=> Building science/ghmm build started at Wed Oct 5 19:47:30 PDT 2016 port directory: /usr/ports/science/ghmm building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: ports@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../03//usr/ports/science/ghmm/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=ghmm-0.9.r3 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --without-python --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/science/ghmm XDG_CONFIG_HOME=/wrkdirs/science/ghmm HOME=/wrkdirs/science/ghmm TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/science/ghmm XDG_CONFIG_HOME=/wrkdirs/science/ghmm HOME=/wrkdirs/science/ghmm TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/ghmm" EXAMPLESDIR="share/examples/ghmm" DATADIR="share/ghmm" WWWDIR="www/ghmm" ETCDIR="etc/ghmm" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ghmm DOCSDIR=/usr/local/share/doc/ghmm EXAMPLESDIR=/usr/local/share/examples/ghmm WWWDIR=/usr/local/www/ghmm ETCDIR=/usr/local/etc/ghmm --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> NOTICE: The ghmm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> ghmm-0.9.r3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> ghmm-0.9.r3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ghmm-0.9.r3 =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The ghmm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by ghmm-0.9.r3 for building =========================================================================== =================================================== ===> NOTICE: The ghmm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by ghmm-0.9.r3 for building => SHA256 Checksum OK for ghmm-0.9-rc3.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The ghmm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by ghmm-0.9.r3 for building ===> Extracting for ghmm-0.9.r3 => SHA256 Checksum OK for ghmm-0.9-rc3.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for ghmm-0.9.r3 =========================================================================== =================================================== ===> ghmm-0.9.r3 depends on executable: autoconf-2.69 - not found ===> Installing existing package /packages/All/autoconf-2.69_1.txz Installing autoconf-2.69_1... `-- Installing indexinfo-0.2.5... `-- Extracting indexinfo-0.2.5: .... done `-- Installing autoconf-wrapper-20131203... `-- Extracting autoconf-wrapper-20131203: ........ done `-- Installing perl5-5.20.3_15... `-- Extracting perl5-5.20.3_15: .......... done `-- Installing m4-1.4.17_1,1... `-- Extracting m4-1.4.17_1,1: .......... done Extracting autoconf-2.69_1: .......... done Message from perl5-5.20.3_15: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> ghmm-0.9.r3 depends on executable: autoconf-2.69 - found ===> Returning to build of ghmm-0.9.r3 ===> ghmm-0.9.r3 depends on executable: autoheader-2.69 - found ===> ghmm-0.9.r3 depends on executable: autoreconf-2.69 - found ===> ghmm-0.9.r3 depends on executable: aclocal-1.15 - not found ===> Installing existing package /packages/All/automake-1.15_1.txz Installing automake-1.15_1... `-- Installing automake-wrapper-20131203... `-- Extracting automake-wrapper-20131203: ... done Extracting automake-1.15_1: .......... done ===> ghmm-0.9.r3 depends on executable: aclocal-1.15 - found ===> Returning to build of ghmm-0.9.r3 ===> ghmm-0.9.r3 depends on executable: automake-1.15 - found ===> ghmm-0.9.r3 depends on executable: libtoolize - not found ===> Installing existing package /packages/All/libtool-2.4.6.txz Installing libtool-2.4.6... Extracting libtool-2.4.6: .......... done ===> ghmm-0.9.r3 depends on executable: libtoolize - found ===> Returning to build of ghmm-0.9.r3 ===> ghmm-0.9.r3 depends on package: pkgconf>=0.9.10 - not found ===> Installing existing package /packages/All/pkgconf-1.0.1.txz Installing pkgconf-1.0.1... Extracting pkgconf-1.0.1: .......... done ===> ghmm-0.9.r3 depends on package: pkgconf>=0.9.10 - found ===> Returning to build of ghmm-0.9.r3 =========================================================================== =================================================== ===> ghmm-0.9.r3 depends on shared library: libxml2.so - not found ===> Installing existing package /packages/All/libxml2-2.9.4.txz Installing libxml2-2.9.4... Extracting libxml2-2.9.4: .......... done ===> ghmm-0.9.r3 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Returning to build of ghmm-0.9.r3 =========================================================================== =================================================== ===> Configuring for ghmm-0.9.r3 aclocal-1.15: warning: autoconf input should be named 'configure.ac', not 'configure.in' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.in, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. aclocal-1.15: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake-1.15: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:62: installing './compile' configure.in:49: installing './missing' ghmm/Makefile.am:77: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake-1.15: warning: autoconf input should be named 'configure.ac', not 'configure.in' ghmm/Makefile.am: installing './depcomp' tests/Makefile.am:51: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') parallel-tests: installing './test-driver' tools/Makefile.am:48: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking build system type... x86_64-portbld-dragonfly4.7 checking host system type... x86_64-portbld-dragonfly4.7 checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking how to convert x86_64-portbld-dragonfly4.7 file names to x86_64-portbld-dragonfly4.7 format... func_convert_file_noop checking how to convert x86_64-portbld-dragonfly4.7 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly4.7 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) /usr/bin/awk checking for doxygen... no checking for rm... /bin/rm checking for pkg-config... /usr/local/bin/pkg-config checking for expect... no checking for runtest... no configure: obsolete features disabled configure: unsupported features disabled checking for pthread_join in -lpthread... yes checking for ANSI C header files... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... (cached) yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for sqrt in -lm... yes checking for exp in -lm... yes checking for pow in -lm... yes configure: "not using gsl" checking for cos in -lm... yes configure: "not using diagonal covariance matrix hack" configure: "not using lapack" configure: using internal Mersenne-Twister random number generator checking libxml2 version... ... ok checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating ghmm/Makefile config.status: creating ghmm/ghmmconfig.h config.status: creating tools/Makefile config.status: creating tests/Makefile config.status: creating tests/data/Makefile config.status: creating tools/ghmm-config config.status: creating ghmmwrapper/Makefile config.status: creating HMMEd/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands rm: libtoolT: No such file or directory =========================================================================== =================================================== ===> Building for ghmm-0.9.r3 --- all --- /usr/bin/make all-recursive --- all-recursive --- Making all in ghmm --- all-recursive --- Making all in . --- rng.lo --- --- randvar.lo --- --- matrixop.lo --- --- gauss_tail.lo --- --- mes.lo --- --- rng.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT rng.lo -MD -MP -MF .deps/rng.Tpo -c -o rng.lo rng.c --- randvar.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT randvar.lo -MD -MP -MF .deps/randvar.Tpo -c -o randvar.lo randvar.c --- matrixop.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT matrixop.lo -MD -MP -MF .deps/matrixop.Tpo -c -o matrixop.lo matrixop.c --- gauss_tail.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT gauss_tail.lo -MD -MP -MF .deps/gauss_tail.Tpo -c -o gauss_tail.lo gauss_tail.c --- mes.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mes.lo -MD -MP -MF .deps/mes.Tpo -c -o mes.lo mes.c --- matrixop.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT matrixop.lo -MD -MP -MF .deps/matrixop.Tpo -c matrixop.c -fPIC -DPIC -o .libs/matrixop.o --- gauss_tail.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT gauss_tail.lo -MD -MP -MF .deps/gauss_tail.Tpo -c gauss_tail.c -fPIC -DPIC -o .libs/gauss_tail.o --- rng.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT rng.lo -MD -MP -MF .deps/rng.Tpo -c rng.c -fPIC -DPIC -o .libs/rng.o --- randvar.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT randvar.lo -MD -MP -MF .deps/randvar.Tpo -c randvar.c -fPIC -DPIC -o .libs/randvar.o --- gauss_tail.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT gauss_tail.lo -MD -MP -MF .deps/gauss_tail.Tpo -c gauss_tail.c -o gauss_tail.o >/dev/null 2>&1 --- matrixop.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT matrixop.lo -MD -MP -MF .deps/matrixop.Tpo -c matrixop.c -o matrixop.o >/dev/null 2>&1 --- gauss_tail.lo --- mv -f .deps/gauss_tail.Tpo .deps/gauss_tail.Plo --- ghmm_internals.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT ghmm_internals.lo -MD -MP -MF .deps/ghmm_internals.Tpo -c -o ghmm_internals.lo ghmm_internals.c --- rng.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT rng.lo -MD -MP -MF .deps/rng.Tpo -c rng.c -o rng.o >/dev/null 2>&1 mv -f .deps/rng.Tpo .deps/rng.Plo --- mprintf.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mprintf.lo -MD -MP -MF .deps/mprintf.Tpo -c -o mprintf.lo mprintf.c --- mes.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mes.lo -MD -MP -MF .deps/mes.Tpo -c mes.c -fPIC -DPIC -o .libs/mes.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mes.lo -MD -MP -MF .deps/mes.Tpo -c mes.c -o mes.o >/dev/null 2>&1 --- matrixop.lo --- mv -f .deps/matrixop.Tpo .deps/matrixop.Plo --- vector.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT vector.lo -MD -MP -MF .deps/vector.Tpo -c -o vector.lo vector.c --- randvar.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT randvar.lo -MD -MP -MF .deps/randvar.Tpo -c randvar.c -o randvar.o >/dev/null 2>&1 --- ghmm_internals.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT ghmm_internals.lo -MD -MP -MF .deps/ghmm_internals.Tpo -c ghmm_internals.c -fPIC -DPIC -o .libs/ghmm_internals.o --- mprintf.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mprintf.lo -MD -MP -MF .deps/mprintf.Tpo -c mprintf.c -fPIC -DPIC -o .libs/mprintf.o --- ghmm_internals.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT ghmm_internals.lo -MD -MP -MF .deps/ghmm_internals.Tpo -c ghmm_internals.c -o ghmm_internals.o >/dev/null 2>&1 mv -f .deps/ghmm_internals.Tpo .deps/ghmm_internals.Plo --- matrix.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c -o matrix.lo matrix.c --- vector.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT vector.lo -MD -MP -MF .deps/vector.Tpo -c vector.c -fPIC -DPIC -o .libs/vector.o --- randvar.lo --- mv -f .deps/randvar.Tpo .deps/randvar.Plo --- scanner.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scanner.lo -MD -MP -MF .deps/scanner.Tpo -c -o scanner.lo scanner.c --- matrix.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.c -fPIC -DPIC -o .libs/matrix.o --- vector.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT vector.lo -MD -MP -MF .deps/vector.Tpo -c vector.c -o vector.o >/dev/null 2>&1 --- scanner.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scanner.lo -MD -MP -MF .deps/scanner.Tpo -c scanner.c -fPIC -DPIC -o .libs/scanner.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scanner.lo -MD -MP -MF .deps/scanner.Tpo -c scanner.c -o scanner.o >/dev/null 2>&1 --- vector.lo --- mv -f .deps/vector.Tpo .deps/vector.Plo --- scanner.lo --- mv -f .deps/scanner.Tpo .deps/scanner.Plo --- linkedlist.lo --- --- sequence.lo --- --- linkedlist.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT linkedlist.lo -MD -MP -MF .deps/linkedlist.Tpo -c -o linkedlist.lo linkedlist.c --- sequence.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sequence.lo -MD -MP -MF .deps/sequence.Tpo -c -o sequence.lo sequence.c --- mprintf.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mprintf.lo -MD -MP -MF .deps/mprintf.Tpo -c mprintf.c -o mprintf.o >/dev/null 2>&1 --- matrix.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.c -o matrix.o >/dev/null 2>&1 --- mes.lo --- mv -f .deps/mes.Tpo .deps/mes.Plo --- psequence.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT psequence.lo -MD -MP -MF .deps/psequence.Tpo -c -o psequence.lo psequence.c --- sequence.lo --- libtool: 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-I/usr/local/include/libxml2 -MT psequence.lo -MD -MP -MF .deps/psequence.Tpo -c psequence.c -fPIC -DPIC -o .libs/psequence.o --- xmlreader.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT xmlreader.lo -MD -MP -MF .deps/xmlreader.Tpo -c -o xmlreader.lo xmlreader.c --- linkedlist.lo --- mv -f .deps/linkedlist.Tpo .deps/linkedlist.Plo --- xmlwriter.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT xmlwriter.lo -MD -MP -MF .deps/xmlwriter.Tpo -c -o xmlwriter.lo xmlwriter.c --- psequence.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT psequence.lo -MD -MP -MF .deps/psequence.Tpo -c psequence.c -o psequence.o >/dev/null 2>&1 --- xmlreader.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT xmlreader.lo -MD -MP -MF .deps/xmlreader.Tpo -c xmlreader.c -fPIC -DPIC -o .libs/xmlreader.o --- psequence.lo --- mv -f .deps/psequence.Tpo .deps/psequence.Plo --- model.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT model.lo -MD -MP -MF .deps/model.Tpo -c -o model.lo model.c --- xmlwriter.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT xmlwriter.lo -MD -MP -MF .deps/xmlwriter.Tpo -c xmlwriter.c -fPIC -DPIC -o .libs/xmlwriter.o --- mprintf.lo --- mv -f .deps/mprintf.Tpo .deps/mprintf.Plo --- foba.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT foba.lo -MD -MP -MF .deps/foba.Tpo -c -o foba.lo foba.c --- model.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT model.lo -MD -MP -MF .deps/model.Tpo -c model.c -fPIC -DPIC -o .libs/model.o --- foba.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT foba.lo -MD -MP -MF .deps/foba.Tpo -c foba.c -fPIC -DPIC -o .libs/foba.o --- sequence.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sequence.lo -MD -MP -MF .deps/sequence.Tpo -c sequence.c -o sequence.o >/dev/null 2>&1 --- xmlreader.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT xmlreader.lo -MD -MP -MF .deps/xmlreader.Tpo -c xmlreader.c -o xmlreader.o >/dev/null 2>&1 --- xmlwriter.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT xmlwriter.lo -MD -MP -MF .deps/xmlwriter.Tpo -c xmlwriter.c -o xmlwriter.o >/dev/null 2>&1 --- foba.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT foba.lo -MD -MP -MF .deps/foba.Tpo -c foba.c -o foba.o >/dev/null 2>&1 --- xmlreader.lo --- mv -f .deps/xmlreader.Tpo .deps/xmlreader.Plo --- viterbi.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT viterbi.lo -MD -MP -MF .deps/viterbi.Tpo -c -o viterbi.lo viterbi.c --- foba.lo --- mv -f .deps/foba.Tpo .deps/foba.Plo --- reestimate.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT reestimate.lo -MD -MP -MF .deps/reestimate.Tpo -c -o reestimate.lo reestimate.c --- sequence.lo --- mv -f .deps/sequence.Tpo .deps/sequence.Plo --- gradescent.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT gradescent.lo -MD -MP -MF .deps/gradescent.Tpo -c -o gradescent.lo gradescent.c --- viterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT viterbi.lo -MD -MP -MF .deps/viterbi.Tpo -c viterbi.c -fPIC -DPIC -o .libs/viterbi.o --- xmlwriter.lo --- mv -f .deps/xmlwriter.Tpo .deps/xmlwriter.Plo --- kbest.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT kbest.lo -MD -MP -MF .deps/kbest.Tpo -c -o kbest.lo kbest.c --- reestimate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT reestimate.lo -MD -MP -MF .deps/reestimate.Tpo -c reestimate.c -fPIC -DPIC -o .libs/reestimate.o --- gradescent.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT gradescent.lo -MD -MP -MF .deps/gradescent.Tpo -c gradescent.c -fPIC -DPIC -o .libs/gradescent.o --- kbest.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT kbest.lo -MD -MP -MF .deps/kbest.Tpo -c kbest.c -fPIC -DPIC -o .libs/kbest.o --- viterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT viterbi.lo -MD -MP -MF .deps/viterbi.Tpo -c viterbi.c -o viterbi.o >/dev/null 2>&1 --- gradescent.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT gradescent.lo -MD -MP -MF .deps/gradescent.Tpo -c gradescent.c -o gradescent.o >/dev/null 2>&1 --- viterbi.lo --- mv -f .deps/viterbi.Tpo .deps/viterbi.Plo --- discrime.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT discrime.lo -MD -MP -MF .deps/discrime.Tpo -c -o discrime.lo discrime.c --- kbest.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT kbest.lo -MD -MP -MF .deps/kbest.Tpo -c kbest.c -o kbest.o >/dev/null 2>&1 --- gradescent.lo --- mv -f .deps/gradescent.Tpo .deps/gradescent.Plo --- modelutil.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT modelutil.lo -MD -MP -MF .deps/modelutil.Tpo -c -o modelutil.lo modelutil.c --- model.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT model.lo -MD -MP -MF .deps/model.Tpo -c model.c -o model.o >/dev/null 2>&1 --- reestimate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT reestimate.lo -MD -MP -MF .deps/reestimate.Tpo -c reestimate.c -o reestimate.o >/dev/null 2>&1 --- discrime.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT discrime.lo -MD -MP -MF .deps/discrime.Tpo -c discrime.c -fPIC -DPIC -o .libs/discrime.o --- modelutil.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT modelutil.lo -MD -MP -MF .deps/modelutil.Tpo -c modelutil.c -fPIC -DPIC -o .libs/modelutil.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT modelutil.lo -MD -MP -MF .deps/modelutil.Tpo -c modelutil.c -o modelutil.o >/dev/null 2>&1 mv -f .deps/modelutil.Tpo .deps/modelutil.Plo --- cluster.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cluster.lo -MD -MP -MF .deps/cluster.Tpo -c -o cluster.lo cluster.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cluster.lo -MD -MP -MF .deps/cluster.Tpo -c cluster.c -fPIC -DPIC -o .libs/cluster.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cluster.lo -MD -MP -MF .deps/cluster.Tpo -c cluster.c -o cluster.o >/dev/null 2>&1 --- kbest.lo --- mv -f .deps/kbest.Tpo .deps/kbest.Plo --- root_finder.lo --- --- cluster.lo --- mv -f .deps/cluster.Tpo .deps/cluster.Plo --- smodel.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smodel.lo -MD -MP -MF .deps/smodel.Tpo -c -o smodel.lo smodel.c --- root_finder.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT root_finder.lo -MD -MP -MF .deps/root_finder.Tpo -c -o root_finder.lo root_finder.c --- model.lo --- mv -f .deps/model.Tpo .deps/model.Plo --- sfoba.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sfoba.lo -MD -MP -MF .deps/sfoba.Tpo -c -o sfoba.lo sfoba.c --- reestimate.lo --- mv -f .deps/reestimate.Tpo .deps/reestimate.Plo --- sviterbi.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sviterbi.lo -MD -MP -MF .deps/sviterbi.Tpo -c -o sviterbi.lo sviterbi.c --- root_finder.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT root_finder.lo -MD -MP -MF .deps/root_finder.Tpo -c root_finder.c -fPIC -DPIC -o .libs/root_finder.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT root_finder.lo -MD -MP -MF .deps/root_finder.Tpo -c root_finder.c -o root_finder.o >/dev/null 2>&1 --- sfoba.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sfoba.lo -MD -MP -MF .deps/sfoba.Tpo -c sfoba.c -fPIC -DPIC -o .libs/sfoba.o --- smodel.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smodel.lo -MD -MP -MF .deps/smodel.Tpo -c smodel.c -fPIC -DPIC -o .libs/smodel.o --- root_finder.lo --- mv -f .deps/root_finder.Tpo .deps/root_finder.Plo --- sviterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sviterbi.lo -MD -MP -MF .deps/sviterbi.Tpo -c sviterbi.c -fPIC -DPIC -o .libs/sviterbi.o --- sreestimate.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sreestimate.lo -MD -MP -MF .deps/sreestimate.Tpo -c -o sreestimate.lo sreestimate.c --- sviterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sviterbi.lo -MD -MP -MF .deps/sviterbi.Tpo -c sviterbi.c -o sviterbi.o >/dev/null 2>&1 --- sfoba.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sfoba.lo -MD -MP -MF .deps/sfoba.Tpo -c sfoba.c -o sfoba.o >/dev/null 2>&1 --- sreestimate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sreestimate.lo -MD -MP -MF .deps/sreestimate.Tpo -c sreestimate.c -fPIC -DPIC -o .libs/sreestimate.o --- sviterbi.lo --- mv -f .deps/sviterbi.Tpo .deps/sviterbi.Plo --- discrime.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT discrime.lo -MD -MP -MF .deps/discrime.Tpo -c discrime.c -o discrime.o >/dev/null 2>&1 --- scluster.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scluster.lo -MD -MP -MF .deps/scluster.Tpo -c -o scluster.lo scluster.c --- sfoba.lo --- mv -f .deps/sfoba.Tpo .deps/sfoba.Plo --- sgenerate.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sgenerate.lo -MD -MP -MF .deps/sgenerate.Tpo -c -o sgenerate.lo sgenerate.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sgenerate.lo -MD -MP -MF .deps/sgenerate.Tpo -c sgenerate.c -fPIC -DPIC -o .libs/sgenerate.o --- scluster.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scluster.lo -MD -MP -MF .deps/scluster.Tpo -c scluster.c -fPIC -DPIC -o .libs/scluster.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scluster.lo -MD -MP -MF .deps/scluster.Tpo -c scluster.c -o scluster.o >/dev/null 2>&1 mv -f .deps/scluster.Tpo .deps/scluster.Plo --- smixturehmm.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smixturehmm.lo -MD -MP -MF .deps/smixturehmm.Tpo -c -o smixturehmm.lo smixturehmm.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smixturehmm.lo -MD -MP -MF .deps/smixturehmm.Tpo -c smixturehmm.c -fPIC -DPIC -o .libs/smixturehmm.o --- smodel.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smodel.lo -MD -MP -MF .deps/smodel.Tpo -c smodel.c -o smodel.o >/dev/null 2>&1 --- sgenerate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sgenerate.lo -MD -MP -MF .deps/sgenerate.Tpo -c sgenerate.c -o sgenerate.o >/dev/null 2>&1 --- smixturehmm.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smixturehmm.lo -MD -MP -MF .deps/smixturehmm.Tpo -c smixturehmm.c -o smixturehmm.o >/dev/null 2>&1 --- sreestimate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sreestimate.lo -MD -MP -MF .deps/sreestimate.Tpo -c sreestimate.c -o sreestimate.o >/dev/null 2>&1 --- smixturehmm.lo --- mv -f .deps/smixturehmm.Tpo .deps/smixturehmm.Plo --- smap_classify.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smap_classify.lo -MD -MP -MF .deps/smap_classify.Tpo -c -o smap_classify.lo smap_classify.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smap_classify.lo -MD -MP -MF .deps/smap_classify.Tpo -c smap_classify.c -fPIC -DPIC -o .libs/smap_classify.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smap_classify.lo -MD -MP -MF .deps/smap_classify.Tpo -c smap_classify.c -o smap_classify.o >/dev/null 2>&1 mv -f .deps/smap_classify.Tpo .deps/smap_classify.Plo --- sdmodel.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdmodel.lo -MD -MP -MF .deps/sdmodel.Tpo -c -o sdmodel.lo sdmodel.c --- sgenerate.lo --- mv -f .deps/sgenerate.Tpo .deps/sgenerate.Plo --- sdfoba.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdfoba.lo -MD -MP -MF .deps/sdfoba.Tpo -c -o sdfoba.lo sdfoba.c --- sdmodel.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdmodel.lo -MD -MP -MF .deps/sdmodel.Tpo -c sdmodel.c -fPIC -DPIC -o .libs/sdmodel.o --- sdfoba.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdfoba.lo -MD -MP -MF .deps/sdfoba.Tpo -c sdfoba.c -fPIC -DPIC -o .libs/sdfoba.o --- discrime.lo --- mv -f .deps/discrime.Tpo .deps/discrime.Plo --- sdviterbi.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdviterbi.lo -MD -MP -MF .deps/sdviterbi.Tpo -c -o sdviterbi.lo sdviterbi.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdviterbi.lo -MD -MP -MF .deps/sdviterbi.Tpo -c sdviterbi.c -fPIC -DPIC -o .libs/sdviterbi.o --- sdfoba.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdfoba.lo -MD -MP -MF .deps/sdfoba.Tpo -c sdfoba.c -o sdfoba.o >/dev/null 2>&1 --- sreestimate.lo --- mv -f .deps/sreestimate.Tpo .deps/sreestimate.Plo --- pmodel.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pmodel.lo -MD -MP -MF .deps/pmodel.Tpo -c -o pmodel.lo pmodel.c --- sdmodel.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdmodel.lo -MD -MP -MF .deps/sdmodel.Tpo -c sdmodel.c -o sdmodel.o >/dev/null 2>&1 --- sdfoba.lo --- mv -f .deps/sdfoba.Tpo .deps/sdfoba.Plo --- pviterbi.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pviterbi.lo -MD -MP -MF .deps/pviterbi.Tpo -c -o pviterbi.lo pviterbi.c --- pmodel.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pmodel.lo -MD -MP -MF .deps/pmodel.Tpo -c pmodel.c -fPIC -DPIC -o .libs/pmodel.o --- pviterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pviterbi.lo -MD -MP -MF .deps/pviterbi.Tpo -c pviterbi.c -fPIC -DPIC -o .libs/pviterbi.o --- smodel.lo --- mv -f .deps/smodel.Tpo .deps/smodel.Plo --- pviterbi_propagate.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pviterbi_propagate.lo -MD -MP -MF .deps/pviterbi_propagate.Tpo -c -o pviterbi_propagate.lo pviterbi_propagate.c --- sdviterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdviterbi.lo -MD -MP -MF .deps/sdviterbi.Tpo -c sdviterbi.c -o sdviterbi.o >/dev/null 2>&1 --- pmodel.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pmodel.lo -MD -MP -MF .deps/pmodel.Tpo -c pmodel.c -o pmodel.o >/dev/null 2>&1 mv -f .deps/pmodel.Tpo .deps/pmodel.Plo --- fbgibbs.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT fbgibbs.lo -MD -MP -MF .deps/fbgibbs.Tpo -c -o fbgibbs.lo fbgibbs.c --- pviterbi_propagate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pviterbi_propagate.lo -MD -MP -MF .deps/pviterbi_propagate.Tpo -c pviterbi_propagate.c -fPIC -DPIC -o .libs/pviterbi_propagate.o --- fbgibbs.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT fbgibbs.lo -MD -MP -MF .deps/fbgibbs.Tpo -c fbgibbs.c -fPIC -DPIC -o .libs/fbgibbs.o --- sdviterbi.lo --- mv -f .deps/sdviterbi.Tpo .deps/sdviterbi.Plo --- cfbgibbs.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cfbgibbs.lo -MD -MP -MF .deps/cfbgibbs.Tpo -c -o cfbgibbs.lo cfbgibbs.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cfbgibbs.lo -MD -MP -MF .deps/cfbgibbs.Tpo -c cfbgibbs.c -fPIC -DPIC -o .libs/cfbgibbs.o --- pviterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pviterbi.lo -MD -MP -MF .deps/pviterbi.Tpo -c pviterbi.c -o pviterbi.o >/dev/null 2>&1 --- sdmodel.lo --- mv -f .deps/sdmodel.Tpo .deps/sdmodel.Plo --- fbgibbs.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT fbgibbs.lo -MD -MP -MF .deps/fbgibbs.Tpo -c fbgibbs.c -o fbgibbs.o >/dev/null 2>&1 mv -f .deps/fbgibbs.Tpo .deps/fbgibbs.Plo --- cfbgibbs.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cfbgibbs.lo -MD -MP -MF .deps/cfbgibbs.Tpo -c cfbgibbs.c -o cfbgibbs.o >/dev/null 2>&1 --- pviterbi_propagate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pviterbi_propagate.lo -MD -MP -MF .deps/pviterbi_propagate.Tpo -c pviterbi_propagate.c -o pviterbi_propagate.o >/dev/null 2>&1 --- pviterbi.lo --- mv -f .deps/pviterbi.Tpo .deps/pviterbi.Plo --- cfbgibbs.lo --- mv -f .deps/cfbgibbs.Tpo .deps/cfbgibbs.Plo --- pviterbi_propagate.lo --- mv -f .deps/pviterbi_propagate.Tpo .deps/pviterbi_propagate.Plo --- libghmm.la --- /bin/sh ../libtool --tag=CC --mode=link cc -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -version-info 1:0:0 -o libghmm.la -rpath /usr/local/lib rng.lo randvar.lo matrixop.lo gauss_tail.lo mes.lo ghmm_internals.lo mprintf.lo vector.lo matrix.lo scanner.lo linkedlist.lo sequence.lo psequence.lo xmlreader.lo xmlwriter.lo model.lo foba.lo viterbi.lo reestimate.lo gradescent.lo kbest.lo discrime.lo modelutil.lo cluster.lo root_finder.lo smodel.lo sfoba.lo sviterbi.lo sreestimate.lo scluster.lo sgenerate.lo smixturehmm.lo smap_classify.lo sdmodel.lo sdfoba.lo sdviterbi.lo pmodel.lo pviterbi.lo pviterbi_propagate.lo fbgibbs.lo cfbgibbs.lo -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 libtool: link: cc -shared -fPIC -DPIC .libs/rng.o .libs/randvar.o .libs/matrixop.o .libs/gauss_tail.o .libs/mes.o .libs/ghmm_internals.o .libs/mprintf.o .libs/vector.o .libs/matrix.o .libs/scanner.o .libs/linkedlist.o .libs/sequence.o .libs/psequence.o .libs/xmlreader.o .libs/xmlwriter.o .libs/model.o .libs/foba.o .libs/viterbi.o .libs/reestimate.o .libs/gradescent.o .libs/kbest.o .libs/discrime.o .libs/modelutil.o .libs/cluster.o .libs/root_finder.o .libs/smodel.o .libs/sfoba.o .libs/sviterbi.o .libs/sreestimate.o .libs/scluster.o .libs/sgenerate.o .libs/smixturehmm.o .libs/smap_classify.o .libs/sdmodel.o .libs/sdfoba.o .libs/sdviterbi.o .libs/pmodel.o .libs/pviterbi.o .libs/pviterbi_propagate.o .libs/fbgibbs.o .libs/cfbgibbs.o -lm -lpthread -L/usr/local/lib -lxml2 -O2 -Wl,-soname -Wl,libghmm.so.1 -o .libs/libghmm.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libghmm.so.1" && ln -s "libghmm.so.1.0.0" "libghmm.so.1") libtool: link: (cd ".libs" && rm -f "libghmm.so" && ln -s "libghmm.so.1.0.0" "libghmm.so") libtool: link: ar cru .libs/libghmm.a rng.o randvar.o matrixop.o gauss_tail.o mes.o ghmm_internals.o mprintf.o vector.o matrix.o scanner.o linkedlist.o sequence.o psequence.o xmlreader.o xmlwriter.o model.o foba.o viterbi.o reestimate.o gradescent.o kbest.o discrime.o modelutil.o cluster.o root_finder.o smodel.o sfoba.o sviterbi.o sreestimate.o scluster.o sgenerate.o smixturehmm.o smap_classify.o sdmodel.o sdfoba.o sdviterbi.o pmodel.o pviterbi.o pviterbi_propagate.o fbgibbs.o cfbgibbs.o libtool: link: ranlib .libs/libghmm.a libtool: link: ( cd ".libs" && rm -f "libghmm.la" && ln -s "../libghmm.la" "libghmm.la" ) Making all in tools --- all --- /usr/bin/make all-recursive --- all-recursive --- Making all in . --- probdist.o --- --- cluster.o --- --- scluster.o --- --- smix_hmm.o --- --- probdist.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT probdist.o -MD -MP -MF .deps/probdist.Tpo -c -o probdist.o probdist.c --- cluster.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cluster.o -MD -MP -MF .deps/cluster.Tpo -c -o cluster.o cluster.c --- smix_hmm.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smix_hmm.o -MD -MP -MF .deps/smix_hmm.Tpo -c -o smix_hmm.o smix_hmm.c --- scluster.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scluster.o -MD -MP -MF .deps/scluster.Tpo -c -o scluster.o scluster.c --- smix_hmm.o --- mv -f .deps/smix_hmm.Tpo .deps/smix_hmm.Po --- probdist.o --- mv -f .deps/probdist.Tpo .deps/probdist.Po --- smix_hmm --- --- probdist --- --- smix_hmm --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o smix_hmm smix_hmm.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- probdist --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o probdist probdist.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- scluster.o --- mv -f .deps/scluster.Tpo .deps/scluster.Po --- cluster.o --- mv -f .deps/cluster.Tpo .deps/cluster.Po --- cluster --- --- scluster --- --- cluster --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o cluster cluster.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- scluster --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o scluster scluster.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- smix_hmm --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o smix_hmm smix_hmm.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- scluster --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o scluster scluster.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- probdist --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o probdist probdist.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- cluster --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o cluster cluster.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 Making all in tests --- all-recursive --- Making all in data --- all-recursive --- Making all in . --- randvar_test.o --- --- root_finder_test.o --- --- coin_toss_test.o --- --- two_states_three_symbols.o --- --- libxml-test.o --- --- coin_toss_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT coin_toss_test.o -MD -MP -MF .deps/coin_toss_test.Tpo -c -o coin_toss_test.o coin_toss_test.c --- two_states_three_symbols.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT two_states_three_symbols.o -MD -MP -MF .deps/two_states_three_symbols.Tpo -c -o two_states_three_symbols.o two_states_three_symbols.c --- libxml-test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT libxml-test.o -MD -MP -MF .deps/libxml-test.Tpo -c -o libxml-test.o libxml-test.c --- randvar_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT randvar_test.o -MD -MP -MF .deps/randvar_test.Tpo -c -o randvar_test.o randvar_test.c --- root_finder_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT root_finder_test.o -MD -MP -MF .deps/root_finder_test.Tpo -c -o root_finder_test.o root_finder_test.c mv -f .deps/root_finder_test.Tpo .deps/root_finder_test.Po --- chmm.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT chmm.o -MD -MP -MF .deps/chmm.Tpo -c -o chmm.o chmm.c --- randvar_test.o --- mv -f .deps/randvar_test.Tpo .deps/randvar_test.Po --- libxml-test.o --- mv -f .deps/libxml-test.Tpo .deps/libxml-test.Po --- chmm_test.o --- --- shmm_viterbi_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT shmm_viterbi_test.o -MD -MP -MF .deps/shmm_viterbi_test.Tpo -c -o shmm_viterbi_test.o shmm_viterbi_test.c --- chmm_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT chmm_test.o -MD -MP -MF .deps/chmm_test.Tpo -c -o chmm_test.o chmm_test.c --- two_states_three_symbols.o --- mv -f .deps/two_states_three_symbols.Tpo .deps/two_states_three_symbols.Po --- shmm_viterbi_test.o --- mv -f .deps/shmm_viterbi_test.Tpo .deps/shmm_viterbi_test.Po --- test_gsl_ran_gaussian_tail.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT test_gsl_ran_gaussian_tail.o -MD -MP -MF .deps/test_gsl_ran_gaussian_tail.Tpo -c -o test_gsl_ran_gaussian_tail.o test_gsl_ran_gaussian_tail.c --- chmm.o --- mv -f .deps/chmm.Tpo .deps/chmm.Po --- sequences_test.o --- --- sequences_old_format.o --- --- sequences_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sequences_test.o -MD -MP -MF .deps/sequences_test.Tpo -c -o sequences_test.o sequences_test.c --- sequences_old_format.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sequences_old_format.o -MD -MP -MF .deps/sequences_old_format.Tpo -c -o sequences_old_format.o sequences_old_format.c --- test_gsl_ran_gaussian_tail.o --- mv -f .deps/test_gsl_ran_gaussian_tail.Tpo .deps/test_gsl_ran_gaussian_tail.Po --- label_higher_order_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT label_higher_order_test.o -MD -MP -MF .deps/label_higher_order_test.Tpo -c -o label_higher_order_test.o label_higher_order_test.c --- sequences_old_format.o --- mv -f .deps/sequences_old_format.Tpo .deps/sequences_old_format.Po --- read_fa.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT read_fa.o -MD -MP -MF .deps/read_fa.Tpo -c -o read_fa.o read_fa.c --- chmm_test.o --- mv -f .deps/chmm_test.Tpo .deps/chmm_test.Po --- mcmc.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mcmc.o -MD -MP -MF .deps/mcmc.Tpo -c -o mcmc.o mcmc.c --- sequences_test.o --- mv -f .deps/sequences_test.Tpo .deps/sequences_test.Po --- coin_toss_test.o --- mv -f .deps/coin_toss_test.Tpo .deps/coin_toss_test.Po --- root_finder_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o root_finder_test root_finder_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- randvar_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o randvar_test randvar_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- mcmc.o --- mcmc.c: In function 'main': mcmc.c:144:3: warning: implicit declaration of function 'init_priors' [-Wimplicit-function-declaration] init_priors(mo, &pA, &pB, &pPi); ^ mcmc.c:146:15: warning: implicit declaration of function 'ghmm_dmodel_cfbgibbs' [-Wimplicit-function-declaration] int * Q = ghmm_dmodel_cfbgibbs(mo, my_output, ^ mcmc.c:146:15: warning: initialization makes pointer from integer without a cast [-Wint-conversion] mcmc.c:148:107: warning: passing argument 4 of 'ghmm_dmodel_viterbi_logp' makes pointer from integer without a cast [-Wint-conversion] printf("viterbi prob mcmc%f \n", ghmm_dmodel_viterbi_logp(mo, my_output->seq[0], my_output->seq_len[0], Q[0])); ^ In file included from mcmc.c:13:0: ../ghmm/viterbi.h:75:10: note: expected 'int *' but argument is of type 'int' double ghmm_dmodel_viterbi_logp (ghmm_dmodel * mo, int *o, int len, int *state_seq); ^ mv -f .deps/mcmc.Tpo .deps/mcmc.Po --- libxml-test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o libxml-test libxml-test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- read_fa.o --- mv -f .deps/read_fa.Tpo .deps/read_fa.Po --- shmm_viterbi_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o shmm_viterbi_test shmm_viterbi_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- label_higher_order_test.o --- mv -f .deps/label_higher_order_test.Tpo .deps/label_higher_order_test.Po --- two_states_three_symbols --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o two_states_three_symbols two_states_three_symbols.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- root_finder_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o root_finder_test root_finder_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- randvar_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o randvar_test randvar_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- chmm --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o chmm chmm.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- test_gsl_ran_gaussian_tail --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o test_gsl_ran_gaussian_tail test_gsl_ran_gaussian_tail.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- libxml-test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o libxml-test libxml-test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- shmm_viterbi_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o shmm_viterbi_test shmm_viterbi_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- two_states_three_symbols --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o two_states_three_symbols two_states_three_symbols.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- sequences_old_format --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o sequences_old_format sequences_old_format.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- chmm_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o chmm_test chmm_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- coin_toss_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o coin_toss_test coin_toss_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- test_gsl_ran_gaussian_tail --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o test_gsl_ran_gaussian_tail test_gsl_ran_gaussian_tail.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- sequences_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o sequences_test sequences_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- sequences_old_format --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o sequences_old_format sequences_old_format.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- chmm_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o chmm_test chmm_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- mcmc --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o mcmc mcmc.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- coin_toss_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o coin_toss_test coin_toss_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- read_fa --- --- chmm --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o chmm chmm.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- sequences_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o sequences_test sequences_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- label_higher_order_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o label_higher_order_test label_higher_order_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- read_fa --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o read_fa read_fa.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- mcmc --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o mcmc mcmc.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- read_fa --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o read_fa read_fa.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- label_higher_order_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o label_higher_order_test label_higher_order_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 =========================================================================== =================================================== =========================================================================== =================================================== ===> Staging for ghmm-0.9.r3 ===> Generating temporary packing list if test -z 'strip'; then /usr/bin/make INSTALL_PROGRAM="/bin/sh /wrkdirs/science/ghmm/ghmm-0.9-rc3/install-sh -c -s" install_sh_PROGRAM="/bin/sh /wrkdirs/science/ghmm/ghmm-0.9-rc3/install-sh -c -s" INSTALL_STRIP_FLAG=-s install; else /usr/bin/make INSTALL_PROGRAM="/bin/sh /wrkdirs/science/ghmm/ghmm-0.9-rc3/install-sh -c -s" install_sh_PROGRAM="/bin/sh /wrkdirs/science/ghmm/ghmm-0.9-rc3/install-sh -c -s" INSTALL_STRIP_FLAG=-s "INSTALL_PROGRAM_ENV=STRIPPROG='strip'" install; fi Making install in ghmm Making install in . /bin/mkdir -p '/wrkdirs/science/ghmm/stage/usr/local/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c -s libghmm.la '/wrkdirs/science/ghmm/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libghmm.so.1.0.0 /wrkdirs/science/ghmm/stage/usr/local/lib/libghmm.so.1.0.0 libtool: install: strip --strip-unneeded /wrkdirs/science/ghmm/stage/usr/local/lib/libghmm.so.1.0.0 libtool: install: (cd /wrkdirs/science/ghmm/stage/usr/local/lib && { ln -s -f libghmm.so.1.0.0 libghmm.so.1 || { rm -f libghmm.so.1 && ln -s libghmm.so.1.0.0 libghmm.so.1; }; }) libtool: install: (cd /wrkdirs/science/ghmm/stage/usr/local/lib && { ln -s -f libghmm.so.1.0.0 libghmm.so || { rm -f libghmm.so && ln -s libghmm.so.1.0.0 libghmm.so; }; }) libtool: install: /usr/bin/install -c .libs/libghmm.lai /wrkdirs/science/ghmm/stage/usr/local/lib/libghmm.la libtool: install: /usr/bin/install -c .libs/libghmm.a /wrkdirs/science/ghmm/stage/usr/local/lib/libghmm.a libtool: install: strip --strip-debug /wrkdirs/science/ghmm/stage/usr/local/lib/libghmm.a libtool: install: chmod 644 /wrkdirs/science/ghmm/stage/usr/local/lib/libghmm.a libtool: install: ranlib /wrkdirs/science/ghmm/stage/usr/local/lib/libghmm.a libtool: warning: remember to run 'libtool --finish /usr/local/lib' /bin/mkdir -p '/wrkdirs/science/ghmm/stage/usr/local/include/ghmm' install -m 0644 ghmm.h ghmmconfig.h sequence.h psequence.h xmlreader.h xmlwriter.h model.h foba.h viterbi.h gradescent.h kbest.h discrime.h cluster.h scluster.h reestimate.h sfoba.h sviterbi.h smodel.h sdmodel.h sdfoba.h sreestimate.h sgenerate.h smixturehmm.h smap_classify.h pmodel.h pviterbi.h pviterbi_propagate.h rng.h scanner.h obsolete.h unsupported.h fbgibbs.h cfbgibbs.h '/wrkdirs/science/ghmm/stage/usr/local/include/ghmm' Making install in tools /usr/bin/make install-recursive Making install in . /bin/mkdir -p '/wrkdirs/science/ghmm/stage/usr/local/bin' STRIPPROG='strip' /bin/sh ../libtool --mode=install /bin/sh /wrkdirs/science/ghmm/ghmm-0.9-rc3/install-sh -c -s probdist cluster scluster smix_hmm '/wrkdirs/science/ghmm/stage/usr/local/bin' libtool: install: /bin/sh /wrkdirs/science/ghmm/ghmm-0.9-rc3/install-sh -c -s probdist /wrkdirs/science/ghmm/stage/usr/local/bin/probdist libtool: install: /bin/sh /wrkdirs/science/ghmm/ghmm-0.9-rc3/install-sh -c -s cluster /wrkdirs/science/ghmm/stage/usr/local/bin/cluster libtool: install: /bin/sh /wrkdirs/science/ghmm/ghmm-0.9-rc3/install-sh -c -s scluster /wrkdirs/science/ghmm/stage/usr/local/bin/scluster libtool: install: /bin/sh /wrkdirs/science/ghmm/ghmm-0.9-rc3/install-sh -c -s smix_hmm /wrkdirs/science/ghmm/stage/usr/local/bin/smix_hmm /bin/mkdir -p '/wrkdirs/science/ghmm/stage/usr/local/bin' install -m 555 ghmm-config '/wrkdirs/science/ghmm/stage/usr/local/bin' Making install in tests Making install in data Making install in . /bin/mkdir -p '/wrkdirs/science/ghmm/stage/usr/local/share/ghmm' install -m 0644 doc/ghmm.dtd.1.0 '/wrkdirs/science/ghmm/stage/usr/local/share/ghmm' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for ghmm-0.9.r3 file sizes/checksums [46]: . done packing files [46]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for ghmm-0.9.r3 build of science/ghmm ended at Wed Oct 5 19:48:11 PDT 2016 build time: 00:00:41