=> Building science/pycdf build started at Wed Oct 5 17:04:20 PDT 2016 port directory: /usr/ports/science/pycdf building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: ports@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../06//usr/ports/science/pycdf/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=pycdf-0.6.3_5 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/science/pycdf XDG_CONFIG_HOME=/wrkdirs/science/pycdf HOME=/wrkdirs/science/pycdf TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/science/pycdf XDG_CONFIG_HOME=/wrkdirs/science/pycdf HOME=/wrkdirs/science/pycdf TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" "-L/usr/local/lib"" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly4 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pycdf" EXAMPLESDIR="share/examples/pycdf" DATADIR="share/pycdf" WWWDIR="www/pycdf" ETCDIR="etc/pycdf" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pycdf DOCSDIR=/usr/local/share/doc/pycdf EXAMPLESDIR=/usr/local/share/examples/pycdf WWWDIR=/usr/local/www/pycdf ETCDIR=/usr/local/etc/pycdf --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> NOTICE: The pycdf port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port =========================================================================== =================================================== ===> pycdf-0.6.3_5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> pycdf-0.6.3_5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of pycdf-0.6.3_5 =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The pycdf port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by pycdf-0.6.3_5 for building =========================================================================== =================================================== ===> NOTICE: The pycdf port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by pycdf-0.6.3_5 for building => SHA256 Checksum OK for pycdf-0.6-3b.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The pycdf port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by pycdf-0.6.3_5 for building ===> Extracting for pycdf-0.6.3_5 => SHA256 Checksum OK for pycdf-0.6-3b.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for pycdf-0.6.3_5 ===> Applying ports patches for pycdf-0.6.3_5 =========================================================================== =================================================== ===> pycdf-0.6.3_5 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - not found ===> Installing existing package /packages/All/py27-numpy-1.11.1,1.txz Installing py27-numpy-1.11.1,1... `-- Installing python27-2.7.12... | `-- Installing expat-2.2.0... | `-- Extracting expat-2.2.0: .......... done | `-- Installing readline-6.3.8... | | `-- Installing indexinfo-0.2.5... | | `-- Extracting indexinfo-0.2.5: .... done | | `-- Installing ncurses-6.0_5... | | `-- Extracting ncurses-6.0_5: .......... done | `-- Extracting readline-6.3.8: .......... done | `-- Installing libffi-3.2.1... | `-- Extracting libffi-3.2.1: .......... done | `-- Installing libressl-2.4.3... | `-- Extracting libressl-2.4.3: .......... done | `-- Installing gettext-runtime-0.19.8.1... | `-- Extracting gettext-runtime-0.19.8.1: .......... done `-- Extracting python27-2.7.12: .......... done `-- Installing py27-setuptools27-23.1.0... `-- Extracting py27-setuptools27-23.1.0: .......... done `-- Installing lapack-3.5.0... | `-- Installing blas-3.5.0_3... | | `-- Installing gcc5-5.4.0... | | `-- Installing mpc-1.0.3... | | | `-- Installing gmp-5.1.3_3... | | | `-- Extracting gmp-5.1.3_3: .......... done | | | `-- Installing mpfr-3.1.5... | | | `-- Extracting mpfr-3.1.5: .......... done | | `-- Extracting mpc-1.0.3: ...... done | | `-- Installing binutils-2.27_4,1... | | `-- Extracting binutils-2.27_4,1: .......... done | | `-- Extracting gcc5-5.4.0: .......... done | `-- Extracting blas-3.5.0_3: ....... done `-- Extracting lapack-3.5.0: .......... done `-- Installing openblas-0.2.18_1,1... `-- Extracting openblas-0.2.18_1,1: ......... done `-- Installing suitesparse-4.0.2_4... `-- Extracting suitesparse-4.0.2_4: .......... done `-- Installing cblas-1.0_4... `-- Extracting cblas-1.0_4: ......... done Extracting py27-numpy-1.11.1,1: .......... done Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from gcc5-5.4.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_4: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> pycdf-0.6.3_5 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found ===> Returning to build of pycdf-0.6.3_5 ===> pycdf-0.6.3_5 depends on package: py27-setuptools27>0 - found ===> pycdf-0.6.3_5 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =================================================== ===> pycdf-0.6.3_5 depends on shared library: libnetcdf.so - not found ===> Installing existing package /packages/All/netcdf-4.4.0_2.txz Installing netcdf-4.4.0_2... `-- Installing pkgconf-1.0.1... `-- Extracting pkgconf-1.0.1: .......... done `-- Installing hdf-szip-2.1_2... `-- Extracting hdf-szip-2.1_2: ........ done `-- Installing hdf5-1.10.0... `-- Extracting hdf5-1.10.0: .......... done `-- Installing curl-7.50.3... | `-- Installing ca_root_nss-3.27... | `-- Extracting ca_root_nss-3.27: ....... done | `-- Installing krb5-1.14.4... | `-- Extracting krb5-1.14.4: .......... done `-- Extracting curl-7.50.3: .......... done Extracting netcdf-4.4.0_2: .......... done Message from ca_root_nss-3.27: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> pycdf-0.6.3_5 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> Returning to build of pycdf-0.6.3_5 =========================================================================== =================================================== ===> Configuring for pycdf-0.6.3_5 /usr/local/lib/python2.7/site-packages/setuptools/dist.py:294: UserWarning: The version specified ('0.6-3b') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version running config =========================================================================== =================================================== ===> Building for pycdf-0.6.3_5 /usr/local/lib/python2.7/site-packages/setuptools/dist.py:294: UserWarning: The version specified ('0.6-3b') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version running build running build_py creating build creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf copying pycdf/pycdf.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf copying pycdf/pycdfext.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf copying pycdf/pycdfext_array.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf copying pycdf/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf running build_ext building 'pycdf._pycdfext' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf/pycdfext creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf/pycdfext/numpy compile options: '-I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' Warning: Can't read registry to find the necessary compiler setting Make sure that Python modules _winreg, win32api or win32con are installed. cc: pycdf/pycdfext/numpy/pycdfext_wrap.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/oldnumeric.h:1, from pycdf/pycdfext/numpy/pycdfext_wrap.c:863: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -L/usr/local/lib -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf/pycdfext/numpy/pycdfext_wrap.o -L/usr/local/lib -L/usr/local/lib -lnetcdf -lpython2.7 -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf/_pycdfext.so =========================================================================== =================================================== ===> pycdf-0.6.3_5 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found ===> pycdf-0.6.3_5 depends on package: py27-setuptools27>0 - found ===> pycdf-0.6.3_5 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =================================================== ===> Staging for pycdf-0.6.3_5 ===> Generating temporary packing list /usr/local/lib/python2.7/site-packages/setuptools/dist.py:294: UserWarning: The version specified ('0.6-3b') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version running install running build running build_py copying pycdf/pycdfext.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf copying pycdf/pycdfext_array.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf running build_ext running install_lib creating /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7 creating /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7/site-packages creating /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf/_pycdfext.so -> /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf/__init__.py -> /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf/pycdfext_array.py -> /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf/pycdfext.py -> /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pycdf/pycdf.py -> /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf byte-compiling /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/pycdfext_array.py to pycdfext_array.pyc byte-compiling /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/pycdfext.py to pycdfext.pyc byte-compiling /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/pycdf.py to pycdf.pyc writing byte-compilation script '/tmp/tmp3czv1D.py' /usr/local/bin/python2.7 -O /tmp/tmp3czv1D.py removing /tmp/tmp3czv1D.py running install_egg_info running egg_info creating pycdf.egg-info writing pycdf.egg-info/PKG-INFO writing top-level names to pycdf.egg-info/top_level.txt writing dependency_links to pycdf.egg-info/dependency_links.txt writing manifest file 'pycdf.egg-info/SOURCES.txt' reading manifest file 'pycdf.egg-info/SOURCES.txt' writing manifest file 'pycdf.egg-info/SOURCES.txt' Copying pycdf.egg-info to /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf-0.6_3b-py2.7.egg-info running install_scripts writing list of installed files to '/wrkdirs/science/pycdf/.PLIST.pymodtmp' /usr/bin/strip /wrkdirs/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/_pycdfext.so ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for pycdf-0.6.3_5 file sizes/checksums [17]: . done packing files [17]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for pycdf-0.6.3_5 build of science/pycdf ended at Wed Oct 5 17:05:11 PDT 2016 build time: 00:00:51