=> Building math/sdpara build started at Wed Oct 5 07:04:36 PDT 2016 port directory: /usr/ports/math/sdpara building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: ports@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../03//usr/ports/math/sdpara/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=sdpara-7.3.1 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for sdpara-7.3.1: EXAMPLES=on: Build and/or install examples ====> Options available for the single BLAS: you have to select exactly one of them ATLAS=off: ATLAS blas implementation GOTOBLAS=off: GotoBLAS blas implementation REFERENCE=on: Reference blas implementation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" MAKE=gmake XDG_DATA_HOME=/wrkdirs/math/sdpara XDG_CONFIG_HOME=/wrkdirs/math/sdpara HOME=/wrkdirs/math/sdpara TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/math/sdpara XDG_CONFIG_HOME=/wrkdirs/math/sdpara HOME=/wrkdirs/math/sdpara TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -L/usr/local/lib" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/sdpara" EXAMPLESDIR="share/examples/sdpara" DATADIR="share/sdpara" WWWDIR="www/sdpara" ETCDIR="etc/sdpara" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/sdpara DOCSDIR=/usr/local/share/doc/sdpara EXAMPLESDIR=/usr/local/share/examples/sdpara WWWDIR=/usr/local/www/sdpara ETCDIR=/usr/local/etc/sdpara --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> NOTICE: The sdpara port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> sdpara-7.3.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> sdpara-7.3.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of sdpara-7.3.1 =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The sdpara port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by sdpara-7.3.1 for building =========================================================================== =================================================== ===> NOTICE: The sdpara port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by sdpara-7.3.1 for building => SHA256 Checksum OK for sdpa/sdpara.7.3.1.src.20100914.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The sdpara port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by sdpara-7.3.1 for building ===> Extracting for sdpara-7.3.1 => SHA256 Checksum OK for sdpa/sdpara.7.3.1.src.20100914.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for sdpara-7.3.1 =========================================================================== =================================================== ===> sdpara-7.3.1 depends on executable: gfortran5 - not found ===> Installing existing package /packages/All/gcc5-5.4.0.txz Installing gcc5-5.4.0... `-- Installing indexinfo-0.2.5... `-- Extracting indexinfo-0.2.5: .... done `-- Installing mpc-1.0.3... | `-- Installing gmp-5.1.3_3... | `-- Extracting gmp-5.1.3_3: .......... done | `-- Installing mpfr-3.1.5... | `-- Extracting mpfr-3.1.5: .......... done `-- Extracting mpc-1.0.3: ...... done `-- Installing binutils-2.27_4,1... | `-- Installing gettext-runtime-0.19.8.1... | `-- Extracting gettext-runtime-0.19.8.1: .......... done `-- Extracting binutils-2.27_4,1: .......... done Extracting gcc5-5.4.0: .......... done Message from gcc5-5.4.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> sdpara-7.3.1 depends on executable: gfortran5 - found ===> Returning to build of sdpara-7.3.1 ===> sdpara-7.3.1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz Installing gmake-4.2.1_1... Extracting gmake-4.2.1_1: .......... done ===> sdpara-7.3.1 depends on executable: gmake - found ===> Returning to build of sdpara-7.3.1 ===> sdpara-7.3.1 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== ===> sdpara-7.3.1 depends on shared library: libblacs.so - not found ===> Installing existing package /packages/All/blacs-1.7_27.txz Installing blacs-1.7_27... `-- Installing mpich2-1.5_3,5... | `-- Installing libXt-1.1.5,1... | | `-- Installing xproto-7.0.28... | | `-- Extracting xproto-7.0.28: .......... done | | `-- Installing libSM-1.2.2_3,1... | | `-- Installing libICE-1.0.9_1,1... | | `-- Extracting libICE-1.0.9_1,1: .......... done | | `-- Extracting libSM-1.2.2_3,1: .......... done | | `-- Installing libX11-1.6.3,1... | | `-- Installing kbproto-1.0.7... | | `-- Extracting kbproto-1.0.7: .......... done | | `-- Installing libXdmcp-1.1.2... | | `-- Extracting libXdmcp-1.1.2: ......... done | | `-- Installing libxcb-1.11.1... | | | `-- Installing libxml2-2.9.4... | | | `-- Extracting libxml2-2.9.4: .......... done | | | `-- Installing libpthread-stubs-0.3_6... | | | `-- Extracting libpthread-stubs-0.3_6: ..... done | | | `-- Installing libXau-1.0.8_3... | | | `-- Extracting libXau-1.0.8_3: .......... done | | `-- Extracting libxcb-1.11.1: .......... done | | `-- Extracting libX11-1.6.3,1: .......... done | `-- Extracting libXt-1.1.5,1: .......... done | `-- Installing openjdk8-8.102.14_1... | | `-- Installing giflib-5.1.3... | | `-- Extracting giflib-5.1.3: .......... done | | `-- Installing libXtst-1.2.2_3... | | `-- Installing libXext-1.3.3_1,1... | | | `-- Installing xextproto-7.3.0... | | | `-- Extracting xextproto-7.3.0: .......... done | | `-- Extracting libXext-1.3.3_1,1: .......... done | | `-- Installing inputproto-2.3.1... | | `-- Extracting inputproto-2.3.1: ..... done | | `-- Installing libXi-1.7.6,1... | | | `-- Installing libXfixes-5.0.1_3... | | | `-- Installing fixesproto-5.0... | | | `-- Extracting fixesproto-5.0: .... done | | | `-- Extracting libXfixes-5.0.1_3: .......... done | | `-- Extracting libXi-1.7.6,1: .......... done | | `-- Installing recordproto-1.14.2... | | `-- Extracting recordproto-1.14.2: .... done | | `-- Extracting libXtst-1.2.2_3: .......... done | | `-- Installing java-zoneinfo-2016.f... | | `-- Extracting java-zoneinfo-2016.f: .......... done | | `-- Installing gcc-4.8.5_2... | | `-- Extracting gcc-4.8.5_2: .......... done | | `-- Installing libXrender-0.9.9... | | `-- Installing renderproto-0.11.1... | | `-- Extracting renderproto-0.11.1: .... done | | `-- Extracting libXrender-0.9.9: .......... done | | `-- Installing freetype2-2.6.3... | | `-- Extracting freetype2-2.6.3: .......... done | | `-- Installing alsa-lib-1.1.2... | | `-- Extracting alsa-lib-1.1.2: .......... done | | `-- Installing fontconfig-2.12.1,1... | | `-- Installing expat-2.2.0... | | `-- Extracting expat-2.2.0: .......... done | | `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | | `-- Installing dejavu-2.35... | | `-- Installing mkfontdir-1.0.7... | | | `-- Installing mkfontscale-1.1.2... | | | `-- Installing libfontenc-1.1.3... | | | `-- Extracting libfontenc-1.1.3: ...... done | | | `-- Extracting mkfontscale-1.1.2: .. done | | `-- Extracting mkfontdir-1.0.7: .. done | | `-- Extracting dejavu-2.35: .......... done | | `-- Installing javavmwrapper-2.5_2... | | `-- Extracting javavmwrapper-2.5_2: .......... done | `-- Extracting openjdk8-8.102.14_1: .......... done | `-- Installing bash-4.3.46_1... | `-- Extracting bash-4.3.46_1: .......... done | `-- Installing python27-2.7.12... | | `-- Installing readline-6.3.8... | | `-- Installing ncurses-6.0_5... | | `-- Extracting ncurses-6.0_5: .......... done | | `-- Extracting readline-6.3.8: .......... done | | `-- Installing libffi-3.2.1... | | `-- Extracting libffi-3.2.1: .......... done | | `-- Installing libressl-2.4.3... | | `-- Extracting libressl-2.4.3: .......... done | `-- Extracting python27-2.7.12: .......... done `-- Extracting mpich2-1.5_3,5: .......... done Extracting blacs-1.7_27: .......... done Message from gcc-4.8.5_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc48 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from dejavu-2.35: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from openjdk8-8.102.14_1: ====================================================================== This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ====================================================================== Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from mpich2-1.5_3,5: ======================================================================= MPICH-2 has been installed under /usr/local. /!\ IMPORTANT /!\ Please change the password in /usr/local/etc/mpd.conf ======================================================================= Message from blacs-1.7_27: ********************************************************************* Please test your blacs installation Test programs are located at /usr/local/share/BLACS/TESTING Example: % cd /usr/local/share/BLACS/TESTING % /usr/local/bin/mpd & % /usr/local/bin/mpirun -np 4 ./xCbtest_MPI-FreeBSD % /usr/local/bin/mpirun -np 4 ./xFbtest_MPI-FreeBSD % /usr/local/bin/mpdallexit Or, if you're using OpenMPI: % cd /usr/local/share/BLACS/TESTING % LD_LIBRARY_PATH=/usr/local/mpi/openmpi/lib/ export LD_LIBRARY_PATH % PATH=$PATH:/usr/local/mpi/openmpi/bin/ export PATH % mpirun -np 4 ./xCbtest_MPI-FreeBSD % mpirun -np 4 ./xFbtest_MPI-FreeBSD You can change -np 4 to any number to meet your local environment. See files at /usr/local/share/doc/blacs for detail. ********************************************************************* ===> NOTICE: The blacs port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> sdpara-7.3.1 depends on shared library: libblacs.so - found (/usr/local/lib/libblacs.so) ===> Returning to build of sdpara-7.3.1 ===> sdpara-7.3.1 depends on shared library: libscalapack.so - not found ===> Installing existing package /packages/All/scalapack-2.0.2_8.txz Installing scalapack-2.0.2_8... `-- Installing lapack-3.5.0... | `-- Installing blas-3.5.0_3... | `-- Extracting blas-3.5.0_3: ....... done `-- Extracting lapack-3.5.0: .......... done Extracting scalapack-2.0.2_8: .......... done Message from scalapack-2.0.2_8: *********************************************************************** Please test your scalapack installation Example programs are located at /usr/local/share/examples/SCALAPACK Test programs are located at /usr/local/share/SCALAPACK/TESTING Example: % cd /usr/local/share/SCALAPACK/TESTING % /usr/local/bin/mpd & % /usr/local/bin/mpirun -np 4 ./xcbrd % /usr/local/bin/mpirun -np 4 ./xcdblu etc., etc. ... to perform all the tests, % cd /usr/local/share/SCALAPACK/TESTING % /usr/local/bin/mpd & % csh % foreach i (x*) ? /usr/local/bin/mpirun -np 4 ./$i >& ~/$i.log ? end % /usr/local/bin/mpdallexit If you're using OpenMPI, use this instead: % cd /usr/local/share/SCALAPACK/TESTING % LD_LIBRARY_PATH=/usr/local/mpi/openmpi/lib/ export LD_LIBRARY_PATH % PATH=$PATH:/usr/local/mpi/openmpi/bin/ export PATH % mpirun -np 4 ./xcbrd % mpirun -np 4 ./xcdblu etc., etc. ... You can change -np 4 to any number to meet your environment. See files at /usr/local/share/doc/scalapack for detail. ********************************************************************** ===> NOTICE: The scalapack port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> sdpara-7.3.1 depends on shared library: libscalapack.so - found (/usr/local/lib/libscalapack.so) ===> Returning to build of sdpara-7.3.1 ===> sdpara-7.3.1 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> sdpara-7.3.1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> sdpara-7.3.1 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) =========================================================================== =================================================== ===> Configuring for sdpara-7.3.1 =========================================================================== =================================================== ===> Building for sdpara-7.3.1 gmake[1]: Entering directory '/wrkdirs/math/sdpara/sdpara.7.3.1/mumps' rm -rf build; tar xzf archive/MUMPS_4.8.3.tar.gz mv MUMPS_4.8.3 build; cd build; cp Make.inc/Makefile.inc.generic Makefile.inc; cd build; echo "CC = " /usr/local/bin/mpicc >> Makefile.inc; cd build; echo "FC = " /usr/local/bin/mpif77 >> Makefile.inc; cd build; echo "FL = " /usr/local/bin/mpif77 >> Makefile.inc; cd build; echo "OPTC = " -pipe -O2 -fno-strict-aliasing >> Makefile.inc; cd build; echo "OPTF = " -O -Wl,-rpath=/usr/local/lib/gcc5 >> Makefile.inc; cd build; echo "OPTL = " -O -Wl,-rpath=/usr/local/lib/gcc5 >> Makefile.inc; cd build; echo "LPORDDIR = "`pwd`"/PORD/lib/" >> Makefile.inc; cd build; echo "IPORDDIR = "`pwd`"/PORD/include/" >> Makefile.inc; cd build ; gmake d gmake[2]: Entering directory '/wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build' gmake ARITH=d mumps_lib gmake[3]: Entering directory '/wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build' if [ "/wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build/PORD/lib/" != "" ] ; then \ cd /wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build/PORD/lib/; \ gmake CC="/usr/local/bin/mpicc" CFLAGS="-pipe -O2 -fno-strict-aliasing" AR="ar vr" ARFUNCT= RANLIB="ranlib"; \ fi; gmake[4]: Entering directory '/wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build/PORD/lib' /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c graph.c /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c gbipart.c /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c gbisect.c /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c ddcreate.c /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c ddbisect.c /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c nestdiss.c /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c multisector.c /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c gelim.c /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c bucket.c /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c tree.c /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c symbfac.c /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c interface.c /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c sort.c /usr/local/bin/mpicc -I../include -pipe -O2 -fno-strict-aliasing -c minpriority.c ar vr libpord.a graph.o gbipart.o gbisect.o ddcreate.o ddbisect.o nestdiss.o multisector.o gelim.o bucket.o tree.o symbfac.o interface.o sort.o minpriority.o /usr/libexec/binutils225/elf/ar: creating libpord.a a - graph.o a - gbipart.o a - gbisect.o a - ddcreate.o a - ddbisect.o a - nestdiss.o a - multisector.o a - gelim.o a - bucket.o a - tree.o a - symbfac.o a - interface.o a - sort.o a - minpriority.o ranlib libpord.a gmake[4]: Leaving directory '/wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build/PORD/lib' if [ "/wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build/PORD/lib/" != "" ] ; then \ cp /wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build/PORD/lib//libpord.a lib/libpord.a; \ fi; (cd src ; gmake d) gmake[4]: Entering directory '/wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build/src' gmake ARITH=d mumps_lib gmake[5]: Entering directory '/wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build/src' /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c mumps_part9.F /usr/local/bin/mpicc -pipe -O2 -fno-strict-aliasing -I/usr/include -I../include -DAdd_ -I../PORD/include/ -Dpord -c mumps_common.c /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c mumps_ooc_common.F /usr/local/bin/mpicc -pipe -O2 -fno-strict-aliasing -I/usr/include -I../include -DAdd_ -I../PORD/include/ -Dpord -c mumps_orderings.c /usr/local/bin/mpicc -pipe -O2 -fno-strict-aliasing -I/usr/include -I../include -DAdd_ -I../PORD/include/ -Dpord -c mumps_io.c /usr/local/bin/mpicc -pipe -O2 -fno-strict-aliasing -I/usr/include -I../include -DAdd_ -I../PORD/include/ -Dpord -c mumps_io_basic.c /usr/local/bin/mpicc -pipe -O2 -fno-strict-aliasing -I/usr/include -I../include -DAdd_ -I../PORD/include/ -Dpord -c mumps_io_thread.c In file included from mumps_io.c:47:0: mumps_io_basic.h:173:18: warning: inline function 'mumps_gen_file_info' declared but never defined MUMPS_INLINE int mumps_gen_file_info(long long vaddr, int * pos, int * file); ^ In file included from mumps_io_thread.c:46:0: mumps_io_basic.h:173:18: warning: inline function 'mumps_gen_file_info' declared but never defined MUMPS_INLINE int mumps_gen_file_info(long long vaddr, int * pos, int * file); ^ /usr/local/bin/mpicc -pipe -O2 -fno-strict-aliasing -I/usr/include -I../include -DAdd_ -I../PORD/include/ -Dpord -c mumps_io_err.c /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c mumps_static_mapping.F In file included from mumps_io_err.c:47:0: mumps_io_basic.h:173:18: warning: inline function 'mumps_gen_file_info' declared but never defined MUMPS_INLINE int mumps_gen_file_info(long long vaddr, int * pos, int * file); ^ /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c dmumps_comm_buffer.F /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c dmumps_struc_def.F /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c dmumps_ooc_buffer.F /usr/local/bin/mpicc -pipe -O2 -fno-strict-aliasing -I/usr/include -DAdd_ -DMUMPS_ARITH=MUMPS_ARITH_d \ -I../PORD/include/ -Dpord -I../include -c mumps_c.c -o dmumps_c.o /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c dmumps_ooc.F /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c dmumps_load.F ar vr ../lib/libmumps_common.a mumps_part9.o mumps_common.o mumps_ooc_common.o mumps_orderings.o mumps_io.o mumps_io_basic.o mumps_io_thread.o mumps_io_err.o mumps_static_mapping.o /usr/libexec/binutils225/elf/ar: creating ../lib/libmumps_common.a a - mumps_part9.o a - mumps_common.o a - mumps_ooc_common.o a - mumps_orderings.o a - mumps_io.o a - mumps_io_basic.o a - mumps_io_thread.o a - mumps_io_err.o a - mumps_static_mapping.o ranlib ../lib/libmumps_common.a /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c dmumps_part1.F /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c dmumps_part2.F /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c dmumps_part3.F /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c dmumps_part4.F /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c dmumps_part5.F dmumps_part3.F:5696:21: * id%ELTVAR( IELTPTR ), id%A_ELT( RELTPTR ), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'eltvar' at (1) dmumps_part3.F:5714:17: * id%ELTVAR(IELTPTR), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'elnodes' at (1) dmumps_part3.F:5722:17: * id%ELTVAR(IELTPTR), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'elnodes' at (1) dmumps_part3.F:5754:17: * id%ELTVAR(IELTPTR), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'elnodes' at (1) dmumps_part5.F:373:47: CALL DMUMPS_564(id%KEEP(38), id%PROCNODE(1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'procnode' at (1) dmumps_part5.F:401:20: * id%IS1(NE), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'ne' at (1) dmumps_part5.F:1302:17: * id%CANDIDATES(1,1), id%I_AM_CAND(1) ) 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'candidates' at (1) dmumps_part5.F:1675:23: * id%N, id%MAPPING(1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'mapping' at (1) dmumps_part5.F:5632:51: * BUFRECI, BUFRECR, NBRECORDS, N, IW4(1,1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'iw4' at (1) dmumps_part5.F:5708:60: * PROCNODE_STEPS, A, LA, PTR_ROOT, LOCAL_M, LOCAL_N, IW4(1,1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'iw4' at (1) dmumps_part5.F:5717:60: * PROCNODE_STEPS, A, LA, PTR_ROOT, LOCAL_M, LOCAL_N, IW4(1,1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'iw4' at (1) dmumps_part5.F:5725:60: * PROCNODE_STEPS, A, LA, PTR_ROOT, LOCAL_M, LOCAL_N, IW4(1,1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'iw4' at (1) dmumps_part5.F:5736:8: * IW4(1,1), root, KEEP,KEEP8 ) 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'iw4' at (1) dmumps_part5.F:5744:49: * BUFRECI, BUFRECR, NBRECORDS, N, IW4(1,1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'iw4' at (1) dmumps_part5.F:4695:8: & id%DBLARR(1), KEEP(13), id%INTARR(1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'dblarr' at (1) /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c dmumps_part6.F /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c dmumps_part7.F dmumps_part6.F:3263:14: * root%SCHUR_POINTER(1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'val_root' at (1) dmumps_part6.F:3279:14: * root%SCHUR_POINTER(1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'val_root' at (1) /usr/local/bin/mpif77 -O -Wl,-rpath=/usr/local/lib/gcc5 -I/usr/include -Dpord -I. -I../include -c dmumps_part8.F dmumps_part8.F:648:36: CALL DMUMPS_535( MTYPE, id%ISOL_LOC(1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'isol_loc' at (1) dmumps_part8.F:896:32: * id%MYID_NODES, id%PTLUST_S(1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'ptrist' at (1) dmumps_part8.F:914:23: * MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF, 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1) dmumps_part8.F:923:23: * MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF, 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1) dmumps_part8.F:1080:36: CALL DMUMPS_245(id%root, N, id%S(1), LA_PASSED, 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'a' at (1) dmumps_part8.F:1172:23: * MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF, 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1) dmumps_part8.F:1178:23: * MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF, 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1) dmumps_part8.F:1207:23: * MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF, 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1) dmumps_part8.F:1541:10: * id%S(1), LA_PASSED, id%IS( 1 ), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'a' at (1) dmumps_part8.F:1572:48: * JDUMMY, id%KEEP(1),id%KEEP8(1), id%PROCNODE_STEPS(1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'procnode_steps' at (1) dmumps_part8.F:1578:16: * id%PTLUST_S(1), id%KEEP(1),id%KEEP8(1), 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'ptrist' at (1) ar vr ../lib/libdmumps.a dmumps_part1.o dmumps_part2.o dmumps_part3.o dmumps_part4.o dmumps_part5.o dmumps_part6.o dmumps_part7.o dmumps_part8.o dmumps_comm_buffer.o dmumps_load.o dmumps_c.o dmumps_ooc_buffer.o dmumps_ooc.o dmumps_struc_def.o /usr/libexec/binutils225/elf/ar: creating ../lib/libdmumps.a a - dmumps_part1.o a - dmumps_part2.o a - dmumps_part3.o a - dmumps_part4.o a - dmumps_part5.o a - dmumps_part6.o a - dmumps_part7.o a - dmumps_part8.o a - dmumps_comm_buffer.o a - dmumps_load.o a - dmumps_c.o a - dmumps_ooc_buffer.o a - dmumps_ooc.o a - dmumps_struc_def.o ranlib ../lib/libdmumps.a gmake[5]: Leaving directory '/wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build/src' gmake[4]: Leaving directory '/wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build/src' gmake[3]: Leaving directory '/wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build' gmake[2]: Leaving directory '/wrkdirs/math/sdpara/sdpara.7.3.1/mumps/build' gmake[1]: Leaving directory '/wrkdirs/math/sdpara/sdpara.7.3.1/mumps' gmake[1]: Entering directory '/wrkdirs/math/sdpara/sdpara.7.3.1' /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I. -I./mumps/build/include -o sdpa_exe.o sdpa_exe.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I. -I./mumps/build/include -o sdpa_solve.o sdpa_solve.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I. -I./mumps/build/include -o sdpa_call.o sdpa_call.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_mpist.o sdpa_mpist.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_mpicopy.o sdpa_mpicopy.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_block.o sdpa_block.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_chordal.o sdpa_chordal.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_dataset.o sdpa_dataset.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_dpotrf.o sdpa_dpotrf.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_io.o sdpa_io.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_jordan.o sdpa_jordan.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_linear.o sdpa_linear.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_newton.o sdpa_newton.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_parts.o sdpa_parts.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_struct.o sdpa_struct.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_tool.o sdpa_tool.cpp /usr/local/bin/mpicxx -c -pipe -O2 -fno-strict-aliasing -DF77_FUNC\(name,NAME\)=name\ ##\ _ \ -I./mumps/build/include -o sdpa_rpdpotrf.o sdpa_rpdpotrf.cpp ar r libsdpara.a sdpa_solve.o sdpa_call.o sdpa_mpist.o sdpa_mpicopy.o sdpa_block.o sdpa_chordal.o sdpa_dataset.o sdpa_dpotrf.o sdpa_io.o sdpa_jordan.o sdpa_linear.o sdpa_newton.o sdpa_parts.o sdpa_struct.o sdpa_tool.o sdpa_rpdpotrf.o /usr/libexec/binutils225/elf/ar: creating libsdpara.a /usr/local/bin/mpicxx -pipe -O2 -fno-strict-aliasing -o sdpara sdpa_exe.o libsdpara.a \ -L./mumps/build/lib -ldmumps -lmumps_common -lpord \ -L/usr/local/lib -lscalapack -lblacs -lblacsc \ -L/usr/local/lib -llapack -L/usr/local/lib -lblas \ -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -L/usr/local/lib -lgfortran -lpthread gmake[1]: Leaving directory '/wrkdirs/math/sdpara/sdpara.7.3.1' =========================================================================== =================================================== ===> sdpara-7.3.1 depends on executable: gfortran5 - found =========================================================================== =================================================== ===> Staging for sdpara-7.3.1 ===> Generating temporary packing list install -s -m 555 /wrkdirs/math/sdpara/sdpara.7.3.1/sdpara /wrkdirs/math/sdpara/stage/usr/local/bin install -m 0644 /wrkdirs/math/sdpara/sdpara.7.3.1/param.sdpa /wrkdirs/math/sdpara/stage/usr/local/share/sdpara install -m 0644 /wrkdirs/math/sdpara/sdpara.7.3.1/example* /wrkdirs/math/sdpara/stage/usr/local/share/examples/sdpara ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for sdpara-7.3.1 file sizes/checksums [10]: . done packing files [10]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for sdpara-7.3.1 build of math/sdpara ended at Wed Oct 5 07:06:49 PDT 2016 build time: 00:02:13