=> Building math/rpy2 build started at Wed Oct 5 16:10:10 PDT 2016 port directory: /usr/ports/math/rpy2 building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: ports@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../08//usr/ports/math/rpy2/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=rpy2-2.7.8_1 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/math/rpy2 XDG_CONFIG_HOME=/wrkdirs/math/rpy2 HOME=/wrkdirs/math/rpy2 TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/math/rpy2 XDG_CONFIG_HOME=/wrkdirs/math/rpy2 HOME=/wrkdirs/math/rpy2 TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="gcc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="gcc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin" LIBS="" CXX="g++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly4 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/rpy2" EXAMPLESDIR="share/examples/rpy2" DATADIR="share/rpy2" WWWDIR="www/rpy2" ETCDIR="etc/rpy2" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/rpy2 DOCSDIR=/usr/local/share/doc/rpy2 EXAMPLESDIR=/usr/local/share/examples/rpy2 WWWDIR=/usr/local/www/rpy2 ETCDIR=/usr/local/etc/rpy2 --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> NOTICE: The rpy2 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2+ accepted by the user =========================================================================== =================================================== ===> rpy2-2.7.8_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> rpy2-2.7.8_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of rpy2-2.7.8_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The rpy2 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by rpy2-2.7.8_1 for building =========================================================================== =================================================== ===> NOTICE: The rpy2 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by rpy2-2.7.8_1 for building => SHA256 Checksum OK for rpy2-2.7.8.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The rpy2 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by rpy2-2.7.8_1 for building ===> Extracting for rpy2-2.7.8_1 ===> NOTICE: The rpy2 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by rpy2-2.7.8_1 for building => SHA256 Checksum OK for rpy2-2.7.8.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for rpy2-2.7.8_1 =========================================================================== =================================================== ===> rpy2-2.7.8_1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - not found ===> Installing existing package /packages/All/py27-numpy-1.11.1,1.txz Installing py27-numpy-1.11.1,1... `-- Installing python27-2.7.12... | `-- Installing expat-2.2.0... | `-- Extracting expat-2.2.0: .......... done | `-- Installing readline-6.3.8... | | `-- Installing indexinfo-0.2.5... | | `-- Extracting indexinfo-0.2.5: .... done | | `-- Installing ncurses-6.0_5... | | `-- Extracting ncurses-6.0_5: .......... done | `-- Extracting readline-6.3.8: .......... done | `-- Installing libffi-3.2.1... | `-- Extracting libffi-3.2.1: .......... done | `-- Installing libressl-2.4.3... | `-- Extracting libressl-2.4.3: .......... done | `-- Installing gettext-runtime-0.19.8.1... | `-- Extracting gettext-runtime-0.19.8.1: .......... done `-- Extracting python27-2.7.12: .......... done `-- Installing py27-setuptools27-23.1.0... `-- Extracting py27-setuptools27-23.1.0: .......... done `-- Installing lapack-3.5.0... | `-- Installing blas-3.5.0_3... | | `-- Installing gcc5-5.4.0... | | `-- Installing mpc-1.0.3... | | | `-- Installing gmp-5.1.3_3... | | | `-- Extracting gmp-5.1.3_3: .......... done | | | `-- Installing mpfr-3.1.5... | | | `-- Extracting mpfr-3.1.5: .......... done | | `-- Extracting mpc-1.0.3: ...... done | | `-- Installing binutils-2.27_4,1... | | `-- Extracting binutils-2.27_4,1: .......... done | | `-- Extracting gcc5-5.4.0: .......... done | `-- Extracting blas-3.5.0_3: ....... done `-- Extracting lapack-3.5.0: .......... done `-- Installing openblas-0.2.18_1,1... `-- Extracting openblas-0.2.18_1,1: ......... done `-- Installing suitesparse-4.0.2_4... `-- Extracting suitesparse-4.0.2_4: .......... done `-- Installing cblas-1.0_4... `-- Extracting cblas-1.0_4: ......... done Extracting py27-numpy-1.11.1,1: .......... done Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from gcc5-5.4.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_4: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> rpy2-2.7.8_1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found ===> Returning to build of rpy2-2.7.8_1 ===> rpy2-2.7.8_1 depends on executable: R - not found ===> Installing existing package /packages/All/R-3.3.1_4.txz Installing R-3.3.1_4... `-- Installing libXt-1.1.5,1... | `-- Installing xproto-7.0.28... | `-- Extracting xproto-7.0.28: .......... done | `-- Installing libSM-1.2.2_3,1... | | `-- Installing libICE-1.0.9_1,1... | | `-- Extracting libICE-1.0.9_1,1: .......... done | `-- Extracting libSM-1.2.2_3,1: .......... done | `-- Installing libX11-1.6.3,1... | | `-- Installing kbproto-1.0.7... | | `-- Extracting kbproto-1.0.7: .......... done | | `-- Installing libXdmcp-1.1.2... | | `-- Extracting libXdmcp-1.1.2: ......... done | | `-- Installing libxcb-1.11.1... | | `-- Installing libxml2-2.9.4... | | `-- Extracting libxml2-2.9.4: .......... done | | `-- Installing libpthread-stubs-0.3_6... | | `-- Extracting libpthread-stubs-0.3_6: ..... done | | `-- Installing libXau-1.0.8_3... | | `-- Extracting libXau-1.0.8_3: .......... done | | `-- Extracting libxcb-1.11.1: .......... done | `-- Extracting libX11-1.6.3,1: .......... done `-- Extracting libXt-1.1.5,1: .......... done `-- Installing pango-1.38.0_1... | `-- Installing encodings-1.0.4_3,1... | | `-- Installing font-util-1.3.1... | | `-- Extracting font-util-1.3.1: .......... done | `-- Extracting encodings-1.0.4_3,1: .......... done | `-- Installing fontconfig-2.12.1,1... | | `-- Installing freetype2-2.6.3... | | `-- Extracting freetype2-2.6.3: .......... done | `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: caching, new cache contents: 0 fonts, 2 dirs /usr/local/share/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs /usr/local/share/fonts/encodings/large: caching, new cache contents: 0 fonts, 0 dirs /usr/local/share/fonts/util: caching, new cache contents: 0 fonts, 0 dirs /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | `-- Installing libXft-2.3.2_1... | | `-- Installing libXrender-0.9.9... | | `-- Installing renderproto-0.11.1... | | `-- Extracting renderproto-0.11.1: .... done | | `-- Extracting libXrender-0.9.9: .......... done | `-- Extracting libXft-2.3.2_1: ......... done | `-- Installing harfbuzz-1.3.2... | | `-- Installing cairo-1.14.6_1,2... | | `-- Installing glproto-1.4.17... | | `-- Extracting glproto-1.4.17: ...... done | | `-- Installing libEGL-11.2.2... | | | `-- Installing libdevq-0.0.2_1... | | | `-- Extracting libdevq-0.0.2_1: ....... done | | | `-- Installing libXdamage-1.1.4_3... | | | `-- Installing libXfixes-5.0.1_3... | | | | 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`-- Installing pkgconf-1.0.1... | | `-- Extracting pkgconf-1.0.1: .......... done | `-- Extracting krb5-1.14.4: .......... done `-- Extracting curl-7.50.3: .......... done `-- Installing gcc6-6.2.0... `-- Extracting gcc6-6.2.0: .......... done `-- Installing ghostscript9-agpl-base-9.16_5... | `-- Installing cups-2.1.4... | | `-- Installing avahi-app-0.6.31_5... | | `-- Installing gnome_subr-1.0... | | `-- Extracting gnome_subr-1.0: . done | | `-- Installing gobject-introspection-1.46.0... | | | `-- Installing python2-2_3... | | | `-- Extracting python2-2_3: ...... done | | `-- Extracting gobject-introspection-1.46.0: .......... done | | `-- Installing gdbm-1.12... | | `-- Extracting gdbm-1.12: .......... done | | `-- Installing libdaemon-0.14_1... | | `-- Extracting libdaemon-0.14_1: .......... done | | `-- Installing dbus-glib-0.104... | | | `-- Installing dbus-1.8.20... ===> Creating groups. 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Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. | `-- Extracting cups-2.1.4: .......... done | `-- Installing jbig2dec-0.13... | `-- Extracting jbig2dec-0.13: .......... done | `-- Installing gsfonts-8.11_6... | `-- Extracting gsfonts-8.11_6: .......... done | `-- Installing jpeg-turbo-1.4.2... | `-- Extracting jpeg-turbo-1.4.2: .......... done | `-- Installing lcms2-2.7_2... | | `-- Installing tiff-4.0.6_2... | | `-- Installing jbigkit-2.1_1... | | `-- Extracting jbigkit-2.1_1: .......... done | | `-- Extracting tiff-4.0.6_2: .......... done | `-- Extracting lcms2-2.7_2: .......... done `-- Extracting ghostscript9-agpl-base-9.16_5: .......... done `-- Installing libXScrnSaver-1.2.2_3... | `-- Installing scrnsaverproto-1.2.2... | `-- Extracting scrnsaverproto-1.2.2: ... done `-- Extracting libXScrnSaver-1.2.2_3: .......... done `-- Installing tk86-8.6.6... | `-- Installing tcl86-8.6.6... | `-- Extracting tcl86-8.6.6: .......... done `-- Extracting tk86-8.6.6: .......... done `-- Installing libXmu-1.1.2_3,1... `-- Extracting libXmu-1.1.2_3,1: .......... done Extracting R-3.3.1_4: .......... done Message from perl5-5.20.3_15: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from dejavu-2.35: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from ca_root_nss-3.27: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. 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FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init have to be configured if you want to use FAPI feature. ===> rpy2-2.7.8_1 depends on executable: R - found ===> Returning to build of rpy2-2.7.8_1 ===> rpy2-2.7.8_1 depends on package: py27-setuptools27>0 - found ===> rpy2-2.7.8_1 depends on file: /usr/local/bin/python2.7 - found ===> rpy2-2.7.8_1 depends on executable: gfortran5 - found ===> rpy2-2.7.8_1 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== ===> rpy2-2.7.8_1 depends on shared library: libreadline.so.6 - found (/usr/local/lib/libreadline.so.6) =========================================================================== =================================================== ===> Configuring for rpy2-2.7.8_1 R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" /usr/local/lib/R/bin/R CMD config --ldflags /usr/local/lib/R/bin/R CMD config --cppflags Compilation parameters for rpy2's C components: include_dirs = ['/usr/local/lib/R/include'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc5', '/usr/local/lib/R/lib'] libraries = ['R', 'pcre', 'lzma', 'bz2', 'z', 'rt', 'dl', 'm', 'icuuc', 'icui18n'] extra_link_args = ['-Wl,--export-dynamic', '-Wl,-rpath=/usr/local/lib/gcc5', '-B/usr/local/bin'] running config =========================================================================== =================================================== ===> Building for rpy2-2.7.8_1 R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" /usr/local/lib/R/bin/R CMD config --ldflags /usr/local/lib/R/bin/R CMD config --cppflags Compilation parameters for rpy2's C components: include_dirs = ['/usr/local/lib/R/include'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc5', '/usr/local/lib/R/lib'] libraries = ['R', 'pcre', 'lzma', 'bz2', 'z', 'rt', 'dl', 'm', 'icuuc', 'icui18n'] extra_link_args = ['-Wl,--export-dynamic', '-Wl,-rpath=/usr/local/lib/gcc5', '-B/usr/local/bin'] running build running build_py creating build creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2 copying ./rpy/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2 copying ./rpy/tests.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2 copying ./rpy/rpy_classic.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2 copying ./rpy/tests_rpy_classic.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2 creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike copying ./rpy/rlike/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike copying ./rpy/rlike/container.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike copying ./rpy/rlike/functional.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike copying ./rpy/rlike/indexing.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike/tests copying ./rpy/rlike/tests/test_functional.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike/tests copying ./rpy/rlike/tests/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike/tests copying ./rpy/rlike/tests/test_indexing.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike/tests copying ./rpy/rlike/tests/test_container.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike/tests creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface copying ./rpy/rinterface/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpEnvironment.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpClosure.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpExtPtr.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_Sexp.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_EmbeddedR.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpVector.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpSymbol.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_Device.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpVectorNumeric.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/robject.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/functions.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/vectors.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/numpy2ri.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/language.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/packages_utils.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/methods.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/help.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/environments.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/packages.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/conversion.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/pandas2ri.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/constants.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testArray.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testNumpyConversions.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testHelp.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testVector.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testDataFrame.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testPackages.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testPandasConversions.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testMethods.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testFormula.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testRobjects.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testRObject.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testFunction.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testLanguage.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testEnvironment.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/grid.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/ggplot2.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/dplyr.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/test_ggplot2.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/test_dplyr.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib/tests creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/interactive copying ./rpy/interactive/process_revents.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/interactive copying ./rpy/interactive/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/interactive copying ./rpy/interactive/packages.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/interactive creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/interactive/tests copying ./rpy/interactive/tests/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/interactive/tests creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython copying ./rpy/ipython/ggplot.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython copying ./rpy/ipython/html.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython copying ./rpy/ipython/rmagic.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython copying ./rpy/ipython/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython/tests copying ./rpy/ipython/tests/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython/tests copying ./rpy/ipython/tests/test_rmagic.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython/tests running build_clib building 'r_utils' library creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy/rinterface gcc -DNDEBUG -pipe -O2 -fno-strict-aliasing -I/usr/local/include -fPIC -I./rpy/rinterface -I/usr/local/lib/R/include -c ./rpy/rinterface/r_utils.c -o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/./rpy/rinterface/r_utils.o ./rpy/rinterface/r_utils.c: In function 'externallymanaged_vector': ./rpy/rinterface/r_utils.c:236:40: warning: implicit declaration of function 'malloc' [-Wimplicit-function-declaration] ExternallyManagedVector *extvector = malloc(sizeof(ExternallyManagedVector)); ^ ./rpy/rinterface/r_utils.c:236:40: warning: incompatible implicit declaration of built-in function 'malloc' ./rpy/rinterface/r_utils.c:236:40: note: include '' or provide a declaration of 'malloc' /usr/local/bin/ar rc build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/libr_utils.a build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/./rpy/rinterface/r_utils.o running build_ext R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" building 'rpy2.rinterface._rinterface' extension gcc -DNDEBUG -pipe -O2 -fno-strict-aliasing -I/usr/local/include -fPIC -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface -I/usr/local/lib/R/include -I/usr/local/include/python2.7 -c ./rpy/rinterface/_rinterface.c -o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/./rpy/rinterface/_rinterface.o gcc -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing -I/usr/local/include build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/./rpy/rinterface/_rinterface.o -L/usr/local/lib -L/usr/local/lib/gcc5 -L/usr/local/lib/R/lib -L/usr/local/lib -Lbuild/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 -R/usr/local/lib -R/usr/local/lib/gcc5 -R/usr/local/lib/R/lib -lR -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n -lpython2.7 -lr_utils -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/_rinterface.so -Wl,--export-dynamic -Wl,-rpath=/usr/local/lib/gcc5 -B/usr/local/bin building 'rpy2.rinterface._rpy_device' extension gcc -DNDEBUG -pipe -O2 -fno-strict-aliasing -I/usr/local/include -fPIC -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I/usr/local/lib/R/include -Irpy/rinterface -I/usr/local/include/python2.7 -c ./rpy/rinterface/_rpy_device.c -o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/./rpy/rinterface/_rpy_device.o gcc -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing -I/usr/local/include build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/./rpy/rinterface/_rpy_device.o -L/usr/local/lib -L/usr/local/lib/gcc5 -L/usr/local/lib/R/lib -L/usr/local/lib -Lbuild/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 -R/usr/local/lib -R/usr/local/lib/gcc5 -R/usr/local/lib/R/lib -lR -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n -lpython2.7 -lr_utils -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/_rpy_device.so -Wl,--export-dynamic -Wl,-rpath=/usr/local/lib/gcc5 -B/usr/local/bin =========================================================================== =================================================== ===> rpy2-2.7.8_1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found ===> rpy2-2.7.8_1 depends on executable: R - found ===> rpy2-2.7.8_1 depends on package: py27-setuptools27>0 - found ===> rpy2-2.7.8_1 depends on file: /usr/local/bin/python2.7 - found ===> rpy2-2.7.8_1 depends on executable: gfortran5 - found =========================================================================== =================================================== ===> Staging for rpy2-2.7.8_1 ===> Generating temporary packing list R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" /usr/local/lib/R/bin/R CMD config --ldflags /usr/local/lib/R/bin/R CMD config --cppflags Compilation parameters for rpy2's C components: include_dirs = ['/usr/local/lib/R/include'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc5', '/usr/local/lib/R/lib'] libraries = ['R', 'pcre', 'lzma', 'bz2', 'z', 'rt', 'dl', 'm', 'icuuc', 'icui18n'] extra_link_args = ['-Wl,--export-dynamic', '-Wl,-rpath=/usr/local/lib/gcc5', '-B/usr/local/bin'] running install running build running build_py running build_clib building 'r_utils' library gcc -DNDEBUG -pipe -O2 -fno-strict-aliasing -I/usr/local/include -fPIC -I./rpy/rinterface -I/usr/local/lib/R/include -c ./rpy/rinterface/r_utils.c -o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/./rpy/rinterface/r_utils.o ./rpy/rinterface/r_utils.c: In function 'externallymanaged_vector': ./rpy/rinterface/r_utils.c:236:40: warning: implicit declaration of function 'malloc' [-Wimplicit-function-declaration] ExternallyManagedVector *extvector = malloc(sizeof(ExternallyManagedVector)); ^ ./rpy/rinterface/r_utils.c:236:40: warning: incompatible implicit declaration of built-in function 'malloc' ./rpy/rinterface/r_utils.c:236:40: note: include '' or provide a declaration of 'malloc' /usr/local/bin/ar rc build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/libr_utils.a build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/./rpy/rinterface/r_utils.o running build_ext R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" running install_lib creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7 creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2 copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/tests.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2 creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/_rinterface.so -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/_rpy_device.so -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/__init__.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests/test_SexpEnvironment.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests/test_SexpExtPtr.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests/test_Device.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests/test_Sexp.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests/test_SexpClosure.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests/test_SexpVector.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests/test_EmbeddedR.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests/test_SexpSymbol.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests/__init__.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rinterface/tests/test_SexpVectorNumeric.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testLanguage.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testRobjects.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testMethods.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testEnvironment.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testPandasConversions.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testNumpyConversions.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testHelp.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testDataFrame.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testPackages.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testVector.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testFormula.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testRObject.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testArray.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/__init__.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/tests/testFunction.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/vectors.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/lib copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib/grid.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/lib copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib/ggplot2.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/lib creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/lib/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib/tests/test_ggplot2.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/lib/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib/tests/test_dplyr.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/lib/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib/tests/__init__.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/lib/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib/dplyr.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/lib copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/lib/__init__.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/lib copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/robject.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/methods.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/packages_utils.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/language.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/conversion.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/packages.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/numpy2ri.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/environments.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/help.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/functions.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/pandas2ri.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/constants.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/robjects/__init__.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/tests_rpy_classic.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2 copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/__init__.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2 creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/interactive copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/interactive/process_revents.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/interactive creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/interactive/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/interactive/tests/__init__.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/interactive/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/interactive/packages.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/interactive copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/interactive/__init__.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/interactive creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rlike copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike/indexing.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rlike creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rlike/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike/tests/test_functional.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rlike/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike/tests/test_indexing.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rlike/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike/tests/test_container.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rlike/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike/tests/__init__.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rlike/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike/__init__.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rlike copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike/functional.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rlike copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rlike/container.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rlike creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/ipython copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython/__init__.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/ipython copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython/html.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/ipython creating /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/ipython/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython/tests/__init__.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/ipython/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython/tests/test_rmagic.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/ipython/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython/rmagic.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/ipython copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/ipython/ggplot.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/ipython copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/rpy2/rpy_classic.py -> /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2 byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/tests.py to tests.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests/test_SexpEnvironment.py to test_SexpEnvironment.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests/test_SexpExtPtr.py to test_SexpExtPtr.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests/test_Device.py to test_Device.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests/test_Sexp.py to test_Sexp.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests/test_SexpClosure.py to test_SexpClosure.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests/test_SexpVector.py to test_SexpVector.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests/test_EmbeddedR.py to test_EmbeddedR.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests/test_SexpSymbol.py to test_SexpSymbol.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/rinterface/tests/test_SexpVectorNumeric.py to test_SexpVectorNumeric.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests/testLanguage.py to testLanguage.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests/testRobjects.py to testRobjects.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests/testMethods.py to testMethods.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests/testEnvironment.py to testEnvironment.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests/testPandasConversions.py to testPandasConversions.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests/testNumpyConversions.py to testNumpyConversions.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests/testHelp.py to testHelp.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests/testDataFrame.py to testDataFrame.pyc byte-compiling /wrkdirs/math/rpy2/stage/usr/local/lib/python2.7/site-packages/rpy2/robjects/tests/testPackages.py to testPackages.pyc byte-compiling 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