=> Building biology/slclust Started : Thursday, 30 AUG 2018 at 13:01:06 UTC Platform: 5.3-DEVELOPMENT DragonFly 5.3-DEVELOPMENT #140: Wed Aug 29 22:06:30 PDT 2018 root@test.backplane.com:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.3-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.3-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/biology/slclust XDG_CONFIG_HOME=/construction/biology/slclust HOME=/construction/biology/slclust TMPDIR="/tmp" PATH=/construction/biology/slclust/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/biology/slclust XDG_CONFIG_HOME=/construction/biology/slclust HOME=/construction/biology/slclust TMPDIR="/tmp" PATH=/construction/biology/slclust/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/slclust/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" OSREL=5.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/slclust" EXAMPLESDIR="share/examples/slclust" DATADIR="share/slclust" WWWDIR="www/slclust" ETCDIR="etc/slclust" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/slclust DOCSDIR=/usr/local/share/doc/slclust EXAMPLESDIR=/usr/local/share/examples/slclust WWWDIR=/usr/local/www/slclust ETCDIR=/usr/local/etc/slclust -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=12 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500316 OSVERSION=9999999 OSREL=5.3 _OSRELEASE=5.3-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License ART10 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> slclust-2010.02.02 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> slclust-2010.02.02 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of slclust-2010.02.02 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License ART10 accepted by the user ===> Fetching all distfiles required by slclust-2010.02.02 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License ART10 accepted by the user ===> Fetching all distfiles required by slclust-2010.02.02 for building => SHA256 Checksum OK for slclust_02022010.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License ART10 accepted by the user ===> Fetching all distfiles required by slclust-2010.02.02 for building ===> Extracting for slclust-2010.02.02 => SHA256 Checksum OK for slclust_02022010.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for slclust-2010.02.02 ===> Applying ports patches for slclust-2010.02.02 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for slclust-2010.02.02 -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for slclust-2010.02.02 --- all --- X=`pwd`; for i in src; do echo '<<<' $i '>>>'; cd $X/$i; make all; done <<< src >>> --- slcluster.o --- --- graph.o --- --- graphnode.o --- --- cmd_line_opts.o --- --- graph.o --- c++ -c -pipe -O2 -fno-strict-aliasing -I../include graph.cpp --- graphnode.o --- c++ -c -pipe -O2 -fno-strict-aliasing -I../include graphnode.cpp --- slcluster.o --- c++ -c -pipe -O2 -fno-strict-aliasing -I../include slcluster.cpp --- cmd_line_opts.o --- c++ -c -pipe -O2 -fno-strict-aliasing -I../include cmd_line_opts.cpp --- slclust --- c++ slcluster.o graph.o graphnode.o cmd_line_opts.o -o slclust chmod 755 slclust -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for slclust-2010.02.02 ===> Generating temporary packing list install -s -m 555 /construction/biology/slclust/slclust/src/slclust /construction/biology/slclust/stage/usr/local/bin ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for slclust-2010.02.02 file sizes/checksums [4]: . done packing files [4]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Thursday, 30 AUG 2018 at 13:01:15 UTC Duration: 00:00:09