONFIG_HOME=/construction/databases/R-cran-RSQLite HOME=/construction/databases/R-cran-RSQLite TMPDIR="/tmp" PATH=/construction/databases/R-cran-RSQLite/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/construction/databases/R-cran-RSQLite XDG_CONFIG_HOME=/construction/databases/R-cran-RSQLite HOME=/construction/databases/R-cran-RSQLite TMPDIR="/tmp" PATH=/construction/databases/R-cran-RSQLite/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="gcc6" CFLAGS="-pipe -O2 -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing" CPP="cpp6" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6" LIBS="" CXX="g++6" CXXFLAGS=" -pipe -O2 -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/databases/R-cran-RSQLite/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" R_MOD_DIR=lib/R/library/RSQLite OSREL=5.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/RSQLite" EXAMPLESDIR="share/examples/RSQLite" DATADIR="share/RSQLite" WWWDIR="www/RSQLite" ETCDIR="etc/RSQLite" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/RSQLite DOCSDIR=/usr/local/share/doc/RSQLite EXAMPLESDIR=/usr/local/share/examples/RSQLite WWWDIR=/usr/local/www/RSQLite ETCDIR=/usr/local/etc/RSQLite -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=12 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500316 OSVERSION=9999999 OSREL=5.3 _OSRELEASE=5.3-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License LGPL20 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> R-cran-RSQLite-1.0.0_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> R-cran-RSQLite-1.0.0_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-RSQLite-1.0.0_2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License LGPL20 accepted by the user ===> Fetching all distfiles required by R-cran-RSQLite-1.0.0_2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License LGPL20 accepted by the user ===> Fetching all distfiles required by R-cran-RSQLite-1.0.0_2 for building => SHA256 Checksum OK for RSQLite_1.0.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License LGPL20 accepted by the user ===> Fetching all distfiles required by R-cran-RSQLite-1.0.0_2 for building ===> Extracting for R-cran-RSQLite-1.0.0_2 => SHA256 Checksum OK for RSQLite_1.0.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for R-cran-RSQLite-1.0.0_2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> R-cran-RSQLite-1.0.0_2 depends on package: R-cran-DBI>=0.2.5 - not found ===> Installing existing package /packages/All/R-cran-DBI-1.0.0.txz Installing R-cran-DBI-1.0.0... `-- Installing R-3.5.0_1... | `-- Installing cairo-1.14.8_1,2... | | `-- Installing dri2proto-2.8... | | `-- Extracting dri2proto-2.8: ....... done | | `-- Installing fontconfig-2.12.6,1... | | `-- Installing expat-2.2.5... | | `-- Extracting expat-2.2.5: .......... done | | `-- Installing freetype2-2.9.1... | | `-- Extracting freetype2-2.9.1: .......... done | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | | `-- Installing glib-2.50.3_4,1... | | `-- Installing libffi-3.2.1_2... | | `-- Extracting libffi-3.2.1_2: .......... done | | `-- Installing libiconv-1.14_11... | | `-- Extracting libiconv-1.14_11: .......... done | | `-- Installing pcre-8.42... | | `-- Extracting pcre-8.42: .......... done | | `-- Installing perl5-5.26.2... | | `-- Extracting perl5-5.26.2: .......... done | | `-- Installing python27-2.7.15... | | | `-- Installing libressl-2.7.4... | | | `-- Extracting libressl-2.7.4: .......... done | | | `-- Installing ncurses-6.0.0s20171223_1... | | | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | | | `-- Installing readline-7.0.3_1... | | | `-- Extracting readline-7.0.3_1: .......... done | | `-- Extracting python27-2.7.15: .......... done | | `-- Extracting glib-2.50.3_4,1: .......... done No schema files found: doing nothing. | | `-- Installing glproto-1.4.17... | | `-- Extracting glproto-1.4.17: ......... done | | `-- Installing libX11-1.6.5,1... | | `-- Installing kbproto-1.0.7... | | `-- Extracting kbproto-1.0.7: .......... done | | `-- Installing libXau-1.0.8_3... | | | `-- Installing xproto-7.0.31... | | | `-- Extracting xproto-7.0.31: .......... done | | `-- Extracting libXau-1.0.8_3: .......... done | | `-- Installing libXdmcp-1.1.2... | | `-- Extracting libXdmcp-1.1.2: ......... done | | `-- Installing libxcb-1.13... | | | `-- Installing libpthread-stubs-0.4... | | | `-- Extracting libpthread-stubs-0.4: .... done | | | `-- Installing libxml2-2.9.7... | | | `-- Extracting libxml2-2.9.7: .......... done | | `-- Extracting libxcb-1.13: .......... done | | `-- Extracting libX11-1.6.5,1: .......... done | | `-- Installing libXext-1.3.3_1,1... | | `-- Installing xextproto-7.3.0... | | `-- Extracting xextproto-7.3.0: .......... done | | `-- Extracting libXext-1.3.3_1,1: .......... done | | `-- Installing libXrender-0.9.10... | | `-- Installing renderproto-0.11.1... | | `-- Extracting renderproto-0.11.1: ....... done | | `-- Extracting libXrender-0.9.10: .......... done | | `-- Installing mesa-libs-18.1.2... | | `-- Installing libXdamage-1.1.4_3... | | | `-- Installing damageproto-1.2.1... | | | `-- Extracting damageproto-1.2.1: ....... done | | | `-- Installing libXfixes-5.0.3... | | | `-- Installing fixesproto-5.0... | | | `-- Extracting fixesproto-5.0: ....... done | | | `-- Extracting libXfixes-5.0.3: .......... done | | `-- Extracting libXdamage-1.1.4_3: ......... done | | `-- Installing libXxf86vm-1.1.4_1... | | | `-- Installing xf86vidmodeproto-2.3.1... | | | `-- Extracting xf86vidmodeproto-2.3.1: ....... done | | `-- Extracting libXxf86vm-1.1.4_1: .......... done | | `-- Installing libdrm-2.4.92,1... | | | `-- Installing libpciaccess-0.13.5... | | | `-- Installing pciids-20180428... | | | `-- Extracting pciids-20180428: ..... done | | | `-- Extracting libpciaccess-0.13.5: ......... done | | `-- Extracting libdrm-2.4.92,1: .......... done | | `-- Installing libelf-0.8.13_3... | | `-- Extracting libelf-0.8.13_3: .......... done | | `-- Installing libxshmfence-1.2_2... | | `-- Extracting libxshmfence-1.2_2: ......... done | | `-- Extracting mesa-libs-18.1.2: .......... done | | `-- Installing pixman-0.34.0... | | `-- Extracting pixman-0.34.0: .......... done | | `-- Installing png-1.6.34... | | `-- Extracting png-1.6.34: .......... done | | `-- Installing xcb-util-renderutil-0.3.9_1... | | `-- Installing xcb-util-0.4.0_2,1... | | `-- Extracting xcb-util-0.4.0_2,1: .......... done | | `-- Extracting xcb-util-renderutil-0.3.9_1: ......... done | `-- Extracting cairo-1.14.8_1,2: .......... done | `-- Installing curl-7.60.0... | | `-- Installing ca_root_nss-3.38... | | `-- Extracting ca_root_nss-3.38: ........ done | | `-- Installing krb5-1.16.1_5... | | `-- Installing pkgconf-1.4.2,1... | | `-- Extracting pkgconf-1.4.2,1: .......... done | | `-- Extracting krb5-1.16.1_5: .......... done | | `-- Installing libnghttp2-1.32.0... | | `-- Extracting libnghttp2-1.32.0: .......... done | `-- Extracting curl-7.60.0: .......... done | `-- Installing gcc6-6.4.0_7... | | `-- Installing binutils-2.30_3,1... | | `-- Extracting binutils-2.30_3,1: .......... done | | `-- Installing gmp-6.1.2... | | `-- Extracting gmp-6.1.2: .......... done | | `-- Installing mpc-1.1.0_1... | | `-- Installing mpfr-4.0.1... | | `-- Extracting mpfr-4.0.1: .......... done | | `-- Extracting mpc-1.1.0_1: ......... done | `-- Extracting gcc6-6.4.0_7: .......... done | `-- Installing ghostscript9-agpl-base-9.23_1... | | `-- Installing cups-2.2.8_1... | | `-- Installing avahi-app-0.6.31_6... | | | `-- Installing dbus-glib-0.108... | | | `-- Installing dbus-1.10.16_1... | | | | `-- Installing libICE-1.0.9_1,1... | | | | `-- Extracting libICE-1.0.9_1,1: .......... done | | | | `-- Installing libSM-1.2.2_3,1... | | | | `-- Extracting libSM-1.2.2_3,1: .......... done ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. | | | `-- Extracting dbus-1.10.16_1: ......... done | | | `-- Extracting dbus-glib-0.108: .......... done | | | `-- Installing gdbm-1.13_1... | | | `-- Extracting gdbm-1.13_1: .......... done | | | `-- Installing gnome_subr-1.0... | | | `-- Extracting gnome_subr-1.0: .... done | | | `-- Installing gobject-introspection-1.50.0_1,1... | | | `-- Extracting gobject-introspection-1.50.0_1,1: .......... done | | | `-- Installing libdaemon-0.14_1... | | | `-- Extracting libdaemon-0.14_1: .......... done ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. | | `-- Extracting avahi-app-0.6.31_6: .......... done | | `-- Installing gnutls-3.5.18... | | | `-- Installing libidn2-2.0.5... | | | `-- Installing libunistring-0.9.10... | | | `-- Extracting libunistring-0.9.10: .......... done | | | `-- Extracting libidn2-2.0.5: .......... done | | | `-- Installing libtasn1-4.13... | | | `-- Extracting libtasn1-4.13: .......... done | | | `-- Installing nettle-3.4... | | | `-- Extracting nettle-3.4: .......... done | | | `-- Installing p11-kit-0.23.12... | | | `-- Extracting p11-kit-0.23.12: .......... done | | | `-- Installing trousers-0.3.14_2... | | | `-- Installing tpm-emulator-0.7.4_2... ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting tpm-emulator-0.7.4_2: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting trousers-0.3.14_2: .......... done | | `-- Extracting gnutls-3.5.18: .......... done | | `-- Installing libpaper-1.1.24.4... | | `-- Extracting libpaper-1.1.24.4: .......... done ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. | | `-- Extracting cups-2.2.8_1: .......... done | | `-- Installing jbig2dec-0.14... | | `-- Extracting jbig2dec-0.14: .......... done | | `-- Installing jpeg-turbo-1.5.3... | | `-- Extracting jpeg-turbo-1.5.3: .......... done | | `-- Installing libidn-1.34... | | `-- Extracting libidn-1.34: .......... done | | `-- Installing libijs-0.35_5... | | `-- Extracting libijs-0.35_5: .......... done | | `-- Installing openjpeg-2.3.0... | | `-- Installing lcms2-2.9... | | | `-- Installing tiff-4.0.9_1... | | | `-- Installing jbigkit-2.1_1... | | | `-- Extracting jbigkit-2.1_1: .......... done | | | `-- Extracting tiff-4.0.9_1: .......... done | | `-- Extracting lcms2-2.9: .......... done | | `-- Extracting openjpeg-2.3.0: .......... done | | `-- Installing poppler-data-0.4.9... | | `-- Extracting poppler-data-0.4.9: .......... done | `-- Extracting ghostscript9-agpl-base-9.23_1: .......... done | `-- Installing gmake-4.2.1_2... | `-- Extracting gmake-4.2.1_2: .......... done | `-- Installing icu-62.1_1,1... | `-- Extracting icu-62.1_1,1: .......... done | `-- Installing libXScrnSaver-1.2.2_3... | | `-- Installing scrnsaverproto-1.2.2... | | `-- Extracting scrnsaverproto-1.2.2: ...... done | `-- Extracting libXScrnSaver-1.2.2_3: .......... done | `-- Installing libXmu-1.1.2_3,1... | | `-- Installing libXt-1.1.5,1... | | `-- Extracting libXt-1.1.5,1: .......... done | `-- Extracting libXmu-1.1.2_3,1: .......... done | `-- Installing pango-1.42.0... | | `-- Installing encodings-1.0.4_4,1... | | `-- Installing font-util-1.3.1... | | `-- Extracting font-util-1.3.1: .......... done | | `-- Extracting encodings-1.0.4_4,1: .......... done | | `-- Installing fribidi-0.19.7... | | `-- Extracting fribidi-0.19.7: .......... done | | `-- Installing harfbuzz-1.8.2... | | `-- Installing graphite2-1.3.11... | | `-- Extracting graphite2-1.3.11: .......... done | | `-- Extracting harfbuzz-1.8.2: .......... done | | `-- Installing libXft-2.3.2_1... | | `-- Extracting libXft-2.3.2_1: .......... done | | `-- Installing xorg-fonts-truetype-7.7_1... | | `-- Installing dejavu-2.37... | | | `-- Installing mkfontdir-1.0.7... | | | `-- Installing mkfontscale-1.1.3... | | | | `-- Installing libfontenc-1.1.3_1... | | | | `-- Extracting libfontenc-1.1.3_1: ......... done | | | `-- Extracting mkfontscale-1.1.3: ..... done | | | `-- Extracting mkfontdir-1.0.7: ..... done | | `-- Extracting dejavu-2.37: .......... done | | `-- Installing font-bh-ttf-1.0.3_3... | | `-- Extracting font-bh-ttf-1.0.3_3: .......... done | | `-- Installing font-misc-ethiopic-1.0.3_3... | | `-- Extracting font-misc-ethiopic-1.0.3_3: ... done | | `-- Installing font-misc-meltho-1.0.3_3... | | `-- Extracting font-misc-meltho-1.0.3_3: .......... done | `-- Extracting pango-1.42.0: .......... done | `-- Installing tcl86-8.6.8... | `-- Extracting tcl86-8.6.8: .......... done | `-- Installing tk86-8.6.8_2... | `-- Extracting tk86-8.6.8_2: .......... done `-- Extracting R-3.5.0_1: .......... done Extracting R-cran-DBI-1.0.0: .......... done Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from perl5-5.26.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from ca_root_nss-3.38: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from gcc6-6.4.0_7: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc6 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from libijs-0.35_5: ===> NOTICE: The libijs port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from ghostscript9-agpl-base-9.23_1: This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> R-cran-RSQLite-1.0.0_2 depends on package: R-cran-DBI>=0.2.5 - found ===> Returning to build of R-cran-RSQLite-1.0.0_2 ===> R-cran-RSQLite-1.0.0_2 depends on file: /usr/local/bin/R - found ===> R-cran-RSQLite-1.0.0_2 depends on executable: gfortran6 - found ===> R-cran-RSQLite-1.0.0_2 depends on executable: gcc6 - found ===> R-cran-RSQLite-1.0.0_2 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for R-cran-RSQLite-1.0.0_2 -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> R-cran-RSQLite-1.0.0_2 depends on package: R-cran-DBI>=0.2.5 - found ===> R-cran-RSQLite-1.0.0_2 depends on file: /usr/local/bin/R - found ===> R-cran-RSQLite-1.0.0_2 depends on executable: gfortran6 - found ===> R-cran-RSQLite-1.0.0_2 depends on executable: gcc6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for R-cran-RSQLite-1.0.0_2 ===> Generating temporary packing list * installing *source* package 'RSQLite' ... ** package 'RSQLite' successfully unpacked and MD5 sums checked checking for gcc... gcc6 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc6 accepts -g... yes checking for gcc6 option to accept ISO C89... none needed checking how to run the C preprocessor... cpp6 checking for gcc... (cached) gcc6 checking whether we are using the GNU C compiler... (cached) yes checking whether gcc6 accepts -g... (cached) yes checking for gcc6 option to accept ISO C89... (cached) none needed checking for library containing fdatasync... no configure: creating ./config.status config.status: creating src/Makevars ** libs gmake[1]: Entering directory '/construction/databases/R-cran-RSQLite/RSQLite/src' gcc6 -I"/usr/local/lib/R/include" -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000 -DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c connection.c -o connection.o gcc6 -I"/usr/local/lib/R/include" -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000 -DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c driver.c -o driver.o gcc6 -I"/usr/local/lib/R/include" -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000 -DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c exceptions.c -o exceptions.o gcc6 -I"/usr/local/lib/R/include" -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000 -DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c extension-functions.c -o extension-functions.o gcc6 -I"/usr/local/lib/R/include" -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000 -DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c fetch.c -o fetch.o gcc6 -I"/usr/local/lib/R/include" -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000 -DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c fields.c -o fields.o gcc6 -I"/usr/local/lib/R/include" -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000 -DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c importFile.c -o importFile.o gcc6 -I"/usr/local/lib/R/include" -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000 -DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c param_binding.c -o param_binding.o gcc6 -I"/usr/local/lib/R/include" -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000 -DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c quick_column.c -o quick_column.o gcc6 -I"/usr/local/lib/R/include" -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000 -DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c result.c -o result.o gcc6 -I"/usr/local/lib/R/include" -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000 -DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c sqlite-all.c -o sqlite-all.o gcc6 -I"/usr/local/lib/R/include" -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000 -DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c utils.c -o utils.o mkdir -p ../inst/include cp sqlite/sqlite3.h ../inst/include cp sqlite/sqlite3ext.h ../inst/include gcc6 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -o RSQLite.so connection.o driver.o exceptions.o extension-functions.o fetch.o fields.o importFile.o param_binding.o quick_column.o result.o sqlite-all.o utils.o -L/usr/local/lib/R/lib -lR gmake[1]: Leaving directory '/construction/databases/R-cran-RSQLite/RSQLite/src' installing to /construction/databases/R-cran-RSQLite/stage/usr/local/lib/R/library/RSQLite/libs ** R ** inst ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (RSQLite) /usr/bin/find /construction/databases/R-cran-RSQLite/stage/usr/local/lib/R/library/RSQLite -name '*.so' -exec /usr/bin/strip {} + ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for R-cran-RSQLite-1.0.0_2 file sizes/checksums [37]: . done packing files [37]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Thursday, 30 AUG 2018 at 09:37:49 UTC Duration: 00:02:09