=> Building biology/fasta3 build started at Tue Oct 4 22:00:55 PDT 2016 port directory: /usr/ports/biology/fasta3 building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: wendell@bsd.com.br ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../05//usr/ports/biology/fasta3/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=fasta3-36.3.8 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for fasta3-36.3.8: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/biology/fasta3 XDG_CONFIG_HOME=/wrkdirs/biology/fasta3 HOME=/wrkdirs/biology/fasta3 TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- THR_LIBS="-pthread" XDIR="/wrkdirs/biology/fasta3/stage/usr/local/bin" FASTA_HOST="$(/usr/bin/uname -n)" XDG_DATA_HOME=/wrkdirs/biology/fasta3 XDG_CONFIG_HOME=/wrkdirs/biology/fasta3 HOME=/wrkdirs/biology/fasta3 TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- VER="36" OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/fasta3" EXAMPLESDIR="share/examples/fasta3" DATADIR="share/fasta3" WWWDIR="www/fasta3" ETCDIR="etc/fasta3" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/fasta3 DOCSDIR=/usr/local/share/doc/fasta3 EXAMPLESDIR=/usr/local/share/examples/fasta3 WWWDIR=/usr/local/www/fasta3 ETCDIR=/usr/local/etc/fasta3 --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License Fasta accepted by the user =========================================================================== =================================================== ===> fasta3-36.3.8 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> fasta3-36.3.8 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of fasta3-36.3.8 =========================================================================== =================================================== =========================================================================== =================================================== ===> License Fasta accepted by the user ===> Fetching all distfiles required by fasta3-36.3.8 for building =========================================================================== =================================================== ===> License Fasta accepted by the user ===> Fetching all distfiles required by fasta3-36.3.8 for building => SHA256 Checksum OK for fasta3/2014-01-29/fasta-36.3.8.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License Fasta accepted by the user ===> Fetching all distfiles required by fasta3-36.3.8 for building ===> Extracting for fasta3-36.3.8 => SHA256 Checksum OK for fasta3/2014-01-29/fasta-36.3.8.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for fasta3-36.3.8 ===> Applying ports patches for fasta3-36.3.8 =========================================================================== =================================================== =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for fasta3-36.3.8 =========================================================================== =================================================== ===> Building for fasta3-36.3.8 --- init_sw.o --- --- lwm_align.o --- --- calcons_sw.o --- --- comp_mlib9.o --- --- compacc2_s.o --- --- init_sw.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DSSEARCH initfa.c -o init_sw.o --- lwm_align.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c wm_align.c -o lwm_align.o --- calcons_sw.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DSSEARCH -c cal_cons2.c -o calcons_sw.o --- comp_mlib9.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DCOMP_MLIB -c comp_lib9.c -o comp_mlib9.o --- compacc2_s.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DCOMP_MLIB -c compacc2e.c -o compacc2_s.o --- calcons_sw.o --- cal_cons2.c: In function 'init_update_data': cal_cons2.c:894:1: warning: type of 'show_code' defaults to 'int' [-Wimplicit-int] init_update_data(show_code) { ^ --- lshowalign.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DLALIGN -c mshowalign2.c -o lshowalign.o --- init_lal.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DLALIGN initfa.c -o init_lal.o --- droplal2.o --- cc -DLALIGN -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropgsw2.c -o droplal2.o --- calcons_la.o --- cc -DLALIGN -DLCAL_CONS -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c cal_cons2.c -o calcons_la.o cal_cons2.c: In function 'init_update_data': cal_cons2.c:894:1: warning: type of 'show_code' defaults to 'int' [-Wimplicit-int] init_update_data(show_code) { ^ --- init_fs.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTS initfa.c -o init_fs.o --- init_fx.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTX initfa.c -o init_fx.o --- init_tfx.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTX -DTFAST initfa.c -o init_tfx.o --- drop_tfx.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DTFAST dropfx2.c -o drop_tfx.o dropfx2.c: In function 'init_update_data': dropfx2.c:3613:1: warning: type of 'show_code' defaults to 'int' [-Wimplicit-int] init_update_data(show_code) { ^ --- init_fy.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTY initfa.c -o init_fy.o --- init_tfy.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTY -DTFAST initfa.c -o init_tfy.o --- drop_tfz.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DTFAST dropfz3.c -o drop_tfz.o dropfz3.c: In function 'init_update_data': dropfz3.c:3587:1: warning: type of 'show_code' defaults to 'int' [-Wimplicit-int] init_update_data(show_code) { ^ --- init_tfs.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTS -DTFAST initfa.c -o init_tfs.o --- drop_tfs.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DTFAST -DFASTS dropfs2.c -o drop_tfs.o --- calcons_tfs.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DTFAST -DFASTS -c cal_consf.c -o calcons_tfs.o --- init_fm.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTM initfa.c -o init_fm.o --- tatstats_fm.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTM tatstats.c -o tatstats_fm.o --- drop_fm.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTM dropfs2.c -o drop_fm.o --- calcons_fm.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DFASTM -c cal_consf.c -o calcons_fm.o --- mshowalign2_s.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c mshowalign2.c -o mshowalign2_s.o --- init_tfm.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTM -DTFAST initfa.c -o init_tfm.o --- drop_tfm.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DTFAST -DFASTM dropfs2.c -o drop_tfm.o --- calcons_tfm.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DTFAST -DFASTM -c cal_consf.c -o calcons_tfm.o --- init_ff.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTF initfa.c -o init_ff.o --- scaleswtf.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DFASTF -c scaleswt.c -o scaleswtf.o --- tatstats_ff.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTF tatstats.c -o tatstats_ff.o --- calcons_ff.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DFASTF -c cal_consf.c -o calcons_ff.o --- init_tf.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTF -DTFAST initfa.c -o init_tf.o --- drop_tff.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTF -DTFAST dropff2.c -o drop_tff.o --- calcons_tff.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DTFAST -DFASTF -c cal_consf.c -o calcons_tff.o --- scale_sn.o --- cc -DNORMAL_DIST -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c scaleswn.c -o scale_sn.o --- init_lnw.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DGLSEARCH initfa.c -o init_lnw.o --- gwm_align.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DGGSEARCH -c wm_align.c -o gwm_align.o --- init_gnw.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DGGSEARCH initfa.c -o init_gnw.o --- dropgnw.o --- cc -DGLOBAL_GLOBAL -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropnnw2.c -o dropgnw.o --- comp_mthr9.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DCOMP_THR -DCOMP_MLIB -c comp_lib9.c -o comp_mthr9.o --- work_thr2.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c work_thr2.c --- pthr_subs2.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c pthr_subs2.c --- compacc2_t.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DCOMP_THR -DCOMP_MLIB -c compacc2e.c -o compacc2_t.o --- showbest.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c mshowbest.c -o showbest.o --- build_ares.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c build_ares.c -o build_ares.o --- re_getlib.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c re_getlib.c --- mshowalign2_t.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DCOMP_THR -c mshowalign2.c -o mshowalign2_t.o --- htime.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c htime.c --- apam.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c apam.c --- doinit.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c doinit.c --- init_fa.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTA initfa.c -o init_fa.o --- scale_se.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DLOCAL_SCORE -c scaleswn.c -o scale_se.o --- karlin.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c karlin.c --- drop_nfa.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropnfa.c -o drop_nfa.o --- wm_align.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c wm_align.c --- calcons_fa.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DFASTA -c cal_cons2.c -o calcons_fa.o --- lgetlib.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c nmgetlib.c -o lgetlib.o --- calcons_fa.o --- cal_cons2.c: In function 'init_update_data': cal_cons2.c:894:1: warning: type of 'show_code' defaults to 'int' [-Wimplicit-int] init_update_data(show_code) { ^ --- lgetaa_m.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c mmgetaa.c -o lgetaa_m.o --- c_dispn.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c c_dispn.c --- ncbl2_mlib.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c ncbl2_mlib.c -o ncbl2_mlib.o --- lib_sel.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c lib_sel.c --- url_subs.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c url_subs.c --- mrandom.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c mrandom.c --- dropgsw2.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropgsw2.c -o dropgsw2.o --- pssm_asn_subs.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c pssm_asn_subs.c --- last_thresh.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c last_thresh.c --- lsim4.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c lsim4.c --- scaleswts.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c scaleswt.c -o scaleswts.o --- last_tat.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c last_tat.c --- tatstats_fs.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTS tatstats.c -o tatstats_fs.o --- drop_fs2.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DFASTS -c dropfs2.c -o drop_fs2.o --- calcons_fs.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -DFASTS -c cal_consf.c -o calcons_fs.o --- faatran.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c faatran.c --- drop_fx.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropfx2.c -o drop_fx.o dropfx2.c: In function 'init_update_data': dropfx2.c:3613:1: warning: type of 'show_code' defaults to 'int' [-Wimplicit-int] init_update_data(show_code) { ^ --- drop_fz.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropfz3.c -o drop_fz.o --- drop_ff2.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c -DFASTF dropff2.c -o drop_ff2.o --- drop_fz.o --- dropfz3.c: In function 'init_update_data': dropfz3.c:3587:1: warning: type of 'show_code' defaults to 'int' [-Wimplicit-int] init_update_data(show_code) { ^ --- droplnw.o --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -c dropnnw2.c -o droplnw.o --- map_db --- cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -o ../bin/map_db map_db.c --- ssearch36 --- cc -o ../bin/ssearch36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_sw.o dropgsw2.o lwm_align.o calcons_sw.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- ggsearch36 --- cc -o ../bin/ggsearch36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_gnw.o dropgnw.o gwm_align.o calcons_sw.o scale_sn.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- fasta36 --- cc -o ../bin/fasta36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fa.o drop_nfa.o wm_align.o calcons_fa.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- tfastf36 --- cc -o ../bin/tfastf36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tf.o drop_tff.o calcons_tff.o scaleswtf.o last_tat.o tatstats_ff.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -pthread --- tfastx36 --- cc -o ../bin/tfastx36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfx.o drop_tfx.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o url_subs.o mrandom.o -lm -lz -pthread --- tfastf36 --- compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- tfasty36 --- cc -o ../bin/tfasty36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfy.o drop_tfz.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o url_subs.o mrandom.o -lm -lz -pthread --- tfastx36 --- compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- fastm36 --- cc -o ../bin/fastm36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fm.o drop_fm.o calcons_fm.o scaleswts.o last_tat.o tatstats_fm.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -pthread --- tfasts36 --- cc -o ../bin/tfasts36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfs.o drop_tfs.o calcons_tfs.o scaleswts.o last_tat.o tatstats_fs.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -pthread --- tfasty36 --- compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- tfastm36 --- cc -o ../bin/tfastm36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_s.o htime.o apam.o doinit.o init_tfm.o drop_tfm.o calcons_tfm.o scaleswts.o tatstats_fm.o last_tat.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -pthread --- tfasts36 --- compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- fastf36 --- cc -o ../bin/fastf36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_ff.o drop_ff2.o calcons_ff.o scaleswtf.o last_tat.o tatstats_ff.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -pthread --- tfastm36 --- compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- fastm36 --- compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- glsearch36 --- --- fasts36 --- --- glsearch36 --- cc -o ../bin/glsearch36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_lnw.o droplnw.o gwm_align.o calcons_sw.o scale_sn.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz -pthread --- fasts36 --- cc -o ../bin/fasts36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fs.o drop_fs2.o calcons_fs.o scaleswts.o last_tat.o tatstats_fs.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- fastf36 --- compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- lalign36 --- cc -o ../bin/lalign36 comp_mlib9.o compacc2_s.o showbest.o build_ares.o re_getlib.o lshowalign.o htime.o apam.o doinit.o init_lal.o droplal2.o lsim4.o calcons_la.o scale_se.o karlin.o last_thresh.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz compacc2_s.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- glsearch36 --- compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- fastx36 --- cc -o ../bin/fastx36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fx.o drop_fx.o faatran.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() --- fasty36 --- cc -o ../bin/fasty36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fy.o drop_fz.o faatran.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() =========================================================================== =================================================== =========================================================================== =================================================== ===> Staging for fasta3-36.3.8 ===> Generating temporary packing list cc -o ../bin/fasta36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fa.o drop_nfa.o wm_align.o calcons_fa.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/ssearch36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_sw.o dropgsw2.o lwm_align.o calcons_sw.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/lalign36 comp_mlib9.o compacc2_s.o showbest.o build_ares.o re_getlib.o lshowalign.o htime.o apam.o doinit.o init_lal.o droplal2.o lsim4.o calcons_la.o scale_se.o karlin.o last_thresh.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz compacc2_s.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/fasts36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fs.o drop_fs2.o calcons_fs.o scaleswts.o last_tat.o tatstats_fs.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/fastx36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fx.o drop_fx.o faatran.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/tfastx36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfx.o drop_tfx.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/fasty36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fy.o drop_fz.o faatran.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/tfasty36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfy.o drop_tfz.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o url_subs.o mrandom.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/tfasts36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfs.o drop_tfs.o calcons_tfs.o scaleswts.o last_tat.o tatstats_fs.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/fastm36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fm.o drop_fm.o calcons_fm.o scaleswts.o last_tat.o tatstats_fm.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/tfastm36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_s.o htime.o apam.o doinit.o init_tfm.o drop_tfm.o calcons_tfm.o scaleswts.o tatstats_fm.o last_tat.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/fastf36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_ff.o drop_ff2.o calcons_ff.o scaleswtf.o last_tat.o tatstats_ff.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/tfastf36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tf.o drop_tff.o calcons_tff.o scaleswtf.o last_tat.o tatstats_ff.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/glsearch36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_lnw.o droplnw.o gwm_align.o calcons_sw.o scale_sn.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -o ../bin/ggsearch36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_gnw.o dropgnw.o gwm_align.o calcons_sw.o scale_sn.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz -pthread compacc2_t.o:compacc2e.c:function build_lib_db: warning: warning: mktemp() possibly used unsafely; consider using mkstemp() cc -pipe -O2 -fno-strict-aliasing -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DSFCHAR="':'" -DFASTA_HOST='pkgbox64.dragonflybsd.org' -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC -o ../bin/map_db map_db.c cd ../bin; cp fasta36 ssearch36 lalign36 fasts36 fastx36 tfastx36 fasty36 tfasty36 tfasts36 fastm36 tfastm36 fastf36 tfastf36 glsearch36 ggsearch36 map_db /wrkdirs/biology/fasta3/stage/usr/local/bin; cd ../src (cd /wrkdirs/biology/fasta3/fasta-36.3.8/bin && install -s -m 555 * /wrkdirs/biology/fasta3/stage/usr/local/bin) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/conf && install -m 0644 fastlibs /wrkdirs/biology/fasta3/stage/usr/local/etc/fastlibs.sample) (cd /wrkdirs/biology/fasta3/fasta-36.3.8 && install -m 0644 data/*.mat /wrkdirs/biology/fasta3/stage/usr/local/share/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/doc && install -m 444 fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/doc && install -m 444 fastf3.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/doc && install -m 444 fasts3.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/doc && install -m 444 prss3.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/doc && install -m 444 map_db.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/doc && install -m 444 ps_lav.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/fastf35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/fasts35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/fastm35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/fastx35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/fasty35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/ggsearch35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/lalign35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/ssearch35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/tfasta35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/tfastf35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/tfasts35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/tfastx35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/tfasty35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/prfx35.1) (ln -sf fasta36.1 /wrkdirs/biology/fasta3/stage/usr/local/man/man1/prss35.1) (cd /wrkdirs/biology/fasta3/fasta-36.3.8 && install -m 0644 COPYRIGHT /wrkdirs/biology/fasta3/stage/usr/local/share/doc/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8 && install -m 0644 FASTA_LIST /wrkdirs/biology/fasta3/stage/usr/local/share/doc/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8 && install -m 0644 README /wrkdirs/biology/fasta3/stage/usr/local/share/doc/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/doc && install -m 0644 README.versions /wrkdirs/biology/fasta3/stage/usr/local/share/doc/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/doc && install -m 0644 fasta_func.doc /wrkdirs/biology/fasta3/stage/usr/local/share/doc/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/doc && install -m 0644 readme.* /wrkdirs/biology/fasta3/stage/usr/local/share/doc/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/doc && install -m 0644 fasta.defaults /wrkdirs/biology/fasta3/stage/usr/local/share/doc/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/doc && install -m 0644 fasta.options /wrkdirs/biology/fasta3/stage/usr/local/share/doc/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/doc && install -m 0644 fasta_versions.html /wrkdirs/biology/fasta3/stage/usr/local/share/doc/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8/doc && install -m 0644 changes*.html /wrkdirs/biology/fasta3/stage/usr/local/share/doc/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8 && install -m 0644 seq/*.aa /wrkdirs/biology/fasta3/stage/usr/local/share/examples/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8 && install -m 0644 seq/*.lc /wrkdirs/biology/fasta3/stage/usr/local/share/examples/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8 && install -m 0644 seq/*.seq /wrkdirs/biology/fasta3/stage/usr/local/share/examples/fasta3) (cd /wrkdirs/biology/fasta3/fasta-36.3.8 && install -m 0644 seq/*.lib /wrkdirs/biology/fasta3/stage/usr/local/share/examples/fasta3) ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for fasta3-36.3.8 file sizes/checksums [128]: .. done packing files [128]: .. done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for fasta3-36.3.8 build of biology/fasta3 ended at Tue Oct 4 22:01:31 PDT 2016 build time: 00:00:36