=> Building math/libtsnnls build started at Tue Oct 4 23:05:55 PDT 2016 port directory: /usr/ports/math/libtsnnls building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: tzhuan@gmail.com ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../02//usr/ports/math/libtsnnls/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=libtsnnls-2.3.3_4 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for libtsnnls-2.3.3_4: ATLAS=off: Use atlas (conflict with USE_GOTOBLAS) GOTOBLAS=off: Use gotoblas (conflict with USE_ATLAS) ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --with-blas="-lblas" --with-lapack="-llapack" --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/math/libtsnnls XDG_CONFIG_HOME=/wrkdirs/math/libtsnnls HOME=/wrkdirs/math/libtsnnls TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/math/libtsnnls XDG_CONFIG_HOME=/wrkdirs/math/libtsnnls HOME=/wrkdirs/math/libtsnnls TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/libtsnnls" EXAMPLESDIR="share/examples/libtsnnls" DATADIR="share/libtsnnls" WWWDIR="www/libtsnnls" ETCDIR="etc/libtsnnls" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libtsnnls DOCSDIR=/usr/local/share/doc/libtsnnls EXAMPLESDIR=/usr/local/share/examples/libtsnnls WWWDIR=/usr/local/www/libtsnnls ETCDIR=/usr/local/etc/libtsnnls --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== =========================================================================== =================================================== ===> libtsnnls-2.3.3_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> libtsnnls-2.3.3_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libtsnnls-2.3.3_4 =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by libtsnnls-2.3.3_4 for building =========================================================================== =================================================== ===> Fetching all distfiles required by libtsnnls-2.3.3_4 for building => SHA256 Checksum OK for libtsnnls-2.3.3.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by libtsnnls-2.3.3_4 for building ===> Extracting for libtsnnls-2.3.3_4 => SHA256 Checksum OK for libtsnnls-2.3.3.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for libtsnnls-2.3.3_4 =========================================================================== =================================================== ===> libtsnnls-2.3.3_4 depends on executable: gfortran5 - not found ===> Installing existing package /packages/All/gcc5-5.4.0.txz Installing gcc5-5.4.0... `-- Installing indexinfo-0.2.5... `-- Extracting indexinfo-0.2.5: .... done `-- Installing mpc-1.0.3... | `-- Installing gmp-5.1.3_3... | `-- Extracting gmp-5.1.3_3: .......... done | `-- Installing mpfr-3.1.5... | `-- Extracting mpfr-3.1.5: .......... done `-- Extracting mpc-1.0.3: ...... done `-- Installing binutils-2.27_4,1... | `-- Installing gettext-runtime-0.19.8.1... | `-- Extracting gettext-runtime-0.19.8.1: .......... done `-- Extracting binutils-2.27_4,1: .......... done Extracting gcc5-5.4.0: .......... done Message from gcc5-5.4.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> libtsnnls-2.3.3_4 depends on executable: gfortran5 - found ===> Returning to build of libtsnnls-2.3.3_4 ===> libtsnnls-2.3.3_4 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== ===> libtsnnls-2.3.3_4 depends on shared library: libblas.so - not found ===> Installing existing package /packages/All/blas-3.5.0_3.txz Installing blas-3.5.0_3... Extracting blas-3.5.0_3: ....... done ===> libtsnnls-2.3.3_4 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> Returning to build of libtsnnls-2.3.3_4 ===> libtsnnls-2.3.3_4 depends on shared library: liblapack.so - not found ===> Installing existing package /packages/All/lapack-3.5.0.txz Installing lapack-3.5.0... Extracting lapack-3.5.0: .......... done ===> libtsnnls-2.3.3_4 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> Returning to build of libtsnnls-2.3.3_4 =========================================================================== =================================================== ===> Configuring for libtsnnls-2.3.3_4 configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking for gcc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking build system type... x86_64-portbld-dragonfly4.7 checking host system type... x86_64-portbld-dragonfly4.7 checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ld used by cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for /usr/local/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/local/bin/nm checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking how to run the C++ preprocessor... c++ -E checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran5 accepts -g... yes checking the maximum length of command line arguments... (cached) 262144 checking command to parse /usr/local/bin/nm output from cc object... ok checking for objdir... .libs checking for ar... /usr/local/bin/ar checking for ranlib... /usr/local/bin/ranlib checking for strip... strip checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC checking if cc PIC flag -fPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly4.7 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by c++... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC checking if c++ PIC flag -fPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly4.7 ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran5 option to produce PIC... -fPIC checking if gfortran5 PIC flag -fPIC works... yes checking if gfortran5 static flag -static works... yes checking if gfortran5 supports -c -o file.o... yes checking whether the gfortran5 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly4.7 ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for memset... (cached) yes checking for memcpy... (cached) yes checking for rand... (cached) yes checking for srand... (cached) yes checking for time... (cached) yes checking for isnormal... no checking for isnan... yes checking whether we are using the GNU Fortran compiler... yes checking whether gfortran5 accepts -g... yes checking how to get verbose linking output from gfortran5... -v checking for Fortran libraries of gfortran5... -L/usr/local/lib -L/usr/local/lib/gcc5 -L/usr/local/bin -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0 -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0/../../../../../x86_64-portbld-dragonfly4.7/lib -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0/../../.. -lgfortran -lm -lquadmath checking host system type... (cached) x86_64-portbld-dragonfly4.7 checking how to link with BLAS and LAPACK... linux checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for sgemm_ in -lblas... yes checking for cheev_ in -llapack... yes checking for minimal ATLAS lapack... checking name of daxpy after mangling... daxpy_ checking name of dsyrk after mangling... dsyrk_ checking name of dsymv after mangling... dsymv_ checking name of dgemm after mangling... dgemm_ checking name of dgemv after mangling... dgemv_ checking name of dtrsm after mangling... dtrsm_ checking name of dpotrf after mangling... dpotrf_ checking name of dgels after mangling... dgels_ checking name of dnrm2 after mangling... dnrm2_ checking name of ddot after mangling... ddot_ checking name of dscal after mangling... dscal_ checking for arg_parse in -largtable2... no checking for ANSI C header files... (cached) yes checking clapack.h usability... no checking clapack.h presence... no checking for clapack.h... no checking vecLib/clapack.h usability... no checking vecLib/clapack.h presence... no checking for vecLib/clapack.h... no checking atlas/clapack.h usability... no checking atlas/clapack.h presence... no checking for atlas/clapack.h... no checking for string.h... (cached) yes checking for float.h... (cached) yes checking for stdlib.h... (cached) yes checking for stdio.h... (cached) yes checking for sys/time.h... (cached) yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for limits.h... (cached) yes checking for math.h... (cached) yes checking for time.h... (cached) yes checking for ctype.h... (cached) yes checking argtable2.h usability... no checking argtable2.h presence... no checking for argtable2.h... no checking for an ANSI C-conforming const... yes checking size of int... 4 checking size of long int... 8 checking size of double *... 8 checking for inline... inline checking for an ANSI C-conforming const... (cached) yes checking if malloc debugging is wanted... no configure: creating ./config.status config.status: creating tsnnls-libs config.status: creating Makefile config.status: creating tsnnls/Makefile config.status: creating tsnnls/taucs_basic/Makefile config.status: creating config.h config.status: executing depfiles commands =========================================================================== =================================================== ===> Building for libtsnnls-2.3.3_4 --- all --- /usr/bin/make all-recursive --- all-recursive --- Making all in tsnnls --- all-recursive --- Making all in taucs_basic --- taucs_logging.lo --- --- taucs_malloc.lo --- --- taucs_ccs_order.lo --- --- taucs_ccs_ops.lo --- --- taucs_vec_base.lo --- --- taucs_ccs_order.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_ccs_order.lo -MD -MP -MF .deps/taucs_ccs_order.Tpo -c -o taucs_ccs_order.lo `test -f 'taucs_basic/taucs_ccs_order.c' || echo './'`taucs_basic/taucs_ccs_order.c --- taucs_malloc.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_malloc.lo -MD -MP -MF .deps/taucs_malloc.Tpo -c -o taucs_malloc.lo `test -f 'taucs_basic/taucs_malloc.c' || echo './'`taucs_basic/taucs_malloc.c --- taucs_ccs_ops.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_ccs_ops.lo -MD -MP -MF .deps/taucs_ccs_ops.Tpo -c -o taucs_ccs_ops.lo `test -f 'taucs_basic/taucs_ccs_ops.c' || echo './'`taucs_basic/taucs_ccs_ops.c --- taucs_logging.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_logging.lo -MD -MP -MF .deps/taucs_logging.Tpo -c -o taucs_logging.lo `test -f 'taucs_basic/taucs_logging.c' || echo './'`taucs_basic/taucs_logging.c --- taucs_vec_base.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_vec_base.lo -MD -MP -MF .deps/taucs_vec_base.Tpo -c -o taucs_vec_base.lo `test -f 'taucs_basic/taucs_vec_base.c' || echo './'`taucs_basic/taucs_vec_base.c --- taucs_logging.lo --- mkdir .libs cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_logging.lo -MD -MP -MF .deps/taucs_logging.Tpo -c taucs_basic/taucs_logging.c -fPIC -DPIC -o .libs/taucs_logging.o --- taucs_ccs_order.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_ccs_order.lo -MD -MP -MF .deps/taucs_ccs_order.Tpo -c taucs_basic/taucs_ccs_order.c -fPIC -DPIC -o .libs/taucs_ccs_order.o --- taucs_ccs_ops.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_ccs_ops.lo -MD -MP -MF .deps/taucs_ccs_ops.Tpo -c taucs_basic/taucs_ccs_ops.c -fPIC -DPIC -o .libs/taucs_ccs_ops.o --- taucs_logging.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_logging.lo -MD -MP -MF .deps/taucs_logging.Tpo -c taucs_basic/taucs_logging.c -o taucs_logging.o >/dev/null 2>&1 --- taucs_malloc.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_malloc.lo -MD -MP -MF .deps/taucs_malloc.Tpo -c taucs_basic/taucs_malloc.c -fPIC -DPIC -o .libs/taucs_malloc.o --- taucs_ccs_order.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_ccs_order.lo -MD -MP -MF .deps/taucs_ccs_order.Tpo -c taucs_basic/taucs_ccs_order.c -o taucs_ccs_order.o >/dev/null 2>&1 --- taucs_logging.lo --- mv -f .deps/taucs_logging.Tpo .deps/taucs_logging.Plo --- taucs_complex.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_complex.lo -MD -MP -MF .deps/taucs_complex.Tpo -c -o taucs_complex.lo `test -f 'taucs_basic/taucs_complex.c' || echo './'`taucs_basic/taucs_complex.c --- taucs_malloc.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_malloc.lo -MD -MP -MF .deps/taucs_malloc.Tpo -c taucs_basic/taucs_malloc.c -o taucs_malloc.o >/dev/null 2>&1 --- taucs_ccs_ops.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_ccs_ops.lo -MD -MP -MF .deps/taucs_ccs_ops.Tpo -c taucs_basic/taucs_ccs_ops.c -o taucs_ccs_ops.o >/dev/null 2>&1 --- taucs_malloc.lo --- mv -f .deps/taucs_malloc.Tpo .deps/taucs_malloc.Plo --- taucs_vec_base.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_vec_base.lo -MD -MP -MF .deps/taucs_vec_base.Tpo -c taucs_basic/taucs_vec_base.c -fPIC -DPIC -o .libs/taucs_vec_base.o --- colamd.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT colamd.lo -MD -MP -MF .deps/colamd.Tpo -c -o colamd.lo `test -f 'taucs_basic/colamd.c' || echo './'`taucs_basic/colamd.c --- taucs_ccs_order.lo --- mv -f .deps/taucs_ccs_order.Tpo .deps/taucs_ccs_order.Plo --- amdbar.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT amdbar.lo -MD -MP -MF .deps/amdbar.Tpo -c -o amdbar.lo `test -f 'taucs_basic/amdbar.c' || echo './'`taucs_basic/amdbar.c --- taucs_vec_base.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_vec_base.lo -MD -MP -MF .deps/taucs_vec_base.Tpo -c taucs_basic/taucs_vec_base.c -o taucs_vec_base.o >/dev/null 2>&1 --- taucs_ccs_ops.lo --- mv -f .deps/taucs_ccs_ops.Tpo .deps/taucs_ccs_ops.Plo --- amdexa.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT amdexa.lo -MD -MP -MF .deps/amdexa.Tpo -c -o amdexa.lo `test -f 'taucs_basic/amdexa.c' || echo './'`taucs_basic/amdexa.c --- taucs_vec_base.lo --- mv -f .deps/taucs_vec_base.Tpo .deps/taucs_vec_base.Plo --- amdtru.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT amdtru.lo -MD -MP -MF .deps/amdtru.Tpo -c -o amdtru.lo `test -f 'taucs_basic/amdtru.c' || echo './'`taucs_basic/amdtru.c --- colamd.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT colamd.lo -MD -MP -MF .deps/colamd.Tpo -c taucs_basic/colamd.c -fPIC -DPIC -o .libs/colamd.o --- amdbar.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT amdbar.lo -MD -MP -MF .deps/amdbar.Tpo -c taucs_basic/amdbar.c -fPIC -DPIC -o .libs/amdbar.o --- amdexa.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT amdexa.lo -MD -MP -MF .deps/amdexa.Tpo -c taucs_basic/amdexa.c -fPIC -DPIC -o .libs/amdexa.o --- taucs_complex.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_complex.lo -MD -MP -MF .deps/taucs_complex.Tpo -c taucs_basic/taucs_complex.c -fPIC -DPIC -o .libs/taucs_complex.o --- amdtru.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT amdtru.lo -MD -MP -MF .deps/amdtru.Tpo -c taucs_basic/amdtru.c -fPIC -DPIC -o .libs/amdtru.o --- amdexa.lo --- taucs_basic/amdexa.c: In function 'amdexa_': taucs_basic/amdexa.c:19:28: warning: variable 'nleft' set but not used [-Wunused-but-set-variable] i, j, k, p, degme, x, nleft, ilast, jlast, inext, jnext, p1, ^ taucs_basic/amdexa.c:18:44: warning: variable 'dmax_' set but not used [-Wunused-but-set-variable] static integer hash, pend, hmod, lenj, dmax_, wbig, wflg, psrc, pdst, e, ^ --- amdtru.lo --- taucs_basic/amdtru.c: In function 'amdtru_': taucs_basic/amdtru.c:19:28: warning: variable 'nleft' set but not used [-Wunused-but-set-variable] i, j, k, p, degme, x, nleft, ilast, jlast, inext, jnext, p1, ^ taucs_basic/amdtru.c:18:44: warning: variable 'dmax_' set but not used [-Wunused-but-set-variable] static integer hash, pend, hmod, lenj, dmax_, wbig, wflg, psrc, pdst, e, ^ --- taucs_complex.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_complex.lo -MD -MP -MF .deps/taucs_complex.Tpo -c taucs_basic/taucs_complex.c -o taucs_complex.o >/dev/null 2>&1 --- amdexa.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT amdexa.lo -MD -MP -MF .deps/amdexa.Tpo -c taucs_basic/amdexa.c -o amdexa.o >/dev/null 2>&1 --- amdtru.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT amdtru.lo -MD -MP -MF .deps/amdtru.Tpo -c taucs_basic/amdtru.c -o amdtru.o >/dev/null 2>&1 --- taucs_complex.lo --- mv -f .deps/taucs_complex.Tpo .deps/taucs_complex.Plo --- genmmd.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT genmmd.lo -MD -MP -MF .deps/genmmd.Tpo -c -o genmmd.lo `test -f 'taucs_basic/genmmd.c' || echo './'`taucs_basic/genmmd.c --- amdexa.lo --- mv -f .deps/amdexa.Tpo .deps/amdexa.Plo --- taucs_timer.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_timer.lo -MD -MP -MF .deps/taucs_timer.Tpo -c -o taucs_timer.lo `test -f 'taucs_basic/taucs_timer.c' || echo './'`taucs_basic/taucs_timer.c --- colamd.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT colamd.lo -MD -MP -MF .deps/colamd.Tpo -c taucs_basic/colamd.c -o colamd.o >/dev/null 2>&1 --- amdbar.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT amdbar.lo -MD -MP -MF .deps/amdbar.Tpo -c taucs_basic/amdbar.c -o amdbar.o >/dev/null 2>&1 --- amdtru.lo --- mv -f .deps/amdtru.Tpo .deps/amdtru.Plo --- taucs_sn_llt.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_sn_llt.lo -MD -MP -MF .deps/taucs_sn_llt.Tpo -c -o taucs_sn_llt.lo `test -f 'taucs_basic/taucs_sn_llt.c' || echo './'`taucs_basic/taucs_sn_llt.c --- amdbar.lo --- mv -f .deps/amdbar.Tpo .deps/amdbar.Plo --- genmmd.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT genmmd.lo -MD -MP -MF .deps/genmmd.Tpo -c taucs_basic/genmmd.c -fPIC -DPIC -o .libs/genmmd.o --- taucs_ccs_base.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_ccs_base.lo -MD -MP -MF .deps/taucs_ccs_base.Tpo -c -o taucs_ccs_base.lo `test -f 'taucs_basic/taucs_ccs_base.c' || echo './'`taucs_basic/taucs_ccs_base.c --- colamd.lo --- mv -f .deps/colamd.Tpo .deps/colamd.Plo --- tlsqr.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT tlsqr.lo -MD -MP -MF .deps/tlsqr.Tpo -c -o tlsqr.lo tlsqr.c --- genmmd.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT genmmd.lo -MD -MP -MF .deps/genmmd.Tpo -c taucs_basic/genmmd.c -o genmmd.o >/dev/null 2>&1 mv -f .deps/genmmd.Tpo .deps/genmmd.Plo --- tsnnls.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT tsnnls.lo -MD -MP -MF .deps/tsnnls.Tpo -c -o tsnnls.lo tsnnls.c --- taucs_timer.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_timer.lo -MD -MP -MF .deps/taucs_timer.Tpo -c taucs_basic/taucs_timer.c -fPIC -DPIC -o .libs/taucs_timer.o --- taucs_sn_llt.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_sn_llt.lo -MD -MP -MF .deps/taucs_sn_llt.Tpo -c taucs_basic/taucs_sn_llt.c -fPIC -DPIC -o .libs/taucs_sn_llt.o --- taucs_ccs_base.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_ccs_base.lo -MD -MP -MF .deps/taucs_ccs_base.Tpo -c taucs_basic/taucs_ccs_base.c -fPIC -DPIC -o .libs/taucs_ccs_base.o --- taucs_sn_llt.lo --- taucs_basic/taucs_sn_llt.c: In function 'recursive_multifrontal_supernodal_factor_llt_caller': taucs_basic/taucs_sn_llt.c:2007:30: warning: variable 'always_null' set but not used [-Wunused-but-set-variable] supernodal_frontal_matrix* always_null; ^ taucs_basic/taucs_sn_llt.c: In function 'recursive_leftlooking_supernodal_factor_llt': taucs_basic/taucs_sn_llt.c:2438:8: warning: variable 'sn_size' set but not used [-Wunused-but-set-variable] int sn_size; ^ --- taucs_ccs_base.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_ccs_base.lo -MD -MP -MF .deps/taucs_ccs_base.Tpo -c taucs_basic/taucs_ccs_base.c -o taucs_ccs_base.o >/dev/null 2>&1 --- taucs_sn_llt.lo --- taucs_basic/taucs_sn_llt.c: At top level: taucs_basic/taucs_sn_llt.c:1344:1: warning: 'tree_first_descendant' defined but not used [-Wunused-function] tree_first_descendant(int j, ^ --- taucs_timer.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_timer.lo -MD -MP -MF .deps/taucs_timer.Tpo -c taucs_basic/taucs_timer.c -o taucs_timer.o >/dev/null 2>&1 --- taucs_ccs_base.lo --- mv -f .deps/taucs_ccs_base.Tpo .deps/taucs_ccs_base.Plo --- lsqr.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT lsqr.lo -MD -MP -MF .deps/lsqr.Tpo -c -o lsqr.lo lsqr.c --- taucs_timer.lo --- mv -f .deps/taucs_timer.Tpo .deps/taucs_timer.Plo --- tsnnls.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT tsnnls.lo -MD -MP -MF .deps/tsnnls.Tpo -c tsnnls.c -fPIC -DPIC -o .libs/tsnnls.o --- tlsqr.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT tlsqr.lo -MD -MP -MF .deps/tlsqr.Tpo -c tlsqr.c -fPIC -DPIC -o .libs/tlsqr.o --- tsnnls.lo --- tsnnls.c: In function 'sparse_lsqr_mult': tsnnls.c:523:17: warning: variable 'rows' set but not used [-Wunused-but-set-variable] int i,ip,j,n, rows; ^ tsnnls.c: In function 't_snnls_pjv': tsnnls.c:608:7: warning: variable 'AprimeDotA_cols' set but not used [-Wunused-but-set-variable] int AprimeDotA_cols; ^ tsnnls.c:591:10: warning: variable 'A_rows' set but not used [-Wunused-but-set-variable] int A_rows, A_cols; ^ tsnnls.c: In function 't_snnls': tsnnls.c:1123:7: warning: variable 'AprimeDotA_cols' set but not used [-Wunused-but-set-variable] int AprimeDotA_cols; ^ tsnnls.c: In function 'computep': tsnnls.c:2735:10: warning: variable 'checknorm' set but not used [-Wunused-but-set-variable] double checknorm; ^ tsnnls.c: In function 'release_miny': tsnnls.c:2830:10: warning: variable 'miny' set but not used [-Wunused-but-set-variable] double miny; ^ tsnnls.c: In function 't_snnls_spiv': tsnnls.c:2981:20: warning: variable 'alpha' set but not used [-Wunused-but-set-variable] double alpha = 0; ^ --- tlsqr.lo --- tlsqr.c: In function 'full_aprime_times_a': tlsqr.c:118:19: warning: variable 'colOffset' set but not used [-Wunused-but-set-variable] int rItr, cItr, colOffset; ^ --- tsnnls.lo --- tsnnls.c: In function 'taucs_ccs_write_dat': tsnnls.c:2410:3: warning: 'rows' is used uninitialized in this function [-Wuninitialized] fprintf(fp, ^ tsnnls.c:2410:3: warning: 'cols' is used uninitialized in this function [-Wuninitialized] --- lsqr.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT lsqr.lo -MD -MP -MF .deps/lsqr.Tpo -c lsqr.c -fPIC -DPIC -o .libs/lsqr.o --- tlsqr.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT tlsqr.lo -MD -MP -MF .deps/tlsqr.Tpo -c tlsqr.c -o tlsqr.o >/dev/null 2>&1 --- lsqr.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT lsqr.lo -MD -MP -MF .deps/lsqr.Tpo -c lsqr.c -o lsqr.o >/dev/null 2>&1 --- tlsqr.lo --- mv -f .deps/tlsqr.Tpo .deps/tlsqr.Plo --- lsqr.lo --- mv -f .deps/lsqr.Tpo .deps/lsqr.Plo --- taucs_sn_llt.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT taucs_sn_llt.lo -MD -MP -MF .deps/taucs_sn_llt.Tpo -c taucs_basic/taucs_sn_llt.c -o taucs_sn_llt.o >/dev/null 2>&1 --- tsnnls.lo --- cc -DHAVE_CONFIG_H -I. -I.. -g -Wall -pipe -fno-strict-aliasing -MT tsnnls.lo -MD -MP -MF .deps/tsnnls.Tpo -c tsnnls.c -o tsnnls.o >/dev/null 2>&1 --- taucs_sn_llt.lo --- mv -f .deps/taucs_sn_llt.Tpo .deps/taucs_sn_llt.Plo --- tsnnls.lo --- mv -f .deps/tsnnls.Tpo .deps/tsnnls.Plo --- libtsnnls.la --- /bin/sh ../libtool --tag=CC --mode=link cc -g -Wall -pipe -fno-strict-aliasing -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -o libtsnnls.la -rpath /usr/local/lib taucs_logging.lo taucs_malloc.lo taucs_ccs_order.lo taucs_ccs_ops.lo taucs_vec_base.lo taucs_complex.lo colamd.lo amdbar.lo amdexa.lo amdtru.lo genmmd.lo taucs_timer.lo taucs_sn_llt.lo taucs_ccs_base.lo tlsqr.lo tsnnls.lo lsqr.lo -lm -L/usr/local/lib -L/usr/local/lib/gcc5 -L/usr/local/bin -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0 -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0/../../../../../x86_64-portbld-dragonfly4.7/lib -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0/../../.. -lgfortran -lm -lquadmath -lm cc -shared .libs/taucs_logging.o .libs/taucs_malloc.o .libs/taucs_ccs_order.o .libs/taucs_ccs_ops.o .libs/taucs_vec_base.o .libs/taucs_complex.o .libs/colamd.o .libs/amdbar.o .libs/amdexa.o .libs/amdtru.o .libs/genmmd.o .libs/taucs_timer.o .libs/taucs_sn_llt.o .libs/taucs_ccs_base.o .libs/tlsqr.o .libs/tsnnls.o .libs/lsqr.o -L/usr/local/lib -L/usr/local/lib/gcc5 -L/usr/local/bin -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0 -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0/../../../../../x86_64-portbld-dragonfly4.7/lib -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0/../../.. -lgfortran -lquadmath -lm -Wl,-rpath=/usr/local/lib/gcc5 -Wl,-soname -Wl,libtsnnls.so.0 -o .libs/libtsnnls.so.0.0.0 (cd .libs && rm -f libtsnnls.so.0 && ln -s libtsnnls.so.0.0.0 libtsnnls.so.0) (cd .libs && rm -f libtsnnls.so && ln -s libtsnnls.so.0.0.0 libtsnnls.so) /usr/local/bin/ar cru .libs/libtsnnls.a taucs_logging.o taucs_malloc.o taucs_ccs_order.o taucs_ccs_ops.o taucs_vec_base.o taucs_complex.o colamd.o amdbar.o amdexa.o amdtru.o genmmd.o taucs_timer.o taucs_sn_llt.o taucs_ccs_base.o tlsqr.o tsnnls.o lsqr.o /usr/local/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/local/bin/ranlib .libs/libtsnnls.a creating libtsnnls.la (cd .libs && rm -f libtsnnls.la && ln -s ../libtsnnls.la libtsnnls.la) =========================================================================== =================================================== ===> libtsnnls-2.3.3_4 depends on executable: gfortran5 - found =========================================================================== =================================================== ===> Staging for libtsnnls-2.3.3_4 ===> Generating temporary packing list Making install in tsnnls Making install in taucs_basic test -z "/usr/local/lib" || /bin/mkdir -p "/wrkdirs/math/libtsnnls/stage/usr/local/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c 'libtsnnls.la' '/wrkdirs/math/libtsnnls/stage/usr/local/lib/libtsnnls.la' /usr/bin/install -c .libs/libtsnnls.so.0.0.0 /wrkdirs/math/libtsnnls/stage/usr/local/lib/libtsnnls.so.0.0.0 (cd /wrkdirs/math/libtsnnls/stage/usr/local/lib && { ln -s -f libtsnnls.so.0.0.0 libtsnnls.so.0 || { rm -f libtsnnls.so.0 && ln -s libtsnnls.so.0.0.0 libtsnnls.so.0; }; }) (cd /wrkdirs/math/libtsnnls/stage/usr/local/lib && { ln -s -f libtsnnls.so.0.0.0 libtsnnls.so || { rm -f libtsnnls.so && ln -s libtsnnls.so.0.0.0 libtsnnls.so; }; }) /usr/bin/install -c .libs/libtsnnls.lai /wrkdirs/math/libtsnnls/stage/usr/local/lib/libtsnnls.la /usr/bin/install -c .libs/libtsnnls.a /wrkdirs/math/libtsnnls/stage/usr/local/lib/libtsnnls.a chmod 644 /wrkdirs/math/libtsnnls/stage/usr/local/lib/libtsnnls.a /usr/local/bin/ranlib /wrkdirs/math/libtsnnls/stage/usr/local/lib/libtsnnls.a libtool: install: warning: remember to run `libtool --finish /usr/local/lib' test -z "/usr/local/bin" || /bin/mkdir -p "/wrkdirs/math/libtsnnls/stage/usr/local/bin" test -z "/usr/local/include/libtsnnls" || /bin/mkdir -p "/wrkdirs/math/libtsnnls/stage/usr/local/include/libtsnnls" /bin/sh /wrkdirs/math/libtsnnls/libtsnnls-2.3.3/install-sh -c -m 644 'taucs_basic/taucs.h' '/wrkdirs/math/libtsnnls/stage/usr/local/include/libtsnnls/taucs_basic/taucs.h' /bin/sh /wrkdirs/math/libtsnnls/libtsnnls-2.3.3/install-sh -c -m 644 'taucs_basic/colamd.h' '/wrkdirs/math/libtsnnls/stage/usr/local/include/libtsnnls/taucs_basic/colamd.h' /bin/sh /wrkdirs/math/libtsnnls/libtsnnls-2.3.3/install-sh -c -m 644 'taucs_basic/f2c.h' '/wrkdirs/math/libtsnnls/stage/usr/local/include/libtsnnls/taucs_basic/f2c.h' /bin/sh /wrkdirs/math/libtsnnls/libtsnnls-2.3.3/install-sh -c -m 644 'taucs_basic/taucs_config_build.h' '/wrkdirs/math/libtsnnls/stage/usr/local/include/libtsnnls/taucs_basic/taucs_config_build.h' /bin/sh /wrkdirs/math/libtsnnls/libtsnnls-2.3.3/install-sh -c -m 644 'taucs_basic/taucs_config_tests.h' '/wrkdirs/math/libtsnnls/stage/usr/local/include/libtsnnls/taucs_basic/taucs_config_tests.h' /bin/sh /wrkdirs/math/libtsnnls/libtsnnls-2.3.3/install-sh -c -m 644 'taucs_basic/taucs_private.h' '/wrkdirs/math/libtsnnls/stage/usr/local/include/libtsnnls/taucs_basic/taucs_private.h' test -z "/usr/local/include/libtsnnls" || /bin/mkdir -p "/wrkdirs/math/libtsnnls/stage/usr/local/include/libtsnnls" install -m 0644 'tsnnls.h' '/wrkdirs/math/libtsnnls/stage/usr/local/include/libtsnnls/tsnnls.h' install -m 0644 'lsqr.h' '/wrkdirs/math/libtsnnls/stage/usr/local/include/libtsnnls/lsqr.h' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for libtsnnls-2.3.3_4 file sizes/checksums [12]: . done packing files [12]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for libtsnnls-2.3.3_4 build of math/libtsnnls ended at Tue Oct 4 23:06:53 PDT 2016 build time: 00:00:58