=> Building science/avogadro build started at Mon Oct 3 20:29:41 PDT 2016 port directory: /usr/ports/science/avogadro building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: ports@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../07//usr/ports/science/avogadro/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=avogadro-1.1.1_3 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for avogadro-1.1.1_3: PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --with-qt-includes=/usr/local/include/qt4 --with-qt-libraries=/usr/local/lib/qt4 --with-extra-includes=/usr/local/include --with-extra-libs=/usr/local/lib --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/science/avogadro XDG_CONFIG_HOME=/wrkdirs/science/avogadro HOME=/wrkdirs/science/avogadro TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 QTDIR="/usr/local" QMAKE="/usr/local/bin/qmake-qt4" MOC="/usr/local/bin/moc-qt4" RCC="/usr/local/bin/rcc" UIC="/usr/local/bin/uic-qt4" QMAKESPEC="/usr/local/share/qt4/mkspecs/freebsd-g++" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/science/avogadro XDG_CONFIG_HOME=/wrkdirs/science/avogadro HOME=/wrkdirs/science/avogadro TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib" LIBS="" CXX="c++" CXXFLAGS=" -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON="" NO_PYTHON="@comment " QT_PREFIX="/usr/local" QT_BINDIR="bin" QT_INCDIR="include/qt4" QT_LIBDIR="lib/qt4" QT_ARCHDIR="lib/qt4/qt4" QT_PLUGINDIR="lib/qt4/plugins" QT_LIBEXECDIR="libexec/qt4" QT_IMPORTDIR="lib/qt4/imports" QT_QMLDIR="lib/qt4/qt4/qml" QT_DATADIR="share/qt4" QT_DOCDIR="share/doc/qt4" QT_L10NDIR="share/qt4/translations" QT_ETCDIR="etc/xdg" QT_EXAMPLEDIR="share/examples/qt4" QT_TESTDIR="share/qt4/tests" QT_MKSPECDIR="share/qt4/mkspecs" CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly4 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/avogadro" EXAMPLESDIR="share/examples/avogadro" DATADIR="share/avogadro" WWWDIR="www/avogadro" ETCDIR="etc/avogadro" --End PLIST_SUB-- --SUB_LIST-- PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/avogadro DOCSDIR=/usr/local/share/doc/avogadro EXAMPLESDIR=/usr/local/share/examples/avogadro WWWDIR=/usr/local/www/avogadro ETCDIR=/usr/local/etc/avogadro --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> NOTICE: The avogadro port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2+ accepted by the user =========================================================================== =================================================== ===> avogadro-1.1.1_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> avogadro-1.1.1_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of avogadro-1.1.1_3 =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The avogadro port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by avogadro-1.1.1_3 for building =========================================================================== =================================================== ===> NOTICE: The avogadro port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by avogadro-1.1.1_3 for building => SHA256 Checksum OK for avogadro-1.1.1.tar.bz2. =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The avogadro port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by avogadro-1.1.1_3 for building ===> Extracting for avogadro-1.1.1_3 => SHA256 Checksum OK for avogadro-1.1.1.tar.bz2. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for avogadro-1.1.1_3 ===> Applying ports patches for avogadro-1.1.1_3 =========================================================================== =================================================== ===> avogadro-1.1.1_3 depends on package: eigen2>2 - not found ===> Installing existing package /packages/All/eigen2-2.0.17,1.txz Installing eigen2-2.0.17,1... Extracting eigen2-2.0.17,1: .......... done ===> avogadro-1.1.1_3 depends on package: eigen2>2 - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - not found ===> Installing existing package /packages/All/py27-numpy-1.11.1,1.txz Installing py27-numpy-1.11.1,1... `-- Installing python27-2.7.12... | `-- Installing expat-2.2.0... | `-- Extracting expat-2.2.0: .......... done | `-- Installing readline-6.3.8... | | `-- Installing indexinfo-0.2.5... | | `-- Extracting indexinfo-0.2.5: .... done | | `-- Installing ncurses-6.0_5... | | `-- Extracting ncurses-6.0_5: .......... done | `-- Extracting readline-6.3.8: .......... done | `-- Installing libffi-3.2.1... | `-- Extracting libffi-3.2.1: .......... done | `-- Installing libressl-2.4.3... | `-- Extracting libressl-2.4.3: .......... done | `-- Installing gettext-runtime-0.19.8.1... | `-- Extracting gettext-runtime-0.19.8.1: .......... done `-- Extracting python27-2.7.12: .......... done `-- Installing py27-setuptools27-23.1.0... `-- Extracting py27-setuptools27-23.1.0: .......... done `-- Installing lapack-3.5.0... | `-- Installing blas-3.5.0_3... | | `-- Installing gcc5-5.4.0... | | `-- Installing mpc-1.0.3... | | | `-- Installing gmp-5.1.3_3... | | | `-- Extracting gmp-5.1.3_3: .......... done | | | `-- Installing mpfr-3.1.5... | | | `-- Extracting mpfr-3.1.5: .......... done | | `-- Extracting mpc-1.0.3: ...... done | | `-- Installing binutils-2.27_4,1... | | `-- Extracting binutils-2.27_4,1: .......... done | | `-- Extracting gcc5-5.4.0: .......... done | `-- Extracting blas-3.5.0_3: ....... done `-- Extracting lapack-3.5.0: .......... done `-- Installing openblas-0.2.18_1,1... `-- Extracting openblas-0.2.18_1,1: ......... done `-- Installing suitesparse-4.0.2_4... `-- Extracting suitesparse-4.0.2_4: .......... done `-- Installing cblas-1.0_4... `-- Extracting cblas-1.0_4: ......... done Extracting py27-numpy-1.11.1,1: .......... done Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from gcc5-5.4.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_4: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> avogadro-1.1.1_3 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on package: py27-sip>0 - not found ===> Installing existing package /packages/All/py27-sip-4.17,1.txz Installing py27-sip-4.17,1... Extracting py27-sip-4.17,1: .......... done ===> avogadro-1.1.1_3 depends on package: py27-sip>0 - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.6.2.txz Installing cmake-3.6.2... `-- Installing cmake-modules-3.6.2... `-- Extracting cmake-modules-3.6.2: .......... done `-- Installing curl-7.50.3... | `-- Installing ca_root_nss-3.27... | `-- Extracting ca_root_nss-3.27: ....... done | `-- Installing krb5-1.14.4... | | `-- Installing pkgconf-1.0.1... | | `-- Extracting pkgconf-1.0.1: .......... done | `-- Extracting krb5-1.14.4: .......... done `-- Extracting curl-7.50.3: .......... done `-- Installing libarchive-3.2.1,1... | `-- Installing liblz4-131... | `-- Extracting liblz4-131: .......... done | `-- Installing lzo2-2.09... | `-- Extracting lzo2-2.09: .......... done `-- Extracting libarchive-3.2.1,1: .......... done `-- Installing jsoncpp-1.7.3... `-- Extracting jsoncpp-1.7.3: .......... done Extracting cmake-3.6.2: .......... done Message from ca_root_nss-3.27: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> avogadro-1.1.1_3 depends on file: /usr/local/bin/cmake - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on executable: update-desktop-database - not found ===> Installing existing package /packages/All/desktop-file-utils-0.22_3.txz Installing desktop-file-utils-0.22_3... `-- Installing glib-2.46.2_3... | `-- Installing libiconv-1.14_9... | `-- Extracting libiconv-1.14_9: .......... done | `-- Installing pcre-8.39... | `-- Extracting pcre-8.39: .......... done | `-- Installing perl5-5.20.3_15... | `-- Extracting perl5-5.20.3_15: .......... done `-- Extracting glib-2.46.2_3: .......... done No schema files found: doing nothing. Extracting desktop-file-utils-0.22_3: .......... done Message from perl5-5.20.3_15: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> avogadro-1.1.1_3 depends on executable: update-desktop-database - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on package: pkgconf>=0.9.10 - found ===> avogadro-1.1.1_3 depends on file: /usr/local/bin/python2.7 - found ===> avogadro-1.1.1_3 depends on executable: python2 - not found ===> Installing existing package /packages/All/python2-2_3.txz Installing python2-2_3... Extracting python2-2_3: ...... done ===> avogadro-1.1.1_3 depends on executable: python2 - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on package: libGL>0 - not found ===> Installing existing package /packages/All/libGL-11.2.2.txz Installing libGL-11.2.2... `-- Installing dri2proto-2.8... `-- Extracting dri2proto-2.8: .... done `-- Installing libXdamage-1.1.4_3... | `-- Installing libXfixes-5.0.1_3... | | `-- Installing xproto-7.0.28... | | `-- Extracting xproto-7.0.28: .......... done | | `-- Installing fixesproto-5.0... | | `-- Extracting fixesproto-5.0: .... done | | `-- Installing libX11-1.6.3,1... | | `-- Installing kbproto-1.0.7... | | `-- Extracting kbproto-1.0.7: .......... done | | `-- Installing libXdmcp-1.1.2... | | `-- Extracting libXdmcp-1.1.2: ......... done | | `-- Installing libxcb-1.11.1... | | | `-- Installing libxml2-2.9.4... | | | `-- Extracting libxml2-2.9.4: .......... done | | | `-- Installing libpthread-stubs-0.3_6... | | | `-- Extracting libpthread-stubs-0.3_6: ..... done | | | `-- Installing libXau-1.0.8_3... | | | `-- Extracting libXau-1.0.8_3: .......... done | | `-- Extracting libxcb-1.11.1: .......... done | | `-- Extracting libX11-1.6.3,1: .......... done | `-- Extracting libXfixes-5.0.1_3: .......... done | `-- Installing damageproto-1.2.1... | `-- Extracting damageproto-1.2.1: .... done `-- Extracting libXdamage-1.1.4_3: ...... done `-- Installing libdevq-0.0.2_1... `-- Extracting libdevq-0.0.2_1: ....... done `-- Installing libXxf86vm-1.1.4_1... | `-- Installing xf86vidmodeproto-2.3.1... | `-- Extracting xf86vidmodeproto-2.3.1: .... done | `-- Installing libXext-1.3.3_1,1... | | `-- Installing xextproto-7.3.0... | | `-- Extracting xextproto-7.3.0: .......... done | `-- Extracting libXext-1.3.3_1,1: .......... done `-- Extracting libXxf86vm-1.1.4_1: .......... done `-- Installing libdrm-2.4.66,1... | `-- Installing libpciaccess-0.13.4... | | `-- Installing pciids-20160621... | | `-- Extracting pciids-20160621: ..... done | `-- Extracting libpciaccess-0.13.4: ...... done `-- Extracting libdrm-2.4.66,1: .......... done `-- Installing libelf-0.8.13_1... `-- Extracting libelf-0.8.13_1: .......... done `-- Installing libxshmfence-1.2... `-- Extracting libxshmfence-1.2: ......... done `-- Installing libglapi-11.2.2... | `-- Installing libXvMC-1.0.9... | | `-- Installing libXv-1.0.10_3,1... | | `-- Installing videoproto-2.3.2... | | `-- Extracting videoproto-2.3.2: ...... done | | `-- Extracting libXv-1.0.10_3,1: .......... done | `-- Extracting libXvMC-1.0.9: .......... done `-- Extracting libglapi-11.2.2: ... done Extracting libGL-11.2.2: .......... done ===> avogadro-1.1.1_3 depends on package: libGL>0 - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on file: /usr/local/libdata/pkgconfig/glproto.pc - not found ===> Installing existing package /packages/All/glproto-1.4.17.txz Installing glproto-1.4.17... Extracting glproto-1.4.17: ...... done ===> avogadro-1.1.1_3 depends on file: /usr/local/libdata/pkgconfig/glproto.pc - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on file: /usr/local/libdata/pkgconfig/dri2proto.pc - found ===> avogadro-1.1.1_3 depends on file: /usr/local/libdata/pkgconfig/glproto.pc - found ===> avogadro-1.1.1_3 depends on file: /usr/local/libdata/pkgconfig/dri2proto.pc - found ===> avogadro-1.1.1_3 depends on file: /usr/local/lib/qt4/libQtGui.so - not found ===> Installing existing package /packages/All/qt4-gui-4.8.7_1.txz Installing qt4-gui-4.8.7_1... `-- Installing encodings-1.0.4_3,1... | `-- Installing font-util-1.3.1... | `-- Extracting font-util-1.3.1: .......... done `-- Extracting encodings-1.0.4_3,1: .......... done `-- Installing libXt-1.1.5,1... | `-- Installing libSM-1.2.2_3,1... | | `-- Installing libICE-1.0.9_1,1... | | `-- Extracting libICE-1.0.9_1,1: .......... done | `-- Extracting libSM-1.2.2_3,1: .......... done `-- Extracting libXt-1.1.5,1: .......... done `-- Installing xdg-utils-1.1.1... | `-- Installing hicolor-icon-theme-0.15... | `-- Extracting hicolor-icon-theme-0.15: . done | `-- Installing xset-1.2.3_1... | | `-- Installing libXfontcache-1.0.5_3... | | `-- Installing fontcacheproto-0.1.3... | | `-- Extracting fontcacheproto-0.1.3: .... done | | `-- Extracting libXfontcache-1.0.5_3: .......... done | | `-- Installing libXmu-1.1.2_3,1... | | `-- Extracting libXmu-1.1.2_3,1: .......... done | `-- Extracting xset-1.2.3_1: .. done | `-- Installing xprop-1.2.2... | `-- Extracting xprop-1.2.2: .. done `-- Extracting xdg-utils-1.1.1: .......... done `-- Installing libXinerama-1.1.3_3,1... | `-- Installing xineramaproto-1.2.1... | `-- Extracting xineramaproto-1.2.1: .. done `-- Extracting libXinerama-1.1.3_3,1: .......... done `-- Installing libXcursor-1.1.14_3... | `-- Installing libXrender-0.9.9... | | `-- Installing renderproto-0.11.1... | | `-- Extracting renderproto-0.11.1: .... done | `-- Extracting libXrender-0.9.9: .......... done `-- Extracting libXcursor-1.1.14_3: .......... done `-- Installing qt4-corelib-4.8.7_5... | `-- Installing icu-57.1,1... | `-- Extracting icu-57.1,1: .......... done `-- Extracting qt4-corelib-4.8.7_5: .......... done `-- Installing png-1.6.23... `-- Extracting png-1.6.23: .......... done `-- Installing fontconfig-2.12.1,1... | `-- Installing freetype2-2.6.3... | `-- Extracting freetype2-2.6.3: .......... done `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: caching, new cache contents: 0 fonts, 2 dirs /usr/local/share/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs /usr/local/share/fonts/encodings/large: caching, new cache contents: 0 fonts, 0 dirs /usr/local/share/fonts/util: caching, new cache contents: 0 fonts, 0 dirs /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded `-- Installing xorg-fonts-truetype-7.7_1... | `-- Installing font-misc-meltho-1.0.3_3... | | `-- Installing mkfontdir-1.0.7... | | `-- Installing mkfontscale-1.1.2... | | | `-- Installing libfontenc-1.1.3... | | | `-- Extracting libfontenc-1.1.3: ...... done | | `-- Extracting mkfontscale-1.1.2: .. done | | `-- Extracting mkfontdir-1.0.7: .. done | `-- Extracting font-misc-meltho-1.0.3_3: .......... done | `-- Installing font-bh-ttf-1.0.3_3... | `-- Extracting font-bh-ttf-1.0.3_3: .......... done | `-- Installing font-misc-ethiopic-1.0.3_3... | `-- Extracting font-misc-ethiopic-1.0.3_3: ... done | `-- Installing dejavu-2.35... | `-- Extracting dejavu-2.35: .......... done `-- Installing cups-2.1.4... | `-- Installing avahi-app-0.6.31_5... | | `-- Installing gnome_subr-1.0... | | `-- Extracting gnome_subr-1.0: . done | | `-- Installing gobject-introspection-1.46.0... | | `-- Extracting gobject-introspection-1.46.0: .......... done | | `-- Installing gdbm-1.12... | | `-- Extracting gdbm-1.12: .......... done | | `-- Installing libdaemon-0.14_1... | | `-- Extracting libdaemon-0.14_1: .......... done | | `-- Installing dbus-glib-0.104... | | `-- Installing dbus-1.8.20... ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. | | `-- Extracting dbus-1.8.20: ......... done | | `-- Extracting dbus-glib-0.104: .......... done ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. | `-- Extracting avahi-app-0.6.31_5: .......... done | `-- Installing gnutls-3.4.15... | | `-- Installing nettle-3.2... | | `-- Extracting nettle-3.2: .......... done | | `-- Installing libtasn1-4.9... | | `-- Extracting libtasn1-4.9: .......... done | | `-- Installing trousers-0.3.13_1... | | `-- Installing tpm-emulator-0.7.4_1... ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. | | `-- Extracting tpm-emulator-0.7.4_1: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | `-- Extracting trousers-0.3.13_1: .......... done | | `-- Installing p11-kit-0.23.2... | | `-- Extracting p11-kit-0.23.2: .......... done | | `-- Installing libidn-1.33_1... | | `-- Extracting libidn-1.33_1: .......... done | `-- Extracting gnutls-3.4.15: .......... done | `-- Installing libpaper-1.1.24.4... | `-- Extracting libpaper-1.1.24.4: .......... done ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. `-- Extracting cups-2.1.4: .......... done `-- Installing libXi-1.7.6,1... | `-- Installing inputproto-2.3.1... | `-- Extracting inputproto-2.3.1: ..... done `-- Extracting libXi-1.7.6,1: .......... done `-- Installing libXrandr-1.5.0... | `-- Installing randrproto-1.5.0... | `-- Extracting randrproto-1.5.0: .... done `-- Extracting libXrandr-1.5.0: .......... done Extracting qt4-gui-4.8.7_1: .......... done Message from qt4-corelib-4.8.7_5: ====================================================================== Qt 4 can be built with optional support for: - Common UNIX Printing System (CUPS) (enabled by default) - Network Audio System (NAS) - Qt style that renders using GTK (QGTKSTYLE) In order to enable them, you have to add QT4_OPTIONS= CUPS NAS QGTKSTYLE to your /etc/make.conf and compile devel/qt4-corelib and x11-toolkits/qt4-gui ports. Attention! Whenever you change the QT4_OPTIONS both devel/qt4-corelib and x11-toolkits/qt4-gui ports must be rebuilt! ====================================================================== Message from dejavu-2.35: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from trousers-0.3.13_1: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account ===> avogadro-1.1.1_3 depends on file: /usr/local/lib/qt4/libQtGui.so - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on file: /usr/local/bin/lrelease-qt4 - not found ===> Installing existing package /packages/All/qt4-linguisttools-4.8.7.txz Installing qt4-linguisttools-4.8.7... `-- Installing qt4-xml-4.8.7... `-- Extracting qt4-xml-4.8.7: .......... done Extracting qt4-linguisttools-4.8.7: ...... done ===> avogadro-1.1.1_3 depends on file: /usr/local/bin/lrelease-qt4 - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on file: /usr/local/bin/moc-qt4 - not found ===> Installing existing package /packages/All/qt4-moc-4.8.7_1.txz Installing qt4-moc-4.8.7_1... Extracting qt4-moc-4.8.7_1: .... done ===> avogadro-1.1.1_3 depends on file: /usr/local/bin/moc-qt4 - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on file: /usr/local/lib/qt4/libQtNetwork.so - not found ===> Installing existing package /packages/All/qt4-network-4.8.7.txz Installing qt4-network-4.8.7... Extracting qt4-network-4.8.7: .......... done ===> avogadro-1.1.1_3 depends on file: /usr/local/lib/qt4/libQtNetwork.so - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on file: /usr/local/lib/qt4/libQtOpenGL.so - not found ===> Installing existing package /packages/All/qt4-opengl-4.8.7.txz Installing qt4-opengl-4.8.7... Extracting qt4-opengl-4.8.7: .......... done ===> avogadro-1.1.1_3 depends on file: /usr/local/lib/qt4/libQtOpenGL.so - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on file: /usr/local/bin/qmake-qt4 - not found ===> Installing existing package /packages/All/qt4-qmake-4.8.7.txz Installing qt4-qmake-4.8.7... Extracting qt4-qmake-4.8.7: .......... done ===> avogadro-1.1.1_3 depends on file: /usr/local/bin/qmake-qt4 - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on file: /usr/local/bin/rcc - not found ===> Installing existing package /packages/All/qt4-rcc-4.8.7.txz Installing qt4-rcc-4.8.7... Extracting qt4-rcc-4.8.7: .... done ===> avogadro-1.1.1_3 depends on file: /usr/local/bin/rcc - found ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on file: /usr/local/bin/uic-qt4 - not found ===> Installing existing package /packages/All/qt4-uic-4.8.7.txz Installing qt4-uic-4.8.7... Extracting qt4-uic-4.8.7: .... done ===> avogadro-1.1.1_3 depends on file: /usr/local/bin/uic-qt4 - found ===> Returning to build of avogadro-1.1.1_3 =========================================================================== =================================================== ===> avogadro-1.1.1_3 depends on shared library: libopenbabel.so - not found ===> Installing existing package /packages/All/openbabel-2.3.2_2.txz Installing openbabel-2.3.2_2... Extracting openbabel-2.3.2_2: .......... done ===> avogadro-1.1.1_3 depends on shared library: libopenbabel.so - found (/usr/local/lib/libopenbabel.so) ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on shared library: libboost_python.so - not found ===> Installing existing package /packages/All/boost-python-libs-1.55.0.txz Installing boost-python-libs-1.55.0... `-- Installing boost-libs-1.55.0_13... `-- Extracting boost-libs-1.55.0_13: .......... done Extracting boost-python-libs-1.55.0: .... done Message from boost-libs-1.55.0_13: You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. Message from boost-python-libs-1.55.0: You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. You have built the Boost.Python library. You have to add the following options when building your own code: Compiler options: -I/usr/local/include/python2.7 -I/usr/local/include Linker options: -L/usr/local/lib/python2.7 -L/usr/local/lib -lboost_python -lpython2.7 ===> avogadro-1.1.1_3 depends on shared library: libboost_python.so - found (/usr/local/lib/libboost_python.so) ===> Returning to build of avogadro-1.1.1_3 ===> avogadro-1.1.1_3 depends on shared library: libGLU.so - not found ===> Installing existing package /packages/All/libGLU-9.0.0_2.txz Installing libGLU-9.0.0_2... Extracting libGLU-9.0.0_2: ...... done ===> avogadro-1.1.1_3 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so) ===> Returning to build of avogadro-1.1.1_3 =========================================================================== =================================================== ===> Configuring for avogadro-1.1.1_3 ===> Performing in-source build /bin/mkdir -p /wrkdirs/science/avogadro/avogadro-1.1.1 -- The C compiler identification is GNU 5.4.1 -- The CXX compiler identification is GNU 5.4.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The build type is Release -- Performing Test HAVE_NO_RTTI -- Performing Test HAVE_NO_RTTI - Success -- Performing Test HAVE_RTTI -- Performing Test HAVE_RTTI - Success -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Performing Test COMPILES_WITHOUT_FPERMISSIVE -- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/local/bin/qmake-qt4 (found suitable version "4.8.7", minimum required is "4.6.0") -- Found OpenGL: /usr/local/lib/libGL.so -- Found lupdate: /usr/local/bin/lupdate-qt4 -- Found lrelease: /usr/local/bin/lrelease-qt4 -- Found lconvert: /usr/local/bin/lconvert -- Looking for XOpenDisplay in /usr/local/lib/libX11.so;/usr/local/lib/libXext.so -- Looking for XOpenDisplay in /usr/local/lib/libX11.so;/usr/local/lib/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/local/lib/libX11.so -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") -- Cannot find Eigen3, trying Eigen2 -- Found Eigen2: /usr/local/include/eigen2 (Required is at least version "2.0.0") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.8") -- Found PkgConfig: pkgconf (found version "1.0.1") -- Checking for module 'openbabel-2.0>=2.3.0' -- Found openbabel-2.0, version 2.3.2 -- Found OpenBabel 2.3 or later: openbabel -- Found OpenBabel2 executable: /usr/local/bin/babel -- Found Git revision is: -- Building released version. -- Searching for python dependencies... -- [1/5] Boost Python -- Boost version: 1.55.0 -- Found the following Boost libraries: -- python -- Boost Python found... -- [2/5] Python Libraries -- Found PythonLibs: /usr/local/lib/libpython2.7.so -- [3/5] Python Interpreter -- Found PythonInterp: /usr/local/bin/python2.7 (found version "2.7.12") -- [4/5] Numpy Module -- Numpy headers found -- [5/5] SIP Module -- SIP version 266496 found -- Found SIP: /wrkdirs/science/avogadro/include/python2.7 -- All python dependencies found - Python support enabled -- Threaded OpenGL rendering not enabled -- RPath support enabled for installed binaries and libraries -- Setting new boost python libraries -- Enabled python terminal -- Found Qt4: /usr/local/bin/qmake-qt4 (found suitable version "4.8.7", minimum required is "4.6") -- Linking in static plugins: bsdyengine;navigatetool;elementcolor -- Python site-packages directory: /usr/local/lib/python2.7/site-packages -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- docbook tools not found, doc targets disabled -- Configuring done CMake Warning (dev) in libavogadro/src/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "avogadro" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: openbabel;/usr/local/lib/qt4/libQtOpenGL.so;/usr/local/lib/qt4/libQtGui.so;/usr/local/lib/qt4/libQtCore.so;/usr/local/lib/libGLU.so;/usr/local/lib/libGL.so;/usr/local/lib/libpython2.7.so;/usr/local/lib/libboost_python.so;bsdyengine;navigatetool;elementcolor LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in libavogadro/src/extensions/surfaces/openqube/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "OpenQube" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: $<$>:/usr/local/lib/qt4/libQtCore.so>;$<$:/usr/local/lib/qt4/libQtCore.so> LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_DEBUG THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/science/avogadro/avogadro-1.1.1 =========================================================================== =================================================== ===> Building for avogadro-1.1.1_3 /usr/local/bin/cmake -H/wrkdirs/science/avogadro/avogadro-1.1.1 -B/wrkdirs/science/avogadro/avogadro-1.1.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/science/avogadro/avogadro-1.1.1/CMakeFiles /wrkdirs/science/avogadro/avogadro-1.1.1/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- libavogadro/src/engines/CMakeFiles/bsdyengine.dir/all --- --- libavogadro/src/tools/CMakeFiles/navigatetool.dir/all --- --- libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/all --- --- 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-I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/spglib.dir/symmetry_kpoint.c.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/symmetry_kpoint.c --- libavogadro/src/extensions/crystallography/spglib/libspglib.a --- [ 3%] Linking C static library libspglib.a cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib && /usr/local/bin/cmake -P CMakeFiles/spglib.dir/cmake_clean_target.cmake cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/spglib.dir/link.txt --verbose=1 /usr/bin/ar qc libspglib.a CMakeFiles/spglib.dir/cell.c.o CMakeFiles/spglib.dir/debug.c.o CMakeFiles/spglib.dir/hall_symbol.c.o CMakeFiles/spglib.dir/lattice.c.o CMakeFiles/spglib.dir/mathfunc.c.o CMakeFiles/spglib.dir/pointgroup.c.o CMakeFiles/spglib.dir/primitive.c.o CMakeFiles/spglib.dir/refinement.c.o CMakeFiles/spglib.dir/spacegroup.c.o CMakeFiles/spglib.dir/spg_database.c.o CMakeFiles/spglib.dir/spglib.c.o CMakeFiles/spglib.dir/symmetry.c.o CMakeFiles/spglib.dir/symmetry_kpoint.c.o /usr/bin/ranlib libspglib.a [ 3%] Built target spglib --- libavogadro/src/colors/CMakeFiles/elementcolor.dir/all --- /usr/bin/make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend --- libavogadro/src/colors/moc_elementcolor.cxx --- [ 3%] Generating moc_elementcolor.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_elementcolor.cxx_parameters --- libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/all --- --- libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o --- [ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/tubegen.dir/diamond.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp --- libavogadro/src/colors/CMakeFiles/elementcolor.dir/all --- --- libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake Scanning dependencies of target elementcolor /usr/bin/make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build --- libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o --- [ 3%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/elementcolor.cpp --- libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/all --- --- libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o --- [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp --- libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o --- [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp --- libavogadro/src/engines/CMakeFiles/bsdyengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o --- [ 4%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_bsdyengine.cxx --- libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/all --- --- libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o --- [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/tubegen.dir/TubeGen.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp --- libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o --- [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all --- --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/cube.cpp.o --- [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/cube.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/OpenQube.dir/cube.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/cube.cpp --- libavogadro/src/colors/CMakeFiles/elementcolor.dir/all --- --- libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o --- [ 4%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_elementcolor.cxx --- libavogadro/src/tools/CMakeFiles/navigatetool.dir/all --- --- libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o --- [ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_navigatetool.cxx --- libavogadro/src/colors/CMakeFiles/elementcolor.dir/all --- --- libavogadro/src/colors/elementcolor.a --- [ 4%] Linking CXX static library elementcolor.a cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 /usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o /usr/bin/ranlib elementcolor.a [ 4%] Built target elementcolor --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all --- --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o --- [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/OpenQube.dir/gamessukout.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp --- libavogadro/src/tools/CMakeFiles/navigatetool.dir/all --- --- libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o --- [ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_navigatetool.cxx --- libavogadro/src/tools/navigatetool.a --- [ 5%] Linking CXX static library navigatetool.a cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/cmake -P CMakeFiles/navigatetool.dir/cmake_clean_target.cmake --- libavogadro/src/engines/CMakeFiles/bsdyengine.dir/all --- --- libavogadro/src/engines/bsdyengine.a --- --- libavogadro/src/tools/CMakeFiles/navigatetool.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 /usr/bin/ar qc navigatetool.a CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o /usr/bin/ranlib navigatetool.a --- libavogadro/src/engines/CMakeFiles/bsdyengine.dir/all --- [ 5%] Linking CXX static library bsdyengine.a cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake --- libavogadro/src/tools/CMakeFiles/navigatetool.dir/all --- [ 5%] Built target navigatetool --- libavogadro/src/engines/CMakeFiles/bsdyengine.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all --- --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessus.cpp.o --- [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessus.cpp.o --- libavogadro/src/engines/CMakeFiles/bsdyengine.dir/all --- /usr/bin/ar qc bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/OpenQube.dir/gamessus.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp --- libavogadro/src/engines/CMakeFiles/bsdyengine.dir/all --- /usr/bin/ranlib bsdyengine.a [ 5%] Built target bsdyengine --- libavogadro/src/CMakeFiles/avogadro.dir/all --- /usr/bin/make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend --- libavogadro/src/moc_animation.cxx --- [ 5%] Generating moc_animation.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_animation.cxx_parameters --- libavogadro/src/moc_atom.cxx --- [ 5%] Generating moc_atom.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_atom.cxx_parameters --- libavogadro/src/moc_bond.cxx --- [ 5%] Generating moc_bond.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_bond.cxx_parameters --- libavogadro/src/moc_color.cxx --- [ 5%] Generating moc_color.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_color.cxx_parameters --- libavogadro/src/moc_colorbutton.cxx --- [ 5%] Generating moc_colorbutton.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_colorbutton.cxx_parameters --- libavogadro/src/moc_cube.cxx --- [ 5%] Generating moc_cube.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_cube.cxx_parameters --- libavogadro/src/moc_dockextension.cxx --- [ 5%] Generating moc_dockextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_dockextension.cxx_parameters --- libavogadro/src/moc_dockwidget.cxx --- --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all --- --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o --- [ 6%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/all --- [ 7%] Generating moc_dockwidget.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_dockwidget.cxx_parameters --- libavogadro/src/moc_elementdetail_p.cxx --- [ 7%] Generating moc_elementdetail_p.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_elementdetail_p.cxx_parameters --- libavogadro/src/moc_elementtranslator.cxx --- [ 7%] Generating moc_elementtranslator.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_elementtranslator.cxx_parameters --- libavogadro/src/moc_engine.cxx --- [ 7%] Generating moc_engine.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_engine.cxx_parameters --- libavogadro/src/moc_extension.cxx --- [ 7%] Generating moc_extension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_extension.cxx_parameters --- libavogadro/src/moc_fragment.cxx --- [ 7%] Generating moc_fragment.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_fragment.cxx_parameters --- libavogadro/src/moc_glwidget.cxx --- [ 7%] Generating moc_glwidget.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_glwidget.cxx_parameters --- libavogadro/src/moc_mesh.cxx --- [ 7%] Generating moc_mesh.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_mesh.cxx_parameters --- libavogadro/src/moc_meshgenerator.cxx --- [ 7%] Generating moc_meshgenerator.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_meshgenerator.cxx_parameters --- libavogadro/src/moc_molecule.cxx --- [ 7%] Generating moc_molecule.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_molecule.cxx_parameters --- libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/all --- --- libavogadro/src/extensions/swcntbuilder/tubegen/libtubegen.a --- [ 7%] Linking CXX static library libtubegen.a cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/local/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 --- libavogadro/src/CMakeFiles/avogadro.dir/all --- --- libavogadro/src/moc_moleculefile.cxx --- --- libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/all --- /usr/bin/ar qc libtubegen.a CMakeFiles/tubegen.dir/Bitmap.c.o CMakeFiles/tubegen.dir/Core3DMath.c.o CMakeFiles/tubegen.dir/eprintf.c.o CMakeFiles/tubegen.dir/ANSR.cpp.o CMakeFiles/tubegen.dir/Cell.cpp.o CMakeFiles/tubegen.dir/CrystalCell.cpp.o CMakeFiles/tubegen.dir/diamond.cpp.o CMakeFiles/tubegen.dir/fcc.cpp.o CMakeFiles/tubegen.dir/graphite.cpp.o CMakeFiles/tubegen.dir/TubeGen.cpp.o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o /usr/bin/ranlib libtubegen.a --- libavogadro/src/CMakeFiles/avogadro.dir/all --- [ 8%] Generating moc_moleculefile.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_moleculefile.cxx_parameters --- libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/all --- [ 8%] Built target tubegen --- libavogadro/src/CMakeFiles/avogadro.dir/all --- --- libavogadro/src/moc_periodictablescene_p.cxx --- [ 8%] Generating moc_periodictablescene_p.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_periodictablescene_p.cxx_parameters --- libavogadro/src/moc_periodictableview.cxx --- [ 8%] Generating moc_periodictableview.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_periodictableview.cxx_parameters --- libavogadro/src/moc_plotwidget.cxx --- [ 8%] Generating moc_plotwidget.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_plotwidget.cxx_parameters --- libavogadro/src/moc_plugin.cxx --- [ 8%] Generating moc_plugin.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_plugin.cxx_parameters --- libavogadro/src/moc_pluginmanager.cxx --- --- libavogadro/src/moc_primitive.cxx --- --- libavogadro/src/moc_pluginmanager.cxx --- [ 8%] Generating moc_pluginmanager.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_pluginmanager.cxx_parameters --- libavogadro/src/moc_primitive.cxx --- [ 8%] Generating moc_primitive.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_primitive.cxx_parameters --- libavogadro/src/moc_protein.cxx --- [ 8%] Generating moc_protein.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_protein.cxx_parameters --- libavogadro/src/moc_readfilethread_p.cxx --- [ 8%] Generating moc_readfilethread_p.cxx --- libavogadro/src/moc_residue.cxx --- --- libavogadro/src/moc_readfilethread_p.cxx --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_readfilethread_p.cxx_parameters --- libavogadro/src/moc_residue.cxx --- [ 9%] Generating moc_residue.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_residue.cxx_parameters --- libavogadro/src/moc_textmatrixeditor.cxx --- [ 9%] Generating moc_textmatrixeditor.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_textmatrixeditor.cxx_parameters --- libavogadro/src/moc_tool.cxx --- [ 9%] Generating moc_tool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_tool.cxx_parameters --- libavogadro/src/moc_toolgroup.cxx --- [ 9%] Generating moc_toolgroup.cxx --- libavogadro/src/moc_zmatrix.cxx --- --- libavogadro/src/moc_toolgroup.cxx --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_toolgroup.cxx_parameters --- libavogadro/src/moc_zmatrix.cxx --- [ 9%] Generating moc_zmatrix.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_zmatrix.cxx_parameters --- libavogadro/src/moc_pythonengine_p.cxx --- --- libavogadro/src/moc_pythonerror.cxx --- --- libavogadro/src/moc_pythonengine_p.cxx --- [ 9%] Generating moc_pythonengine_p.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_pythonengine_p.cxx_parameters --- libavogadro/src/moc_pythonerror.cxx --- [ 9%] Generating moc_pythonerror.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_pythonerror.cxx_parameters --- libavogadro/src/moc_pythonextension_p.cxx --- [ 9%] Generating moc_pythonextension_p.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_pythonextension_p.cxx_parameters --- libavogadro/src/moc_pythontool_p.cxx --- [ 9%] Generating moc_pythontool_p.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_pythontool_p.cxx_parameters --- libavogadro/src/libavogadro_ar.qm --- [ 9%] Generating libavogadro_ar.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/ar.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ar.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ar.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_bg.qm --- [ 10%] Generating libavogadro_bg.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/bg.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_bg.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_bg.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_ar.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ar.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ar.qm --- libavogadro/src/libavogadro_bs.qm --- [ 10%] Generating libavogadro_bs.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/bs.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_bs.ts --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all --- --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianset.cpp.o --- [ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianset.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/OpenQube.dir/gaussianset.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molden.cpp.o --- --- libavogadro/src/CMakeFiles/avogadro.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_bs.ts --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all --- [ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molden.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/OpenQube.dir/molden.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molden.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/all --- Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_bg.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_bg.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_bg.qm --- libavogadro/src/libavogadro_ca.qm --- [ 10%] Generating libavogadro_ca.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/ca.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ca.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ca.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all --- --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molecule.cpp.o --- [ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molecule.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/OpenQube.dir/molecule.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molecule.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/all --- --- libavogadro/src/libavogadro_bs.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_bs.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_bs.qm --- libavogadro/src/libavogadro_ca@valencia.qm --- [ 10%] Generating libavogadro_ca@valencia.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/ca@valencia.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ca@valencia.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ca@valencia.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_ca.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ca.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ca.qm --- libavogadro/src/libavogadro_cs.qm --- [ 10%] Generating libavogadro_cs.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/cs.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_cs.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_cs.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all --- --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/mopacaux.cpp.o --- [ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/mopacaux.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/OpenQube.dir/mopacaux.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/all --- --- libavogadro/src/libavogadro_ca@valencia.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ca@valencia.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ca@valencia.qm --- libavogadro/src/libavogadro_da.qm --- [ 10%] Generating libavogadro_da.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/da.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_da.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_da.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_cs.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_cs.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_cs.qm --- libavogadro/src/libavogadro_de.qm --- [ 10%] Generating libavogadro_de.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/de.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_de.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_de.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all --- --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/slaterset.cpp.o --- [ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/slaterset.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/OpenQube.dir/slaterset.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_basisset.cxx.o --- [ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_basisset.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/all --- --- libavogadro/src/libavogadro_da.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_da.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_da.qm --- libavogadro/src/libavogadro_el.qm --- [ 10%] Generating libavogadro_el.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/el.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_el.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_el.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_de.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_de.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_de.qm --- libavogadro/src/libavogadro_en_AU.qm --- [ 10%] Generating libavogadro_en_AU.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/en_AU.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_en_AU.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_en_AU.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all --- --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o --- [ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o --- [ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/all --- --- libavogadro/src/libavogadro_el.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_el.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_el.qm --- libavogadro/src/libavogadro_en_CA.qm --- [ 11%] Generating libavogadro_en_CA.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/en_CA.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_en_CA.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_en_CA.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_en_AU.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_en_AU.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_en_AU.qm --- libavogadro/src/libavogadro_en_GB.qm --- [ 11%] Generating libavogadro_en_GB.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/en_GB.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_en_GB.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_en_GB.ts --- libavogadro/src/libavogadro_es.qm --- --- libavogadro/src/libavogadro_en_GB.qm --- Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_es.qm --- [ 11%] Generating libavogadro_es.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/es.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_es.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_es.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_et.qm --- [ 11%] Generating libavogadro_et.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/et.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_et.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_et.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_en_CA.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_en_CA.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_en_CA.qm --- libavogadro/src/libavogadro_eu.qm --- [ 11%] Generating libavogadro_eu.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/eu.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_eu.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_eu.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_es.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_es.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_es.qm --- libavogadro/src/libavogadro_fi.qm --- [ 11%] Generating libavogadro_fi.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/fi.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_fi.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_fi.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_et.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_et.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_et.qm --- libavogadro/src/libavogadro_fr.qm --- [ 11%] Generating libavogadro_fr.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/fr.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_fr.ts --- libavogadro/src/libavogadro_en_GB.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_en_GB.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_en_GB.qm --- libavogadro/src/libavogadro_fr.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_fr.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_gl.qm --- [ 11%] Generating libavogadro_gl.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/gl.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_gl.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_gl.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_eu.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_eu.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_eu.qm --- libavogadro/src/libavogadro_he.qm --- [ 11%] Generating libavogadro_he.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/he.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_he.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_he.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_fi.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_fi.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_fi.qm --- libavogadro/src/libavogadro_fr.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_fr.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_fr.qm --- libavogadro/src/libavogadro_hi.qm --- [ 11%] Generating libavogadro_hi.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/hi.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_hi.ts --- libavogadro/src/libavogadro_hu.qm --- [ 12%] Generating libavogadro_hu.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/hu.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_hu.ts --- libavogadro/src/libavogadro_hi.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_hi.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_hu.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_hu.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_gl.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_gl.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_gl.qm --- libavogadro/src/libavogadro_id.qm --- [ 12%] Generating libavogadro_id.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/id.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_id.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_id.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_he.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_he.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_he.qm --- libavogadro/src/libavogadro_it.qm --- [ 12%] Generating libavogadro_it.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/it.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_it.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_it.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_hi.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_hi.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_hi.qm --- libavogadro/src/libavogadro_ja.qm --- [ 12%] Generating libavogadro_ja.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/ja.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ja.ts --- libavogadro/src/libavogadro_hu.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_hu.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_hu.qm --- libavogadro/src/libavogadro_ja.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ja.ts --- libavogadro/src/libavogadro_kn.qm --- --- libavogadro/src/libavogadro_ja.qm --- Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_kn.qm --- [ 12%] Generating libavogadro_kn.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/kn.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_kn.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_kn.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_ja.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ja.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ja.qm --- libavogadro/src/libavogadro_ko.qm --- [ 12%] Generating libavogadro_ko.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/ko.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ko.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ko.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_it.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_it.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_it.qm --- libavogadro/src/libavogadro_ms.qm --- [ 12%] Generating libavogadro_ms.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/ms.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ms.ts --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all --- --- lib/libavogadro_OpenQube.so.0.1.0 --- [ 12%] Linking CXX shared library ../../../../../lib/libavogadro_OpenQube.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/OpenQube.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -Wl,-soname,libavogadro_OpenQube.so.0 -o ../../../../../lib/libavogadro_OpenQube.so.0.1.0 CMakeFiles/OpenQube.dir/atom.cpp.o CMakeFiles/OpenQube.dir/basisset.cpp.o CMakeFiles/OpenQube.dir/basissetloader.cpp.o CMakeFiles/OpenQube.dir/cube.cpp.o CMakeFiles/OpenQube.dir/gamessukout.cpp.o CMakeFiles/OpenQube.dir/gamessus.cpp.o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o CMakeFiles/OpenQube.dir/gaussianset.cpp.o CMakeFiles/OpenQube.dir/molden.cpp.o CMakeFiles/OpenQube.dir/molecule.cpp.o CMakeFiles/OpenQube.dir/mopacaux.cpp.o CMakeFiles/OpenQube.dir/slaterset.cpp.o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -L/usr/local/lib /usr/local/lib/qt4/libQtCore.so -Wl,-rpath,/usr/local/lib:/usr/local/lib/qt4 --- libavogadro/src/CMakeFiles/avogadro.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ms.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube && /usr/local/bin/cmake -E cmake_symlink_library ../../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../../lib/libavogadro_OpenQube.so.0 ../../../../../lib/libavogadro_OpenQube.so [ 13%] Built target OpenQube --- libavogadro/src/CMakeFiles/avogadro.dir/all --- --- libavogadro/src/libavogadro_nb.qm --- [ 13%] Generating libavogadro_nb.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/nb.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_nb.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_nb.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_id.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_id.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_id.qm --- libavogadro/src/libavogadro_nl.qm --- [ 13%] Generating libavogadro_nl.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/nl.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_nl.ts --- libavogadro/src/libavogadro_kn.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_kn.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_kn.qm --- libavogadro/src/libavogadro_nl.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_nl.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_oc.qm --- [ 13%] Generating libavogadro_oc.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/oc.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_oc.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_oc.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_ko.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ko.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ko.qm --- libavogadro/src/libavogadro_pl.qm --- [ 14%] Generating libavogadro_pl.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/pl.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_pl.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_pl.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_ms.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ms.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ms.qm --- libavogadro/src/libavogadro_pt.qm --- [ 14%] Generating libavogadro_pt.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/pt.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_pt.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_pt.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_nl.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_nl.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_nl.qm --- libavogadro/src/libavogadro_pt_BR.qm --- [ 14%] Generating libavogadro_pt_BR.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/pt_BR.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_pt_BR.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_pt_BR.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_pl.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_pl.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_pl.qm --- libavogadro/src/libavogadro_ru.qm --- [ 14%] Generating libavogadro_ru.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/ru.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ru.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ru.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_nb.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_nb.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_nb.qm --- libavogadro/src/libavogadro_sk.qm --- [ 14%] Generating libavogadro_sk.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/sk.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sk.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sk.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_oc.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_oc.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_oc.qm --- libavogadro/src/libavogadro_sl.qm --- [ 14%] Generating libavogadro_sl.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/sl.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sl.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sl.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_sk.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sk.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sk.qm --- libavogadro/src/libavogadro_sq.qm --- [ 14%] Generating libavogadro_sq.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/sq.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sq.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sq.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_ru.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ru.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ru.qm --- libavogadro/src/libavogadro_sr.qm --- [ 14%] Generating libavogadro_sr.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/sr.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sr.ts --- libavogadro/src/libavogadro_pt.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_pt.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_pt.qm --- libavogadro/src/libavogadro_sr.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sr.ts --- libavogadro/src/libavogadro_sv.qm --- --- libavogadro/src/libavogadro_sr.qm --- Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_sv.qm --- [ 14%] Generating libavogadro_sv.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/sv.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sv.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sv.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_sl.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sl.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sl.qm --- libavogadro/src/libavogadro_tr.qm --- [ 15%] Generating libavogadro_tr.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/tr.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_tr.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_tr.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_sq.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sq.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sq.qm --- libavogadro/src/libavogadro_ug.qm --- [ 15%] Generating libavogadro_ug.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/ug.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ug.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ug.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_pt_BR.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_pt_BR.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_pt_BR.qm --- libavogadro/src/libavogadro_uk.qm --- [ 15%] Generating libavogadro_uk.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/uk.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_uk.ts --- libavogadro/src/libavogadro_sr.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sr.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sr.qm --- libavogadro/src/libavogadro_uk.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_uk.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_vi.qm --- [ 15%] Generating libavogadro_vi.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/vi.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_vi.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_vi.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_sv.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sv.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_sv.qm --- libavogadro/src/libavogadro_zh_CN.qm --- [ 15%] Generating libavogadro_zh_CN.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/zh_CN.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_zh_CN.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_zh_CN.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_tr.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_tr.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_tr.qm --- libavogadro/src/libavogadro_zh_TW.qm --- [ 15%] Generating libavogadro_zh_TW.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/libavogadro/zh_TW.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_zh_TW.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_zh_TW.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src'... --- libavogadro/src/libavogadro_vi.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_vi.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_vi.qm --- libavogadro/src/qrc_pythontool.cxx --- [ 15%] Generating qrc_pythontool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/rcc -name pythontool -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/qrc_pythontool.cxx /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/pythontool.qrc --- libavogadro/src/libavogadro_zh_CN.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_zh_CN.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_zh_CN.qm --- libavogadro/src/libavogadro_ug.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ug.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_ug.qm --- libavogadro/src/libavogadro_uk.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_uk.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_uk.qm --- libavogadro/src/libavogadro_zh_TW.qm --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_zh_TW.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/libavogadro_zh_TW.qm --- libavogadro/src/CMakeFiles/avogadro.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake Scanning dependencies of target avogadro /usr/bin/make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build --- libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o --- --- libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o --- --- libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o --- --- libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o --- --- libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o --- --- libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o --- [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/camera.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/camera.cpp--- libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o --- [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o --- libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o --- [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o --- libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o --- [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o --- libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/color.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/color.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/animation.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/animation.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/atom.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/atom.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o --- [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/bond.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/bond.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o --- [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colorbutton.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o --- [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/cube.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/cube.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o --- [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/cylinder_p.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/dockextension.cpp.o --- [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/dockextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/dockextension.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/dockwidget.cpp.o --- [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockwidget.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden 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-I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/elementdetail_p.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o --- [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/elementitem_p.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/elementitem_p.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o --- [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB 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CMakeFiles/avogadro.dir/engine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engine.cpp--- libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o --- [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden 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/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/global.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/global.cpp--- libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o --- [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden 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-I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/glwidget.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/glwidget.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o --- --- libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o --- --- libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o --- [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/idlist.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/idlist.cpp--- libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o --- --- libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o --- [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/mesh.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/mesh.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o --- [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/meshgenerator.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/meshgenerator.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o --- [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/molecule.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/molecule.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o --- [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moleculefile.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moleculefile.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o --- [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE 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/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/neighborlist.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o --- [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden 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-I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/periodictablescene_p.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o --- [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/periodictableview.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/periodictableview.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o --- [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/plotaxis.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/plotaxis.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/plotobject.cpp.o --- [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotobject.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/plotobject.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/plotobject.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o --- [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing 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-I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/plotwidget.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/plotwidget.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o --- [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/plugin.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/plugin.cpp--- libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o --- [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/pluginmanager.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/pluginmanager.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o --- [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/primitive.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/primitive.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o --- [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/primitivelist.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/primitivelist.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o --- [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/protein.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/protein.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/readfilethread_p.cpp.o --- [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/readfilethread_p.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/readfilethread_p.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o --- [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/residue.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/residue.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o --- [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/sphere_p.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/sphere_p.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o --- [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/textrenderer_p.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o --- [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/textmatrixeditor.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o --- [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/tool.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tool.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o --- [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/toolgroup.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/toolgroup.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o --- [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/undosequence.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/undosequence.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/zmatrix.cpp.o --- [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/zmatrix.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing 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-I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/pythoninterpreter.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/pythonscript.cpp.o --- [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonscript.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/pythonscript.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/pythonscript.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/pythonerror.cpp.o --- [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonerror.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG 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libavogadro/src/CMakeFiles/avogadro.dir/pythontool_p.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/pythontool_p.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/pythontool_p.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o --- [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/pythonengine_p.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o --- [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/pythonextension_p.cpp --- libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o --- [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_animation.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_animation.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_atom.cxx.o --- [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_atom.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY 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-I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_colorbutton.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_cube.cxx.o --- [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_cube.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_cube.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_cube.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_dockextension.cxx.o --- [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG 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-fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_elementdetail_p.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o --- [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_elementtranslator.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_engine.cxx.o --- [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_engine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_engine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_engine.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_extension.cxx.o --- [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_extension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON 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libavogadro/src/CMakeFiles/avogadro.dir/moc_fragment.cxx.o --- [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_fragment.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_fragment.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_fragment.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_glwidget.cxx.o --- [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_glwidget.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 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-I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_mesh.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_mesh.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o --- [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS 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/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_molecule.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_molecule.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o --- [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden 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-I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_periodictablescene_p.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o --- [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_periodictableview.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o --- [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && 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libavogadro/src/CMakeFiles/avogadro.dir/moc_plugin.cxx.o --- [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plugin.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_plugin.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_plugin.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o --- [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_pluginmanager.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o --- [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_primitive.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_primitive.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_protein.cxx.o --- [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_protein.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_protein.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_protein.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o --- [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_readfilethread_p.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o --- --- libavogadro/src/CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o --- --- libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o --- [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_residue.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_residue.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o --- [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_textmatrixeditor.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_tool.cxx.o --- [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_tool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS 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/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_toolgroup.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o --- [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_zmatrix.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o --- [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_pythonengine_p.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o --- [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_pythonerror.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o --- [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_pythonextension_p.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o --- [ 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-o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/moc_pythontool_p.cxx --- libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o --- [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/qrc_pythontool.cxx --- lib/libavogadro.so.1.1.1 --- [ 25%] Linking CXX shared library ../../lib/libavogadro.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/avogadro.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -Wl,-soname,libavogadro.so.1 -o ../../lib/libavogadro.so.1.1.1 CMakeFiles/avogadro.dir/animation.cpp.o CMakeFiles/avogadro.dir/atom.cpp.o CMakeFiles/avogadro.dir/bond.cpp.o CMakeFiles/avogadro.dir/camera.cpp.o CMakeFiles/avogadro.dir/color.cpp.o CMakeFiles/avogadro.dir/colorbutton.cpp.o CMakeFiles/avogadro.dir/cube.cpp.o CMakeFiles/avogadro.dir/cylinder_p.cpp.o CMakeFiles/avogadro.dir/dockextension.cpp.o CMakeFiles/avogadro.dir/dockwidget.cpp.o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o CMakeFiles/avogadro.dir/elementitem_p.cpp.o CMakeFiles/avogadro.dir/elementtranslator.cpp.o CMakeFiles/avogadro.dir/engine.cpp.o CMakeFiles/avogadro.dir/extension.cpp.o CMakeFiles/avogadro.dir/fragment.cpp.o CMakeFiles/avogadro.dir/glhit.cpp.o CMakeFiles/avogadro.dir/global.cpp.o CMakeFiles/avogadro.dir/glpainter_p.cpp.o CMakeFiles/avogadro.dir/glwidget.cpp.o CMakeFiles/avogadro.dir/idlist.cpp.o CMakeFiles/avogadro.dir/mesh.cpp.o CMakeFiles/avogadro.dir/meshgenerator.cpp.o CMakeFiles/avogadro.dir/molecule.cpp.o CMakeFiles/avogadro.dir/moleculefile.cpp.o CMakeFiles/avogadro.dir/navigate.cpp.o CMakeFiles/avogadro.dir/neighborlist.cpp.o CMakeFiles/avogadro.dir/painter.cpp.o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o CMakeFiles/avogadro.dir/periodictableview.cpp.o CMakeFiles/avogadro.dir/plotaxis.cpp.o CMakeFiles/avogadro.dir/plotobject.cpp.o CMakeFiles/avogadro.dir/plotpoint.cpp.o CMakeFiles/avogadro.dir/plotwidget.cpp.o CMakeFiles/avogadro.dir/plugin.cpp.o CMakeFiles/avogadro.dir/pluginmanager.cpp.o CMakeFiles/avogadro.dir/primitive.cpp.o CMakeFiles/avogadro.dir/primitivelist.cpp.o CMakeFiles/avogadro.dir/protein.cpp.o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o CMakeFiles/avogadro.dir/residue.cpp.o CMakeFiles/avogadro.dir/sphere_p.cpp.o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o CMakeFiles/avogadro.dir/tool.cpp.o CMakeFiles/avogadro.dir/toolgroup.cpp.o CMakeFiles/avogadro.dir/undosequence.cpp.o CMakeFiles/avogadro.dir/zmatrix.cpp.o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o CMakeFiles/avogadro.dir/pythonscript.cpp.o CMakeFiles/avogadro.dir/pythonerror.cpp.o CMakeFiles/avogadro.dir/pythontool_p.cpp.o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o CMakeFiles/avogadro.dir/moc_animation.cxx.o CMakeFiles/avogadro.dir/moc_atom.cxx.o CMakeFiles/avogadro.dir/moc_bond.cxx.o CMakeFiles/avogadro.dir/moc_color.cxx.o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o CMakeFiles/avogadro.dir/moc_cube.cxx.o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o CMakeFiles/avogadro.dir/moc_engine.cxx.o CMakeFiles/avogadro.dir/moc_extension.cxx.o CMakeFiles/avogadro.dir/moc_fragment.cxx.o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o CMakeFiles/avogadro.dir/moc_mesh.cxx.o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o CMakeFiles/avogadro.dir/moc_molecule.cxx.o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o CMakeFiles/avogadro.dir/moc_plugin.cxx.o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o CMakeFiles/avogadro.dir/moc_primitive.cxx.o CMakeFiles/avogadro.dir/moc_protein.cxx.o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o CMakeFiles/avogadro.dir/moc_residue.cxx.o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o CMakeFiles/avogadro.dir/moc_tool.cxx.o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -L/usr/local/lib -lopenbabel /usr/local/lib/qt4/libQtOpenGL.so /usr/local/lib/qt4/libQtGui.so /usr/local/lib/qt4/libQtCore.so /usr/local/lib/libGLU.so /usr/local/lib/libGL.so /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python.so engines/bsdyengine.a tools/navigatetool.a colors/elementcolor.a -lopenbabel /usr/local/lib/qt4/libQtGui.so /usr/local/lib/qt4/libQtCore.so /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/usr/local/lib/qt4 cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libavogadro.so.1.1.1 ../../lib/libavogadro.so.1 ../../lib/libavogadro.so [ 25%] Built target avogadro --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/axesengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/forceengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/ringengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend --- libavogadro/src/engines/CMakeFiles/axesengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend --- libavogadro/src/engines/CMakeFiles/forceengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend --- libavogadro/src/engines/CMakeFiles/ringengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/all --- --- libavogadro/src/engines/moc_cartoonengine.cxx --- --- libavogadro/src/engines/CMakeFiles/forceengine.dir/all --- --- libavogadro/src/engines/moc_forceengine.cxx --- --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- --- libavogadro/src/engines/moc_stickengine.cxx --- --- libavogadro/src/engines/CMakeFiles/ringengine.dir/all --- --- libavogadro/src/engines/moc_ringengine.cxx --- --- libavogadro/src/engines/CMakeFiles/axesengine.dir/all --- --- libavogadro/src/engines/moc_axesengine.cxx --- --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- [ 25%] Generating moc_stickengine.cxx --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/all --- [ 25%] Generating moc_cartoonengine.cxx --- libavogadro/src/engines/CMakeFiles/forceengine.dir/all --- [ 25%] Generating moc_forceengine.cxx --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_cartoonengine.cxx_parameters --- libavogadro/src/engines/CMakeFiles/forceengine.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_forceengine.cxx_parameters --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_stickengine.cxx_parameters --- libavogadro/src/engines/CMakeFiles/ringengine.dir/all --- [ 25%] Generating moc_ringengine.cxx --- libavogadro/src/engines/CMakeFiles/axesengine.dir/all --- [ 25%] Generating moc_axesengine.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_axesengine.cxx_parameters --- libavogadro/src/engines/CMakeFiles/ringengine.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_ringengine.cxx_parameters --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- --- libavogadro/src/engines/ui_sticksettingswidget.h --- [ 25%] Generating ui_sticksettingswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ui_sticksettingswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/sticksettingswidget.ui --- libavogadro/src/engines/CMakeFiles/axesengine.dir/all --- --- libavogadro/src/engines/ui_axessettingswidget.h --- --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/stickengine.dir/depend --- --- libavogadro/src/engines/CMakeFiles/axesengine.dir/all --- [ 25%] Generating ui_axessettingswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ui_axessettingswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/axessettingswidget.ui --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --- libavogadro/src/engines/CMakeFiles/forceengine.dir/all --- --- 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/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --- libavogadro/src/engines/CMakeFiles/ringengine.dir/all --- --- libavogadro/src/engines/ui_ringsettingswidget.h --- [ 25%] Generating ui_ringsettingswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ui_ringsettingswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ringsettingswidget.ui --- libavogadro/src/engines/CMakeFiles/ringengine.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines 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-I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/forceengine.cpp --- libavogadro/src/engines/CMakeFiles/ringengine.dir/all --- Scanning dependencies of target ringengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- Scanning dependencies of target stickengine --- libavogadro/src/engines/CMakeFiles/axesengine.dir/all --- Scanning dependencies of target axesengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build --- libavogadro/src/engines/CMakeFiles/ringengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o --- --- libavogadro/src/engines/CMakeFiles/axesengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o --- --- libavogadro/src/engines/CMakeFiles/ringengine.dir/all --- [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ringengine.cpp --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o --- --- libavogadro/src/engines/CMakeFiles/axesengine.dir/all --- [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/axesengine.cpp --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/stickengine.cpp --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/all --- --- libavogadro/src/engines/ui_cartoonsettingswidget.h --- [ 25%] Generating ui_cartoonsettingswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ui_cartoonsettingswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/cartoonsettingswidget.ui --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake Scanning dependencies of target cartoonengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o --- [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/cartoonmeshgenerator.cpp --- libavogadro/src/engines/CMakeFiles/forceengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o --- [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_forceengine.cxx --- libavogadro/src/engines/CMakeFiles/ringengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o --- [ 25%] Building 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/usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_ringengine.cxx --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o --- [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_stickengine.cxx --- libavogadro/src/engines/CMakeFiles/axesengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o --- [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_axesengine.cxx --- libavogadro/src/engines/CMakeFiles/forceengine.dir/all --- --- lib/forceengine.so --- [ 25%] Linking CXX shared module ../../../lib/forceengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 25%] Built target forceengine --- libavogadro/src/engines/CMakeFiles/sphereengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend --- libavogadro/src/engines/moc_sphereengine.cxx --- [ 25%] Generating moc_sphereengine.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_sphereengine.cxx_parameters --- libavogadro/src/engines/ui_spheresettingswidget.h --- --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o --- --- libavogadro/src/engines/CMakeFiles/sphereengine.dir/all --- [ 25%] Generating ui_spheresettingswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ui_spheresettingswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/spheresettingswidget.ui --- libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/all --- [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/cartoonengine.cpp --- libavogadro/src/engines/CMakeFiles/sphereengine.dir/all --- Scanning dependencies of target sphereengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build --- libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o --- [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/sphereengine.cpp --- libavogadro/src/engines/CMakeFiles/ringengine.dir/all --- --- lib/ringengine.so --- [ 25%] Linking CXX shared module ../../../lib/ringengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 25%] Built target ringengine --- libavogadro/src/engines/CMakeFiles/hbondengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend --- libavogadro/src/engines/moc_hbondengine.cxx --- [ 26%] Generating moc_hbondengine.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_hbondengine.cxx_parameters --- libavogadro/src/engines/ui_hbondsettingswidget.h --- [ 26%] Generating ui_hbondsettingswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ui_hbondsettingswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/hbondsettingswidget.ui --- libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake Scanning dependencies of target hbondengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build --- libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o --- [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/hbondengine.cpp --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- --- lib/stickengine.so --- --- libavogadro/src/engines/CMakeFiles/axesengine.dir/all --- --- lib/axesengine.so --- --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- [ 26%] Linking CXX shared module ../../../lib/stickengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 --- libavogadro/src/engines/CMakeFiles/axesengine.dir/all --- [ 26%] Linking CXX shared module ../../../lib/axesengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/engines/CMakeFiles/axesengine.dir/all --- /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 26%] Built target axesengine --- libavogadro/src/engines/CMakeFiles/dipoleengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend --- libavogadro/src/engines/moc_dipoleengine.cxx --- --- libavogadro/src/engines/CMakeFiles/stickengine.dir/all --- [ 26%] Built target stickengine --- libavogadro/src/engines/CMakeFiles/wireengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend --- libavogadro/src/engines/CMakeFiles/dipoleengine.dir/all --- [ 26%] Generating moc_dipoleengine.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_dipoleengine.cxx_parameters --- libavogadro/src/engines/CMakeFiles/wireengine.dir/all --- --- libavogadro/src/engines/moc_wireengine.cxx --- --- libavogadro/src/engines/CMakeFiles/dipoleengine.dir/all --- --- libavogadro/src/engines/ui_dipolesettingswidget.h --- [ 26%] Generating ui_dipolesettingswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ui_dipolesettingswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/dipolesettingswidget.ui --- libavogadro/src/engines/CMakeFiles/wireengine.dir/all --- [ 26%] Generating moc_wireengine.cxx --- libavogadro/src/engines/CMakeFiles/dipoleengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend --- --- libavogadro/src/engines/CMakeFiles/wireengine.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_wireengine.cxx_parameters --- libavogadro/src/engines/CMakeFiles/dipoleengine.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake Scanning dependencies of target dipoleengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build --- libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o --- --- libavogadro/src/engines/CMakeFiles/wireengine.dir/all --- --- libavogadro/src/engines/ui_wiresettingswidget.h --- --- libavogadro/src/engines/CMakeFiles/dipoleengine.dir/all --- [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/dipoleengine.cpp --- libavogadro/src/engines/CMakeFiles/wireengine.dir/all --- [ 26%] Generating ui_wiresettingswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ui_wiresettingswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/wiresettingswidget.ui --- libavogadro/src/engines/CMakeFiles/wireengine.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake Scanning dependencies of target wireengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build --- libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o --- [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/wireengine.cpp --- libavogadro/src/engines/CMakeFiles/sphereengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o --- [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_sphereengine.cxx --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o --- [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_cartoonengine.cxx --- libavogadro/src/engines/CMakeFiles/dipoleengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o --- [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_dipoleengine.cxx --- libavogadro/src/engines/CMakeFiles/hbondengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o --- [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_hbondengine.cxx --- libavogadro/src/engines/CMakeFiles/sphereengine.dir/all --- --- lib/sphereengine.so --- [ 26%] Linking CXX shared module ../../../lib/sphereengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/engines/CMakeFiles/wireengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o --- [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_wireengine.cxx --- libavogadro/src/engines/CMakeFiles/sphereengine.dir/all --- [ 27%] Built target sphereengine --- libavogadro/src/engines/CMakeFiles/polygonengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend --- libavogadro/src/engines/moc_polygonengine.cxx --- [ 27%] Generating moc_polygonengine.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_polygonengine.cxx_parameters --- libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake Scanning dependencies of target polygonengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build --- libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o --- [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/polygonengine.cpp --- libavogadro/src/engines/CMakeFiles/dipoleengine.dir/all --- --- lib/dipoleengine.so --- [ 27%] Linking CXX shared module ../../../lib/dipoleengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/all --- --- lib/cartoonengine.so --- [ 27%] Linking CXX shared module ../../../lib/cartoonengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/engines/CMakeFiles/dipoleengine.dir/all --- [ 27%] Built target dipoleengine --- libavogadro/src/engines/CMakeFiles/qtaimengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend --- libavogadro/src/engines/moc_qtaimengine.cxx --- --- libavogadro/src/engines/CMakeFiles/cartoonengine.dir/all --- [ 27%] Built target cartoonengine --- libavogadro/src/engines/CMakeFiles/qtaimengine.dir/all --- [ 27%] Generating moc_qtaimengine.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_qtaimengine.cxx_parameters --- libavogadro/src/engines/CMakeFiles/simplewireengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend --- libavogadro/src/engines/moc_simplewireengine.cxx --- [ 28%] Generating moc_simplewireengine.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_simplewireengine.cxx_parameters --- libavogadro/src/engines/CMakeFiles/hbondengine.dir/all --- --- lib/hbondengine.so --- [ 28%] Linking CXX shared module ../../../lib/hbondengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 --- libavogadro/src/engines/CMakeFiles/qtaimengine.dir/all --- --- libavogadro/src/engines/ui_qtaimsettingswidget.h --- [ 29%] Generating ui_qtaimsettingswidget.h --- libavogadro/src/engines/CMakeFiles/hbondengine.dir/all --- /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/engines/CMakeFiles/qtaimengine.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ui_qtaimsettingswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/qtaimsettingswidget.ui --- libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --- libavogadro/src/engines/CMakeFiles/simplewireengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --- libavogadro/src/engines/CMakeFiles/hbondengine.dir/all --- [ 29%] Built target hbondengine --- libavogadro/src/engines/CMakeFiles/ribbonengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend --- libavogadro/src/engines/CMakeFiles/qtaimengine.dir/all --- Scanning dependencies of target qtaimengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build --- libavogadro/src/engines/CMakeFiles/ribbonengine.dir/all --- --- libavogadro/src/engines/moc_ribbonengine.cxx --- --- libavogadro/src/engines/CMakeFiles/qtaimengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o --- --- libavogadro/src/engines/CMakeFiles/ribbonengine.dir/all --- [ 29%] Generating moc_ribbonengine.cxx --- libavogadro/src/engines/CMakeFiles/simplewireengine.dir/all --- Scanning dependencies of target simplewireengine --- libavogadro/src/engines/CMakeFiles/ribbonengine.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_ribbonengine.cxx_parameters --- libavogadro/src/engines/CMakeFiles/simplewireengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build --- libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o --- [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o --- libavogadro/src/engines/CMakeFiles/qtaimengine.dir/all --- [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/qtaimengine.cpp --- libavogadro/src/engines/CMakeFiles/simplewireengine.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/simplewireengine.cpp --- libavogadro/src/engines/CMakeFiles/ribbonengine.dir/all --- --- libavogadro/src/engines/ui_ribbonsettingswidget.h --- [ 29%] Generating ui_ribbonsettingswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ui_ribbonsettingswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ribbonsettingswidget.ui --- libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake Scanning dependencies of target ribbonengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build --- libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o --- [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ribbonengine.cpp --- libavogadro/src/engines/CMakeFiles/polygonengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o --- [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_polygonengine.cxx --- libavogadro/src/engines/CMakeFiles/wireengine.dir/all --- --- lib/wireengine.so --- [ 29%] Linking CXX shared module ../../../lib/wireengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 30%] Built target wireengine --- libavogadro/src/engines/CMakeFiles/surfaceengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend --- libavogadro/src/engines/moc_surfaceengine.cxx --- [ 30%] Generating moc_surfaceengine.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_surfaceengine.cxx_parameters --- libavogadro/src/engines/ui_surfacesettingswidget.h --- [ 30%] Generating ui_surfacesettingswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ui_surfacesettingswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/surfacesettingswidget.ui --- libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --- libavogadro/src/engines/CMakeFiles/simplewireengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o --- [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_simplewireengine.cxx --- libavogadro/src/engines/CMakeFiles/surfaceengine.dir/all --- Scanning dependencies of target surfaceengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build --- libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o --- [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/surfaceengine.cpp --- libavogadro/src/engines/CMakeFiles/polygonengine.dir/all --- --- lib/polygonengine.so --- [ 30%] Linking CXX shared module ../../../lib/polygonengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 30%] Built target polygonengine --- libavogadro/src/engines/CMakeFiles/labelengine.dir/all --- /usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend --- libavogadro/src/engines/moc_labelengine.cxx --- [ 31%] Generating moc_labelengine.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_labelengine.cxx_parameters --- libavogadro/src/engines/ui_labelsettingswidget.h --- [ 31%] Generating ui_labelsettingswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/ui_labelsettingswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/labelsettingswidget.ui --- libavogadro/src/engines/CMakeFiles/labelengine.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --- libavogadro/src/engines/CMakeFiles/simplewireengine.dir/all --- --- lib/simplewireengine.so --- [ 31%] Linking CXX shared module ../../../lib/simplewireengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 31%] Built target simplewireengine --- libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/all --- /usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend --- libavogadro/src/tools/moc_selectrotatetool.cxx --- [ 31%] Generating moc_selectrotatetool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters --- libavogadro/src/engines/CMakeFiles/labelengine.dir/all --- Scanning dependencies of target labelengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build --- libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o --- [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/labelengine.cpp --- libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/all --- --- libavogadro/src/tools/qrc_selectrotatetool.cxx --- [ 31%] Generating qrc_selectrotatetool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/rcc -name selectrotatetool -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_selectrotatetool.cxx /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/selectrotatetool.qrc --- libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake Scanning dependencies of target selectrotatetool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build --- libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o --- [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/selectrotatetool.cpp --- libavogadro/src/engines/CMakeFiles/ribbonengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o --- [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_ribbonengine.cxx --- libavogadro/src/engines/CMakeFiles/qtaimengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o --- [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_qtaimengine.cxx --- libavogadro/src/engines/CMakeFiles/surfaceengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o --- [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_surfaceengine.cxx --- libavogadro/src/engines/CMakeFiles/ribbonengine.dir/all --- --- lib/ribbonengine.so --- [ 32%] Linking CXX shared module ../../../lib/ribbonengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 33%] Built target ribbonengine --- libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/all --- /usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend --- libavogadro/src/tools/moc_bondcentrictool.cxx --- [ 33%] Generating moc_bondcentrictool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_bondcentrictool.cxx_parameters --- libavogadro/src/tools/moc_skeletontree.cxx --- [ 34%] Generating moc_skeletontree.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_skeletontree.cxx_parameters --- libavogadro/src/tools/qrc_bondcentrictool.cxx --- [ 34%] Generating qrc_bondcentrictool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/rcc -name bondcentrictool -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_bondcentrictool.cxx /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/bondcentrictool.qrc --- libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake Scanning dependencies of target bondcentrictool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build --- libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o --- [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/bondcentrictool.cpp --- libavogadro/src/engines/CMakeFiles/qtaimengine.dir/all --- --- lib/qtaimengine.so --- [ 34%] Linking CXX shared module ../../../lib/qtaimengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 34%] Built target qtaimengine --- libavogadro/src/tools/CMakeFiles/autorotatetool.dir/all --- /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend --- libavogadro/src/tools/moc_autorotatetool.cxx --- [ 34%] Generating moc_autorotatetool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_autorotatetool.cxx_parameters --- libavogadro/src/engines/CMakeFiles/labelengine.dir/all --- --- libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o --- --- libavogadro/src/engines/CMakeFiles/surfaceengine.dir/all --- --- lib/surfaceengine.so --- --- libavogadro/src/engines/CMakeFiles/labelengine.dir/all --- [ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/moc_labelengine.cxx --- libavogadro/src/engines/CMakeFiles/surfaceengine.dir/all --- [ 34%] Linking CXX shared module ../../../lib/surfaceengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/tools/CMakeFiles/autorotatetool.dir/all --- --- libavogadro/src/tools/qrc_autorotatetool.cxx --- [ 34%] Generating qrc_autorotatetool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/rcc -name autorotatetool -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_autorotatetool.cxx /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/autorotatetool.qrc --- libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --- libavogadro/src/engines/CMakeFiles/surfaceengine.dir/all --- [ 34%] Built target surfaceengine --- libavogadro/src/tools/CMakeFiles/drawtool.dir/all --- /usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend --- libavogadro/src/tools/moc_drawtool.cxx --- [ 34%] Generating moc_drawtool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_drawtool.cxx_parameters --- libavogadro/src/tools/CMakeFiles/autorotatetool.dir/all --- Scanning dependencies of target autorotatetool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build --- libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o --- [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o --- libavogadro/src/tools/CMakeFiles/drawtool.dir/all --- --- libavogadro/src/tools/qrc_drawtool.cxx --- --- libavogadro/src/tools/CMakeFiles/autorotatetool.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/autorotatetool.cpp --- libavogadro/src/tools/CMakeFiles/drawtool.dir/all --- [ 34%] Generating qrc_drawtool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/rcc -name drawtool -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_drawtool.cxx /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/drawtool.qrc --- libavogadro/src/tools/CMakeFiles/drawtool.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake Scanning dependencies of target drawtool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build --- libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o --- [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/drawtool.cpp --- libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/all --- --- libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o --- [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_selectrotatetool.cxx --- libavogadro/src/engines/CMakeFiles/labelengine.dir/all --- --- lib/labelengine.so --- [ 34%] Linking CXX shared module ../../../lib/labelengine.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/usr/local/lib -L/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/engines/..:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 34%] Built target labelengine --- libavogadro/src/tools/CMakeFiles/autorotatetool.dir/all --- --- libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o --- [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_autorotatetool.cxx --- libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o --- [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_autorotatetool.cxx --- libavogadro/src/tools/CMakeFiles/manipulatetool.dir/all --- /usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend --- libavogadro/src/tools/moc_manipulatetool.cxx --- [ 34%] Generating moc_manipulatetool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_manipulatetool.cxx_parameters --- libavogadro/src/tools/ui_manipulatesettingswidget.h --- [ 34%] Generating ui_manipulatesettingswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/ui_manipulatesettingswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/manipulatesettingswidget.ui --- libavogadro/src/tools/qrc_manipulatetool.cxx --- [ 34%] Generating qrc_manipulatetool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/rcc -name manipulatetool -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_manipulatetool.cxx /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/manipulatetool.qrc --- libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake Scanning dependencies of target manipulatetool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build --- libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o --- [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/eyecandy.cpp --- libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/all --- --- libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o --- [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_selectrotatetool.cxx --- lib/selectrotatetool.so --- [ 35%] Linking CXX shared module ../../../lib/selectrotatetool.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 35%] Built target selectrotatetool --- libavogadro/src/tools/CMakeFiles/autoopttool.dir/all --- /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend --- libavogadro/src/tools/moc_autoopttool.cxx --- [ 35%] Generating moc_autoopttool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_autoopttool.cxx_parameters --- libavogadro/src/tools/qrc_autoopttool.cxx --- [ 35%] Generating qrc_autoopttool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/rcc -name autoopttool -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_autoopttool.cxx /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/autoopttool.qrc --- libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake Scanning dependencies of target autoopttool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build --- libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o --- [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/autoopttool.cpp --- libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/all --- --- libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o --- [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/skeletontree.cpp --- libavogadro/src/tools/CMakeFiles/autorotatetool.dir/all --- --- lib/autorotatetool.so --- [ 37%] Linking CXX shared module ../../../lib/autorotatetool.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 37%] Built target autorotatetool --- libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/all --- /usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend --- libavogadro/src/tools/moc_clickmeasuretool.cxx --- [ 37%] Generating moc_clickmeasuretool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters --- libavogadro/src/tools/qrc_clickmeasuretool.cxx --- [ 37%] Generating qrc_clickmeasuretool.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/rcc -name clickmeasuretool -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_clickmeasuretool.cxx /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/clickmeasuretool.qrc --- libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake Scanning dependencies of target clickmeasuretool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build --- libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o --- [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/clickmeasuretool.cpp --- libavogadro/src/tools/CMakeFiles/drawtool.dir/all --- --- libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o --- [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/drawcommand.cpp --- libavogadro/src/tools/CMakeFiles/manipulatetool.dir/all --- --- libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o --- [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moveatomcommand.cpp --- 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/usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_bondcentrictool.cxx --- libavogadro/src/tools/CMakeFiles/manipulatetool.dir/all --- --- libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o --- [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/manipulatetool.cpp --- libavogadro/src/tools/CMakeFiles/autoopttool.dir/all --- --- libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o --- [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_autoopttool.cxx --- libavogadro/src/tools/CMakeFiles/drawtool.dir/all --- --- libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o --- [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_drawtool.cxx --- libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/all --- --- libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o --- [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON 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-I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_drawtool.cxx --- lib/drawtool.so --- [ 37%] Linking CXX shared module ../../../lib/drawtool.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/all --- --- libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o --- [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN 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/usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake Scanning dependencies of target aligntool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build --- libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o --- [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include 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-idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_clickmeasuretool.cxx --- lib/clickmeasuretool.so --- [ 39%] Linking CXX shared module ../../../lib/clickmeasuretool.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 39%] Built target clickmeasuretool --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend --- libavogadro/src/extensions/moc_insertfragmentextension.cxx --- [ 39%] Generating moc_insertfragmentextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters --- 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-fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_autoopttool.cxx --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- [ 39%] Generating moc_sortfiltertreeproxymodel.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx_parameters --- libavogadro/src/extensions/ui_insertfragmentdialog.h --- --- libavogadro/src/tools/CMakeFiles/manipulatetool.dir/all --- --- libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o --- --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- [ 39%] Generating ui_insertfragmentdialog.h --- 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-fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_manipulatetool.cxx --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/ui_insertfragmentdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/insertfragmentdialog.ui --- libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/all --- --- lib/bondcentrictool.so --- --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --- libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/all --- [ 39%] Linking CXX shared module ../../../lib/bondcentrictool.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/tools/CMakeFiles/autoopttool.dir/all --- --- lib/autoopttool.so --- [ 39%] Linking CXX shared module ../../../lib/autoopttool.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/all --- [ 39%] Built target bondcentrictool --- libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend --- libavogadro/src/extensions/moc_insertdnaextension.cxx --- [ 39%] Generating moc_insertdnaextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_insertdnaextension.cxx_parameters --- libavogadro/src/tools/CMakeFiles/autoopttool.dir/all --- [ 39%] Built target autoopttool --- libavogadro/src/extensions/CMakeFiles/selectextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend --- libavogadro/src/extensions/moc_selectextension.cxx --- [ 39%] Generating moc_selectextension.cxx --- libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/all --- --- libavogadro/src/extensions/ui_insertdnadialog.h --- --- libavogadro/src/extensions/CMakeFiles/selectextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_selectextension.cxx_parameters --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- Scanning dependencies of target insertfragmentextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o --- [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/insertcommand.cpp --- libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/all --- [ 40%] Generating ui_insertdnadialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/ui_insertdnadialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/insertdnadialog.ui --- libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --- libavogadro/src/extensions/CMakeFiles/selectextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --- libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/all --- Scanning dependencies of target insertdnaextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build --- libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o --- [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/insertcommand.cpp --- libavogadro/src/extensions/CMakeFiles/selectextension.dir/all --- Scanning dependencies of target selectextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build --- libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o --- [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/selectextension.cpp --- libavogadro/src/tools/CMakeFiles/manipulatetool.dir/all --- --- libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o --- [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_manipulatetool.cxx --- lib/manipulatetool.so --- [ 40%] Linking CXX shared module ../../../lib/manipulatetool.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 40%] Built target manipulatetool --- libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend --- libavogadro/src/extensions/moc_cartesianextension.cxx --- [ 40%] Generating moc_cartesianextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_cartesianextension.cxx_parameters --- libavogadro/src/extensions/ui_cartesianeditor.h --- [ 40%] Generating ui_cartesianeditor.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/ui_cartesianeditor.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/cartesianeditor.ui --- libavogadro/src/extensions/qrc_cartesianextension.cxx --- [ 40%] Generating qrc_cartesianextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/rcc -name cartesianextension -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qrc_cartesianextension.cxx /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/cartesianextension.qrc --- libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake Scanning dependencies of target cartesianextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build --- libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o --- [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/cartesianextension.cpp --- libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o --- [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/insertdnaextension.cpp --- libavogadro/src/tools/CMakeFiles/aligntool.dir/all --- --- libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o --- [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/moc_aligntool.cxx --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o --- [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp --- libavogadro/src/extensions/CMakeFiles/selectextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o --- [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_selectextension.cxx --- libavogadro/src/tools/CMakeFiles/aligntool.dir/all --- --- libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o --- [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/qrc_aligntool.cxx --- lib/aligntool.so --- [ 40%] Linking CXX shared module ../../../lib/aligntool.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 40%] Built target aligntool --- libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o --- --- libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/all --- --- libavogadro/src/extensions/moc_hydrogensextension.cxx --- --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/insertfragmentdialog.cpp --- libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/all --- [ 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&& /usr/local/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/all --- Scanning dependencies of target hydrogensextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build --- libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o --- --- libavogadro/src/extensions/CMakeFiles/selectextension.dir/all --- [ 41%] Built target selectextension --- libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/all --- [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o --- libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/hydrogensextension.cpp --- 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/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake Scanning dependencies of target gl2psextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build --- libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o --- [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2psextension.cpp --- libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o --- [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_cartesianextension.cxx --- libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o --- [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_insertdnaextension.cxx --- libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o --- [ 43%] Building C object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/cc -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps/gl2ps.c --- libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o --- [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_hydrogensextension.cxx --- libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/all --- --- lib/insertdnaextension.so --- [ 43%] Linking CXX shared module ../../../lib/insertdnaextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 43%] Built target insertdnaextension --- libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend --- libavogadro/src/extensions/moc_pythonterminal.cxx --- [ 44%] Generating moc_pythonterminal.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o --- [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/insertfragmentextension.cpp --- libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/all --- --- libavogadro/src/extensions/moc_highlighter.cxx --- [ 44%] Generating moc_highlighter.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_highlighter.cxx_parameters --- libavogadro/src/extensions/ui_pythonterminalwidget.h --- [ 44%] Generating ui_pythonterminalwidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/ui_pythonterminalwidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/pythonterminalwidget.ui --- libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake Scanning dependencies of target pythonterminal /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build --- libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o --- [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qrc_cartesianextension.cxx --- libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/all --- --- lib/hydrogensextension.so --- [ 46%] Linking CXX shared module ../../../lib/hydrogensextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/all --- --- libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o --- [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/pythonterminal.cpp --- libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/all --- [ 46%] Built target hydrogensextension --- libavogadro/src/extensions/CMakeFiles/propextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend --- libavogadro/src/extensions/__/tools/moc_skeletontree.cxx --- [ 46%] Generating __/tools/moc_skeletontree.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/__/tools && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters --- libavogadro/src/extensions/moc_propmodel.cxx --- [ 47%] Generating moc_propmodel.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 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libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build --- libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o --- [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/tools/skeletontree.cpp --- libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o --- [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_gl2psextension.cxx --- libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/all --- --- lib/cartesianextension.so --- [ 47%] Linking CXX shared module ../../../lib/cartesianextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 47%] Built target cartesianextension --- libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend --- libavogadro/src/extensions/moc_insertpeptideextension.cxx --- [ 47%] Generating moc_insertpeptideextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters --- libavogadro/src/extensions/ui_insertpeptidedialog.h --- [ 47%] Generating ui_insertpeptidedialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/ui_insertpeptidedialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/insertpeptidedialog.ui --- libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake Scanning dependencies of target insertpeptideextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build --- libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/insertcommand.cpp --- libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/all --- --- lib/gl2psextension.so --- [ 48%] Linking CXX shared module ../../../lib/gl2psextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gl2psextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/gl2psextension.so CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 48%] Built target gl2psextension --- libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend --- libavogadro/src/extensions/moc_h2methylextension.cxx --- [ 48%] Generating moc_h2methylextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_h2methylextension.cxx_parameters --- libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake Scanning dependencies of target h2methylextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build --- libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/h2methylextension.cpp --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_insertfragmentextension.cxx --- libavogadro/src/extensions/CMakeFiles/propextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/propmodel.cpp --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_insertfragmentdialog.cxx --- libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/insertpeptideextension.cpp --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx --- libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_h2methylextension.cxx --- libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/all --- --- lib/insertfragmentextension.so --- [ 48%] Linking CXX shared module ../../../lib/insertfragmentextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 48%] Built target insertfragmentextension --- libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend --- libavogadro/src/extensions/moc_invertchiralextension.cxx --- [ 48%] Generating moc_invertchiralextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_invertchiralextension.cxx_parameters --- libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake Scanning dependencies of target invertchiralextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build --- libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/invertchiralextension.cpp --- libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/all --- --- lib/h2methylextension.so --- [ 48%] Linking CXX shared module ../../../lib/h2methylextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 48%] Built target h2methylextension --- libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_insertpeptideextension.cxx --- libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/all --- --- libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/highlighter.cpp --- libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_invertchiralextension.cxx --- libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/all --- --- libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_pythonterminal.cxx --- libavogadro/src/extensions/CMakeFiles/propextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/propextension.dir/propextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/propextension.cpp --- libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/all --- --- lib/invertchiralextension.so --- [ 48%] Linking CXX shared module ../../../lib/invertchiralextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/extensions/CMakeFiles/propextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o --- --- libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/all --- [ 48%] Built target invertchiralextension --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend --- libavogadro/src/extensions/CMakeFiles/propextension.dir/all --- [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/all --- --- libavogadro/src/extensions/moc_forcefieldextension.cxx --- [ 48%] Generating moc_forcefieldextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters --- libavogadro/src/extensions/moc_forcefielddialog.cxx --- [ 48%] Generating moc_forcefielddialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters --- libavogadro/src/extensions/moc_constraintsdialog.cxx --- [ 48%] Generating moc_constraintsdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters --- libavogadro/src/extensions/moc_constraintsmodel.cxx --- [ 49%] Generating moc_constraintsmodel.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters --- libavogadro/src/extensions/moc_conformersearchdialog.cxx --- [ 49%] Generating moc_conformersearchdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_conformersearchdialog.cxx_parameters --- libavogadro/src/extensions/ui_forcefielddialog.h --- [ 49%] Generating ui_forcefielddialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/ui_forcefielddialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/forcefielddialog.ui --- libavogadro/src/extensions/ui_constraintsdialog.h --- [ 49%] Generating ui_constraintsdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/ui_constraintsdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/constraintsdialog.ui --- libavogadro/src/extensions/ui_conformersearchdialog.h --- [ 49%] Generating ui_conformersearchdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/ui_conformersearchdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/conformersearchdialog.ui --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake Scanning dependencies of target forcefieldextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o --- [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/constraintsmodel.cpp --- libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/all --- --- lib/insertpeptideextension.so --- [ 49%] Linking CXX shared module ../../../lib/insertpeptideextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 49%] Built target insertpeptideextension --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o --- [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/constraintsdialog.cpp --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o --- [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/conformersearchdialog.cpp --- libavogadro/src/extensions/CMakeFiles/propextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o --- [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_propmodel.cxx --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o --- [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/forcefielddialog.cpp --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o --- [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/forcefieldextension.cpp --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o --- [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_forcefieldextension.cxx --- libavogadro/src/extensions/CMakeFiles/propextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o --- [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_propextension.cxx --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o --- [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c 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-fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_constraintsmodel.cxx --- libavogadro/src/extensions/CMakeFiles/propextension.dir/all --- /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o 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-I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/molecularpropextension.cpp --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o --- [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB 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CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_conformersearchdialog.cxx --- libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o --- [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_networkfetchextension.cxx --- libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o --- [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_molecularpropextension.cxx --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend --- libavogadro/src/extensions/moc_animationextension.cxx --- [ 51%] Generating moc_animationextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_animationextension.cxx_parameters --- libavogadro/src/extensions/moc_animationdialog.cxx --- [ 52%] Generating moc_animationdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_animationdialog.cxx_parameters --- libavogadro/src/extensions/ui_animationdialog.h --- [ 52%] Generating ui_animationdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/ui_animationdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/animationdialog.ui --- libavogadro/src/extensions/qrc_animationextension.cxx --- [ 52%] Generating qrc_animationextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/rcc -name animationextension -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qrc_animationextension.cxx /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/animationextension.qrc --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake Scanning dependencies of target animationextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o --- [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/povpainter.cpp --- libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/all --- --- lib/networkfetchextension.so --- [ 52%] Linking CXX shared module ../../../lib/networkfetchextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/qt4/libQtNetwork.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 52%] Built target networkfetchextension --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend --- libavogadro/src/extensions/moc_povrayextension.cxx --- [ 52%] Generating moc_povrayextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_povrayextension.cxx_parameters --- libavogadro/src/extensions/moc_povraydialog.cxx --- [ 52%] Generating moc_povraydialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_povraydialog.cxx_parameters --- libavogadro/src/extensions/ui_povraydialog.h --- [ 53%] Generating ui_povraydialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/ui_povraydialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/povraydialog.ui --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o --- [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/trajvideomaker.cpp --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/all --- Scanning dependencies of target povrayextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o --- [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/povpainter.cpp --- libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/all --- --- lib/forcefieldextension.so --- [ 53%] Linking CXX shared module ../../../lib/forcefieldextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 53%] Built target forcefieldextension --- libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend --- libavogadro/src/extensions/moc_fileimportextension.cxx --- [ 53%] Generating moc_fileimportextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_fileimportextension.cxx_parameters --- libavogadro/src/extensions/ui_fileimportdialog.h --- [ 53%] Generating ui_fileimportdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/ui_fileimportdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/fileimportdialog.ui --- libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --- libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/all --- --- lib/molecularpropextension.so --- [ 53%] Linking CXX shared module ../../../lib/molecularpropextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/qt4/libQtNetwork.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/all --- Scanning dependencies of target fileimportextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build --- libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o --- [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/fileimportextension.cpp --- libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/all --- [ 53%] Built target molecularpropextension --- libavogadro/src/extensions/CMakeFiles/supercellextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend --- libavogadro/src/extensions/moc_supercellextension.cxx --- [ 53%] Generating moc_supercellextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_supercellextension.cxx_parameters --- libavogadro/src/extensions/moc_supercelldialog.cxx --- [ 53%] Generating moc_supercelldialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_supercelldialog.cxx_parameters --- libavogadro/src/extensions/ui_supercelldialog.h --- [ 53%] Generating ui_supercelldialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/ui_supercelldialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/supercelldialog.ui --- libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake Scanning dependencies of target supercellextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build --- libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o --- [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/supercelldialog.cpp --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o --- [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/animationdialog.cpp --- libavogadro/src/extensions/CMakeFiles/supercellextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o --- [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/supercellextension.dir/supercellextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/supercellextension.cpp --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o --- [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/animationextension.cpp --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o --- [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/povraydialog.cpp --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o --- [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_animationextension.cxx --- libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o --- [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_fileimportextension.cxx --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o --- [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_animationdialog.cxx --- libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/all --- --- lib/fileimportextension.so --- [ 55%] Linking CXX shared module ../../../lib/fileimportextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 55%] Built target fileimportextension --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend --- libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx --- [ 55%] Generating moc_crystallographyextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx_parameters --- libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx --- [ 55%] Generating moc_crystalpastedialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx_parameters --- libavogadro/src/extensions/CMakeFiles/supercellextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o --- [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_supercellextension.cxx --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx --- [ 55%] Generating ui/moc_ceabstractdockwidget.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx_parameters --- libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx --- [ 55%] Generating ui/moc_ceabstracteditor.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx_parameters --- libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx --- [ 55%] Generating ui/moc_cecoordinateeditor.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx_parameters --- libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx --- [ 55%] Generating ui/moc_cematrixeditor.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx_parameters --- libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx --- [ 55%] Generating ui/moc_ceparametereditor.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx_parameters --- libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx --- [ 56%] Generating ui/moc_ceslabbuilder.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx_parameters --- libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx --- --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- [ 56%] Generating ui/moc_cetranslatewidget.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx_parameters --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/all --- [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/povrayextension.cpp --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx --- [ 56%] Generating ui/moc_ceviewoptionswidget.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx_parameters --- libavogadro/src/extensions/crystallography/ui_crystalpastedialog.h --- [ 56%] Generating ui_crystalpastedialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui_crystalpastedialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/crystalpastedialog.ui --- libavogadro/src/extensions/crystallography/ui_cecoordinateeditor.h --- [ 56%] Generating ui_cecoordinateeditor.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui_cecoordinateeditor.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.ui --- libavogadro/src/extensions/crystallography/ui_cematrixeditor.h --- [ 56%] Generating ui_cematrixeditor.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui_cematrixeditor.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cematrixeditor.ui --- libavogadro/src/extensions/crystallography/ui_ceparametereditor.h --- [ 56%] Generating ui_ceparametereditor.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui_ceparametereditor.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceparametereditor.ui --- libavogadro/src/extensions/crystallography/ui_ceslabbuilder.h --- [ 56%] Generating ui_ceslabbuilder.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui_ceslabbuilder.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.ui --- libavogadro/src/extensions/crystallography/ui_cetranslatewidget.h --- [ 56%] Generating ui_cetranslatewidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui_cetranslatewidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.ui --- libavogadro/src/extensions/crystallography/ui_ceviewoptionswidget.h --- [ 57%] Generating ui_ceviewoptionswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui_ceviewoptionswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.ui --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o --- [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qrc_animationextension.cxx --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- Scanning dependencies of target crystallographyextension /usr/bin/make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build --- libavogadro/src/extensions/CMakeFiles/supercellextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o --- --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/avospglib.cpp.o --- --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/all --- [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o --- libavogadro/src/extensions/CMakeFiles/supercellextension.dir/all --- [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_povrayextension.cxx --- libavogadro/src/extensions/CMakeFiles/supercellextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_supercelldialog.cxx --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- [ 57%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/avospglib.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/avospglib.cpp --- libavogadro/src/extensions/CMakeFiles/animationextension.dir/all --- --- lib/animationextension.so --- [ 58%] Linking CXX shared module ../../../lib/animationextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 58%] Built target animationextension --- libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend --- libavogadro/src/extensions/spectra/moc_vibrationextension.cxx --- [ 58%] Generating moc_vibrationextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx_parameters --- libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx --- [ 58%] Generating moc_vibrationwidget.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx_parameters --- libavogadro/src/extensions/spectra/ui_vibrationwidget.h --- [ 58%] Generating ui_vibrationwidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/ui_vibrationwidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/vibrationwidget.ui --- libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake Scanning dependencies of target vibrationextension /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build --- libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o --- [ 58%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/vibrationextension.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o --- [ 58%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/vibrationwidget.cpp --- libavogadro/src/extensions/CMakeFiles/supercellextension.dir/all --- --- lib/supercellextension.so --- [ 58%] Linking CXX shared module ../../../lib/supercellextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 58%] Built target supercellextension --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o --- [ 58%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ceundo.cpp --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/all --- --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o --- [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/moc_povraydialog.cxx --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o --- [ 58%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o --- [ 58%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o --- [ 59%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx --- libavogadro/src/extensions/CMakeFiles/povrayextension.dir/all --- --- lib/povrayextension.so --- [ 59%] Linking CXX shared module ../../../lib/povrayextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 59%] Built target povrayextension --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend --- libavogadro/src/extensions/spectra/moc_spectraextension.cxx --- [ 60%] Generating moc_spectraextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_spectraextension.cxx_parameters --- libavogadro/src/extensions/spectra/moc_spectradialog.cxx --- --- libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- [ 60%] Generating moc_spectradialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_spectradialog.cxx_parameters --- libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/all --- [ 60%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/moc_spectratype.cxx --- [ 60%] Generating moc_spectratype.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_spectratype.cxx_parameters --- libavogadro/src/extensions/spectra/moc_abstract_ir.cxx --- [ 60%] Generating moc_abstract_ir.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx_parameters --- libavogadro/src/extensions/spectra/moc_ir.cxx --- [ 60%] Generating moc_ir.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_ir.cxx_parameters --- libavogadro/src/extensions/spectra/moc_nmr.cxx --- [ 60%] Generating moc_nmr.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_nmr.cxx_parameters --- libavogadro/src/extensions/spectra/moc_dos.cxx --- [ 60%] Generating moc_dos.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_dos.cxx_parameters --- libavogadro/src/extensions/spectra/moc_uv.cxx --- [ 60%] Generating moc_uv.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_uv.cxx_parameters --- libavogadro/src/extensions/spectra/moc_cd.cxx --- [ 60%] Generating moc_cd.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_cd.cxx_parameters --- libavogadro/src/extensions/spectra/moc_raman.cxx --- [ 61%] Generating moc_raman.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_raman.cxx_parameters --- libavogadro/src/extensions/spectra/ui_spectradialog.h --- [ 61%] Generating ui_spectradialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/ui_spectradialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.ui --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/ui_tab_ir_raman.h --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- [ 62%] Generating ui_tab_ir_raman.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/ui_tab_ir_raman.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/tab_ir_raman.ui --- libavogadro/src/extensions/spectra/ui_tab_nmr.h --- [ 62%] Generating ui_tab_nmr.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/ui_tab_nmr.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/tab_nmr.ui --- libavogadro/src/extensions/spectra/ui_tab_dos.h --- [ 62%] Generating ui_tab_dos.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/ui_tab_dos.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/tab_dos.ui --- libavogadro/src/extensions/spectra/ui_tab_uv.h --- [ 62%] Generating ui_tab_uv.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/ui_tab_uv.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/tab_uv.ui --- libavogadro/src/extensions/spectra/ui_tab_cd.h --- [ 62%] Generating ui_tab_cd.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/ui_tab_cd.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/tab_cd.ui --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake Scanning dependencies of target spectraextension /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectraextension.cpp.o --- [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectraextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectraextension.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o --- --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/all --- --- libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx --- [ 62%] Generating moc_surfaceextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx_parameters --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/all --- --- libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx --- [ 62%] Generating moc_surfacedialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx_parameters --- libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx --- [ 62%] Generating moc_vdwsurface.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters --- libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx --- [ 62%] Generating qtiocompressor/moc_qtiocompressor.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters --- libavogadro/src/extensions/surfaces/ui_surfacedialog.h --- [ 62%] Generating ui_surfacedialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/surfacedialog.ui --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake Scanning dependencies of target surfaceextension /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o --- [ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/vdwsurface.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/all --- --- lib/vibrationextension.so --- [ 63%] Linking CXX shared module ../../../../lib/vibrationextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../../lib/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -L/usr/local/lib ../../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 63%] Built target vibrationextension --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend --- libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx --- [ 63%] Generating moc_orbitalextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx_parameters --- libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx --- [ 63%] Generating moc_orbitalsettingsdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx_parameters --- libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx --- [ 63%] Generating moc_orbitaltablemodel.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx_parameters --- libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx --- [ 64%] Generating moc_orbitalwidget.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx_parameters --- libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx --- [ 64%] Generating moc_htmldelegate.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx_parameters --- libavogadro/src/extensions/surfaces/ui_orbitalwidget.h --- [ 64%] Generating ui_orbitalwidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalwidget.ui --- libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h --- [ 64%] Generating ui_orbitalsettingsdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.ui --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o --- [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectratype.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- Scanning dependencies of target orbitalextension /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o --- [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/vdwsurface.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o --- [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/cd.cpp --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o --- [ 65%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o --- [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o --- [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/dos.cpp.o --- [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/dos.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/dos.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/dos.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o --- [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/htmldelegate.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o --- [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/abstract_ir.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/all --- [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/surfacedialog.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o --- [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalextension.cpp --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o --- [ 66%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o --- [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && 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/usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/ir.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/ir.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o --- [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/raman.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/raman.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o --- [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/surfaceextension.cpp --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o --- [ 66%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB 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-fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/nmr.cpp.o --- [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/nmr.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/nmr.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/nmr.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o --- [ 66%] Building CXX object 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/usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o --- [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o --- [ 66%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o --- [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o --- [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing 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/usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/uv.cpp --- 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-I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/crystallographyextension.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o --- [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o --- [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalwidget.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o --- [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_spectraextension.cxx --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o --- [ 66%] Building CXX object 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/usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o --- [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o --- [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o --- [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o --- [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_spectradialog.cxx --- libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/all --- --- lib/surfaceextension.so --- [ 66%] Linking CXX shared module ../../../../lib/surfaceextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../../lib/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -L/usr/local/lib ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.1.1 -lz /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 66%] Built target surfaceextension --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend --- libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx --- [ 66%] Generating moc_swcntbuilderextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx_parameters --- libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx --- [ 67%] Generating moc_swcntbuilderwidget.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx_parameters --- libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx --- [ 67%] Generating moc_avotubegen.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx_parameters --- libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h --- [ 67%] Generating ui_swcntbuilderwidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake Scanning dependencies of target swcntbuilderextension /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o --- [ 67%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/insertcommand.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o --- [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o --- [ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_spectratype.cxx --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o --- [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o --- [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/all --- --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o --- [ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o --- [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_ir.cxx --- 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-I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o --- [ 68%] Building CXX object 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/usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o --- [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_nmr.cxx --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/all --- --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o --- [ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o --- [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o --- --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/moc_dos.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_dos.cxx --- libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/all --- [ 69%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx --- lib/orbitalextension.so --- [ 69%] Linking CXX shared module ../../../../lib/orbitalextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/surfaces && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../../lib/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -L/usr/local/lib ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.1.1 -lz /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 69%] Built target orbitalextension --- libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend --- libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx --- [ 69%] Generating moc_qtaimextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx_parameters --- libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake Scanning dependencies of target qtaimextension /usr/bin/make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build --- libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o --- [ 69%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimextension.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o --- [ 69%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/moc_uv.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_uv.cxx --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o --- [ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/all --- --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o --- [ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o --- [ 69%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/moc_cd.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_cd.cxx --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o --- [ 69%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra/moc_raman.cxx --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/all --- --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o --- [ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o --- [ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx --- libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/all --- --- libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o --- [ 69%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/all --- --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o --- [ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx --- libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/all --- --- lib/spectraextension.so --- [ 69%] Linking CXX shared module ../../../../lib/spectraextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/spectra && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../../lib/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -L/usr/local/lib ../../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 69%] Built target spectraextension --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend --- libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx --- [ 69%] Generating moc_inputfileextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx_parameters --- libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx --- [ 69%] Generating moc_inputdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters --- libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx --- [ 69%] Generating moc_abinitinputdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx_parameters --- libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx --- [ 69%] Generating moc_daltoninputdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx_parameters --- libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx --- [ 69%] Generating moc_gamessukinputdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx_parameters --- libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx --- [ 69%] Generating moc_gaussianinputdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx_parameters --- libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx --- [ 69%] Generating moc_molproinputdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx_parameters --- libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx --- --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/all --- --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o --- [ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- [ 69%] Generating moc_mopacinputdialog.cxx --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx_parameters --- libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx --- [ 70%] Generating moc_nwcheminputdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx_parameters --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o --- [ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx --- [ 70%] Generating moc_psi4inputdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx_parameters --- libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx --- [ 70%] Generating moc_qcheminputdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx_parameters --- libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx --- --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/all --- --- lib/swcntbuilderextension.so --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- [ 70%] Generating moc_teracheminputdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx_parameters --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/all --- [ 71%] Linking CXX shared module ../../../../lib/swcntbuilderextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../../lib/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -L/usr/local/lib ../../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so tubegen/libtubegen.a -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx --- --- libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/all --- [ 71%] Built target swcntbuilderextension --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- [ 71%] Generating moc_lammpsinputdialog.cxx --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx_parameters --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend --- libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx --- [ 71%] Generating moc_gamessextension.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx_parameters --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/ui_abinitinputdialog.h --- [ 71%] Generating ui_abinitinputdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/ui_abinitinputdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/abinitinputdialog.ui --- libavogadro/src/extensions/quantuminput/ui_gaussianinputdialog.h --- [ 71%] Generating ui_gaussianinputdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/ui_gaussianinputdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gaussianinputdialog.ui --- libavogadro/src/extensions/quantuminput/ui_daltoninputdialog.h --- [ 71%] Generating ui_daltoninputdialog.h --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- --- libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/ui_daltoninputdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/daltoninputdialog.ui --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- [ 72%] Generating moc_gamessinputdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx_parameters --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- [ 72%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/ui_gamessukinputdialog.h --- [ 72%] Generating ui_gamessukinputdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/ui_gamessukinputdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessukinputdialog.ui --- libavogadro/src/extensions/quantuminput/ui_molproinputdialog.h --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- --- libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- [ 73%] Generating ui_molproinputdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/ui_molproinputdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/molproinputdialog.ui --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- [ 73%] Generating moc_gamesshighlighter.cxx --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/ui_mopacinputdialog.h --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx_parameters --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- [ 73%] Generating ui_mopacinputdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/ui_mopacinputdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/mopacinputdialog.ui --- libavogadro/src/extensions/quantuminput/ui_nwcheminputdialog.h --- [ 73%] Generating ui_nwcheminputdialog.h --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- --- libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/ui_nwcheminputdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/nwcheminputdialog.ui --- libavogadro/src/extensions/quantuminput/ui_psi4inputdialog.h --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- [ 73%] Generating moc_gamessefpmatchdialog.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx_parameters --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- [ 73%] Generating ui_psi4inputdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/ui_psi4inputdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/psi4inputdialog.ui --- libavogadro/src/extensions/quantuminput/ui_qcheminputdialog.h --- [ 73%] Generating ui_qcheminputdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/ui_qcheminputdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/qcheminputdialog.ui --- libavogadro/src/extensions/quantuminput/ui_teracheminputdialog.h --- [ 73%] Generating ui_teracheminputdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/ui_teracheminputdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/teracheminputdialog.ui --- libavogadro/src/extensions/quantuminput/ui_lammpsinputdialog.h --- [ 73%] Generating ui_lammpsinputdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/ui_lammpsinputdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/lammpsinputdialog.ui --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- --- libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h --- [ 73%] Generating ui_gamessinputdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui --- libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h --- [ 73%] Generating ui_gamessefpmatchdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake Scanning dependencies of target gamessextension /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- Scanning dependencies of target inputfileextension --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- [ 73%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o --- [ 73%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.cpp --- libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/all --- --- libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o --- [ 73%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o --- [ 73%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx --- libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/all --- --- libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o --- [ 74%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- --- 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-I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o --- [ 75%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o --- [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp --- libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all --- --- lib/crystallographyextension.so --- [ 76%] Linking CXX shared module ../../../../lib/crystallographyextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/crystallography && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../../lib/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -L/usr/local/lib ../../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so spglib/libspglib.a -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 76%] Built target crystallographyextension --- libavogadro/src/colors/CMakeFiles/residuecolor.dir/all --- /usr/bin/make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend --- libavogadro/src/colors/moc_residuecolor.cxx --- [ 76%] Generating moc_residuecolor.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_residuecolor.cxx_parameters --- libavogadro/src/colors/ui_residuecolorsettings.h --- [ 76%] Generating ui_residuecolorsettings.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/ui_residuecolorsettings.h /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/residuecolorsettings.ui --- libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake Scanning dependencies of target residuecolor /usr/bin/make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build --- libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o --- [ 77%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/residuecolor.dir/residuecolor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/residuecolor.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o --- [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp --- libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/all --- --- libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o --- [ 78%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimcubature.cpp --- libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o --- [ 78%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx --- libavogadro/src/colors/CMakeFiles/residuecolor.dir/all --- --- libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o --- [ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_residuecolor.cxx --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o --- [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp --- libavogadro/src/colors/CMakeFiles/residuecolor.dir/all --- --- lib/residuecolor.so --- [ 78%] Linking CXX shared module ../../../lib/residuecolor.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 78%] Built target residuecolor --- libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/all --- /usr/bin/make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend --- libavogadro/src/colors/moc_atomindexcolor.cxx --- [ 78%] Generating moc_atomindexcolor.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_atomindexcolor.cxx_parameters --- libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake Scanning dependencies of target atomindexcolor /usr/bin/make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build --- libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o --- [ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/atomindexcolor.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o --- [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessextension.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o --- [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp --- libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/all --- --- libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o --- [ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_atomindexcolor.cxx --- libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/all --- --- lib/qtaimextension.so --- [ 78%] Linking CXX shared module ../../../../lib/qtaimextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/qtaim && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/qtaimextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../../lib/qtaimextension.so CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -L/usr/local/lib ../../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 78%] Built target qtaimextension --- libavogadro/src/colors/CMakeFiles/smartscolor.dir/all --- /usr/bin/make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend --- libavogadro/src/colors/moc_smartscolor.cxx --- [ 78%] Generating moc_smartscolor.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_smartscolor.cxx_parameters --- libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake Scanning dependencies of target smartscolor /usr/bin/make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build --- libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o --- [ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/smartscolor.dir/smartscolor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/smartscolor.cpp --- libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/all --- --- lib/atomindexcolor.so --- [ 78%] Linking CXX shared module ../../../lib/atomindexcolor.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 78%] Built target atomindexcolor --- libavogadro/src/colors/CMakeFiles/chargecolor.dir/all --- /usr/bin/make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend --- libavogadro/src/colors/moc_chargecolor.cxx --- [ 79%] Generating moc_chargecolor.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_chargecolor.cxx_parameters --- libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake Scanning dependencies of target chargecolor /usr/bin/make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build --- libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o --- [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/chargecolor.dir/chargecolor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/chargecolor.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o --- [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp --- libavogadro/src/colors/CMakeFiles/smartscolor.dir/all --- --- libavogadro/src/colors/CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o --- [ 80%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_smartscolor.cxx --- libavogadro/src/colors/CMakeFiles/chargecolor.dir/all --- --- libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o --- [ 80%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_chargecolor.cxx --- libavogadro/src/colors/CMakeFiles/smartscolor.dir/all --- --- lib/smartscolor.so --- [ 80%] Linking CXX shared module ../../../lib/smartscolor.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/smartscolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/smartscolor.so CMakeFiles/smartscolor.dir/smartscolor.cpp.o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/colors/CMakeFiles/chargecolor.dir/all --- --- lib/chargecolor.so --- [ 80%] Linking CXX shared module ../../../lib/chargecolor.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 --- libavogadro/src/colors/CMakeFiles/smartscolor.dir/all --- [ 80%] Built target smartscolor --- libavogadro/src/colors/CMakeFiles/distancecolor.dir/all --- /usr/bin/make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend --- libavogadro/src/colors/CMakeFiles/chargecolor.dir/all --- /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 --- libavogadro/src/colors/CMakeFiles/distancecolor.dir/all --- --- libavogadro/src/colors/moc_distancecolor.cxx --- [ 80%] Generating moc_distancecolor.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_distancecolor.cxx_parameters --- libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --- libavogadro/src/colors/CMakeFiles/chargecolor.dir/all --- [ 80%] Built target chargecolor --- libavogadro/src/colors/CMakeFiles/customcolor.dir/all --- /usr/bin/make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend --- libavogadro/src/colors/moc_customcolor.cxx --- [ 80%] Generating moc_customcolor.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_customcolor.cxx_parameters --- libavogadro/src/colors/CMakeFiles/distancecolor.dir/all --- Scanning dependencies of target distancecolor /usr/bin/make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build --- libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o --- --- libavogadro/src/colors/CMakeFiles/customcolor.dir/all --- --- libavogadro/src/colors/CMakeFiles/customcolor.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --- libavogadro/src/colors/CMakeFiles/distancecolor.dir/all --- [ 80%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/distancecolor.dir/distancecolor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/distancecolor.cpp --- libavogadro/src/colors/CMakeFiles/customcolor.dir/all --- Scanning dependencies of target customcolor /usr/bin/make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build --- libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o --- [ 80%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/customcolor.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o --- [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp --- libavogadro/src/colors/CMakeFiles/customcolor.dir/all --- --- libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o --- [ 80%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_customcolor.cxx --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o --- [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp --- libavogadro/src/colors/CMakeFiles/distancecolor.dir/all --- --- libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o --- [ 81%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors/moc_distancecolor.cxx --- libavogadro/src/colors/CMakeFiles/customcolor.dir/all --- --- lib/customcolor.so --- [ 81%] Linking CXX shared module ../../../lib/customcolor.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 82%] Built target customcolor --- libavogadro/src/python/CMakeFiles/python-module.dir/all --- /usr/bin/make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend --- libavogadro/src/python/moleculelist.moc --- [ 83%] Generating moleculelist.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python/moleculelist.moc_parameters --- libavogadro/src/python/CMakeFiles/python-module.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --- libavogadro/src/colors/CMakeFiles/distancecolor.dir/all --- --- lib/distancecolor.so --- [ 83%] Linking CXX shared module ../../../lib/distancecolor.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/colors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../lib/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -L/usr/local/lib ../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 83%] Built target distancecolor --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- /usr/bin/make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend --- avogadro/src/aboutdialog.moc --- [ 83%] Generating aboutdialog.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/aboutdialog.moc_parameters --- avogadro/src/addenginedialog.moc --- [ 83%] Generating addenginedialog.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/addenginedialog.moc_parameters --- avogadro/src/application.moc --- [ 83%] Generating application.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/application.moc_parameters --- avogadro/src/detachedview.moc --- [ 83%] Generating detachedview.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/detachedview.moc_parameters --- avogadro/src/enginecolorswidget.moc --- [ 83%] Generating enginecolorswidget.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/enginecolorswidget.moc_parameters --- avogadro/src/engineitemdelegate.moc --- [ 83%] Generating engineitemdelegate.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/engineitemdelegate.moc_parameters --- avogadro/src/engineitemmodel.moc --- [ 84%] Generating engineitemmodel.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/engineitemmodel.moc_parameters --- avogadro/src/enginelistview.moc --- [ 84%] Generating enginelistview.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/enginelistview.moc_parameters --- avogadro/src/engineprimitiveswidget.moc --- [ 84%] Generating engineprimitiveswidget.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/engineprimitiveswidget.moc_parameters --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o --- --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- --- avogadro/src/engineviewwidget.moc --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- [ 84%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- [ 84%] Generating engineviewwidget.moc --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/engineviewwidget.moc_parameters --- avogadro/src/flattabwidget.moc --- [ 84%] Generating flattabwidget.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/flattabwidget.moc_parameters --- avogadro/src/glgraphicsview.moc --- [ 84%] Generating glgraphicsview.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/glgraphicsview.moc_parameters --- avogadro/src/importdialog.moc --- [ 84%] Generating importdialog.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/importdialog.moc_parameters --- avogadro/src/mainwindow.moc --- [ 84%] Generating mainwindow.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/mainwindow.moc_parameters --- avogadro/src/pluginitemmodel.moc --- [ 84%] Generating pluginitemmodel.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/pluginitemmodel.moc_parameters --- avogadro/src/pluginlistview.moc --- [ 84%] Generating pluginlistview.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/pluginlistview.moc_parameters --- avogadro/src/pluginsettings.moc --- [ 85%] Generating pluginsettings.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/pluginsettings.moc_parameters --- avogadro/src/primitiveitemmodel.moc --- [ 85%] Generating primitiveitemmodel.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/primitiveitemmodel.moc_parameters --- avogadro/src/primitivetreeview.moc --- [ 85%] Generating primitivetreeview.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/primitivetreeview.moc_parameters --- avogadro/src/projecttreeeditor.moc --- [ 85%] Generating projecttreeeditor.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/projecttreeeditor.moc_parameters --- avogadro/src/projecttreemodel.moc --- [ 85%] Generating projecttreemodel.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/projecttreemodel.moc_parameters --- avogadro/src/projecttreemodeldelegate.moc --- [ 85%] Generating projecttreemodeldelegate.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/projecttreemodeldelegate.moc_parameters --- libavogadro/src/python/CMakeFiles/python-module.dir/all --- Scanning dependencies of target python-module /usr/bin/make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- --- avogadro/src/savedialog.moc --- [ 85%] Generating savedialog.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/savedialog.moc_parameters --- avogadro/src/settingsdialog.moc --- [ 85%] Generating settingsdialog.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/settingsdialog.moc_parameters --- avogadro/src/atomdelegate.moc --- [ 85%] Generating atomdelegate.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/atomdelegate.moc_parameters --- avogadro/src/bonddelegate.moc --- [ 86%] Generating bonddelegate.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/bonddelegate.moc_parameters --- avogadro/src/labeldelegate.moc --- [ 86%] Generating labeldelegate.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/labeldelegate.moc_parameters --- libavogadro/src/python/CMakeFiles/python-module.dir/all --- --- libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o --- --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- --- avogadro/src/moleculedelegate.moc --- [ 86%] Generating moleculedelegate.moc --- libavogadro/src/python/CMakeFiles/python-module.dir/all --- [ 86%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python -I/usr/local/lib/python2.7/site-packages/numpy/core/include -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/python-module.dir/animation.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python/animation.cpp --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/moleculedelegate.moc_parameters --- avogadro/src/residuedelegate.moc --- [ 86%] Generating residuedelegate.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/residuedelegate.moc_parameters --- avogadro/src/selectiondelegate.moc --- [ 86%] Generating selectiondelegate.moc cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/moc-qt4 @/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/selectiondelegate.moc_parameters --- avogadro/src/ui_addenginedialog.h --- [ 86%] Generating ui_addenginedialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/ui_addenginedialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/addenginedialog.ui --- avogadro/src/ui_enginecolorswidget.h --- [ 86%] Generating ui_enginecolorswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/ui_enginecolorswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/enginecolorswidget.ui --- avogadro/src/ui_engineprimitiveswidget.h --- [ 86%] Generating ui_engineprimitiveswidget.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/ui_engineprimitiveswidget.h /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/engineprimitiveswidget.ui --- avogadro/src/ui_importdialog.h --- [ 86%] Generating ui_importdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/ui_importdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/importdialog.ui --- avogadro/src/ui_mainwindow.h --- [ 86%] Generating ui_mainwindow.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/ui_mainwindow.h /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/mainwindow.ui --- avogadro/src/ui_pluginsettings.h --- [ 87%] Generating ui_pluginsettings.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/ui_pluginsettings.h /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/pluginsettings.ui --- avogadro/src/ui_projecttreeeditor.h --- [ 87%] Generating ui_projecttreeeditor.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/ui_projecttreeeditor.h /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/projecttreeeditor.ui --- avogadro/src/ui_settingsdialog.h --- [ 87%] Generating ui_settingsdialog.h cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/uic-qt4 -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/ui_settingsdialog.h /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/settingsdialog.ui --- avogadro/src/qrc_avogadro.cxx --- [ 87%] Generating qrc_avogadro.cxx cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/rcc -name avogadro -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/qrc_avogadro.cxx /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro.qrc --- avogadro/src/avogadro_af.qm --- [ 87%] Generating avogadro_af.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/af.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_af.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_af.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_af.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_af.qm --- avogadro/src/avogadro_ar.qm --- [ 87%] Generating avogadro_ar.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/ar.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ar.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ar.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ar.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ar.qm --- avogadro/src/avogadro_bg.qm --- [ 87%] Generating avogadro_bg.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/bg.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_bg.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_bg.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_bg.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_bg.qm --- avogadro/src/avogadro_ca.qm --- [ 87%] Generating avogadro_ca.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/ca.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ca.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ca.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ca.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ca.qm --- avogadro/src/avogadro_ca@valencia.qm --- [ 87%] Generating avogadro_ca@valencia.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/ca@valencia.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ca@valencia.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ca@valencia.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ca@valencia.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ca@valencia.qm --- avogadro/src/avogadro_cs.qm --- [ 88%] Generating avogadro_cs.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/cs.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_cs.ts --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o --- --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_cs.ts --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- [ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_cs.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_cs.qm --- avogadro/src/avogadro_da.qm --- [ 88%] Generating avogadro_da.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/da.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_da.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_da.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_da.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_da.qm --- avogadro/src/avogadro_de.qm --- [ 88%] Generating avogadro_de.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/de.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_de.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_de.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_de.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_de.qm --- avogadro/src/avogadro_el.qm --- [ 88%] Generating avogadro_el.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/el.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_el.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_el.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_el.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_el.qm --- avogadro/src/avogadro_en_AU.qm --- [ 88%] Generating avogadro_en_AU.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/en_AU.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_en_AU.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_en_AU.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_en_AU.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_en_AU.qm --- avogadro/src/avogadro_en_CA.qm --- [ 88%] Generating avogadro_en_CA.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/en_CA.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_en_CA.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_en_CA.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_en_CA.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_en_CA.qm --- avogadro/src/avogadro_en_GB.qm --- [ 88%] Generating avogadro_en_GB.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/en_GB.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_en_GB.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_en_GB.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_en_GB.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_en_GB.qm --- avogadro/src/avogadro_es.qm --- [ 88%] Generating avogadro_es.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/es.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_es.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_es.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_es.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_es.qm --- avogadro/src/avogadro_et.qm --- [ 88%] Generating avogadro_et.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/et.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_et.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_et.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_et.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_et.qm --- avogadro/src/avogadro_eu.qm --- [ 88%] Generating avogadro_eu.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/eu.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_eu.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_eu.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_eu.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_eu.qm --- avogadro/src/avogadro_fi.qm --- [ 89%] Generating avogadro_fi.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/fi.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_fi.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_fi.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_fi.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_fi.qm --- avogadro/src/avogadro_fr.qm --- [ 89%] Generating avogadro_fr.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/fr.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_fr.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_fr.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_fr.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_fr.qm --- avogadro/src/avogadro_gl.qm --- [ 89%] Generating avogadro_gl.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/gl.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_gl.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_gl.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_gl.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_gl.qm --- avogadro/src/avogadro_he.qm --- [ 89%] Generating avogadro_he.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/he.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_he.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_he.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_he.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_he.qm --- avogadro/src/avogadro_hi.qm --- [ 89%] Generating avogadro_hi.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/hi.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_hi.ts --- libavogadro/src/python/CMakeFiles/python-module.dir/all --- --- libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o --- --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_hi.ts --- libavogadro/src/python/CMakeFiles/python-module.dir/all --- [ 89%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... --- libavogadro/src/python/CMakeFiles/python-module.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python -I/usr/local/lib/python2.7/site-packages/numpy/core/include -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/python-module.dir/atom.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python/atom.cpp --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_hi.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_hi.qm --- avogadro/src/avogadro_hr.qm --- [ 89%] Generating avogadro_hr.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/hr.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_hr.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_hr.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_hr.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_hr.qm --- avogadro/src/avogadro_hu.qm --- [ 89%] Generating avogadro_hu.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/hu.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_hu.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_hu.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_hu.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_hu.qm --- avogadro/src/avogadro_id.qm --- [ 89%] Generating avogadro_id.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/id.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_id.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_id.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_id.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_id.qm --- avogadro/src/avogadro_it.qm --- [ 89%] Generating avogadro_it.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/it.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_it.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_it.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_it.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_it.qm --- avogadro/src/avogadro_ja.qm --- [ 90%] Generating avogadro_ja.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/ja.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ja.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ja.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ja.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ja.qm --- avogadro/src/avogadro_kn.qm --- [ 90%] Generating avogadro_kn.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/kn.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_kn.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_kn.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_kn.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_kn.qm --- avogadro/src/avogadro_ko.qm --- [ 90%] Generating avogadro_ko.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/ko.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ko.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ko.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ko.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ko.qm --- avogadro/src/avogadro_ms.qm --- [ 90%] Generating avogadro_ms.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/ms.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ms.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ms.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ms.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ms.qm --- avogadro/src/avogadro_nb.qm --- [ 90%] Generating avogadro_nb.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/nb.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_nb.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_nb.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_nb.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_nb.qm --- avogadro/src/avogadro_nl.qm --- [ 90%] Generating avogadro_nl.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/nl.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_nl.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_nl.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_nl.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_nl.qm --- avogadro/src/avogadro_oc.qm --- [ 90%] Generating avogadro_oc.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/oc.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_oc.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_oc.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_oc.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_oc.qm --- avogadro/src/avogadro_pl.qm --- [ 90%] Generating avogadro_pl.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/pl.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_pl.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_pl.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_pl.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_pl.qm --- avogadro/src/avogadro_pt.qm --- [ 90%] Generating avogadro_pt.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/pt.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_pt.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_pt.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_pt.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_pt.qm --- avogadro/src/avogadro_pt_BR.qm --- [ 90%] Generating avogadro_pt_BR.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/pt_BR.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_pt_BR.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_pt_BR.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_pt_BR.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_pt_BR.qm --- avogadro/src/avogadro_ru.qm --- [ 91%] Generating avogadro_ru.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/ru.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ru.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ru.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ru.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ru.qm --- avogadro/src/avogadro_sk.qm --- [ 91%] Generating avogadro_sk.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/sk.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sk.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sk.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sk.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sk.qm --- avogadro/src/avogadro_sl.qm --- [ 91%] Generating avogadro_sl.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/sl.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sl.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sl.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sl.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sl.qm --- avogadro/src/avogadro_sq.qm --- [ 91%] Generating avogadro_sq.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/sq.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sq.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sq.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sq.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sq.qm --- avogadro/src/avogadro_sr.qm --- [ 91%] Generating avogadro_sr.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/sr.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sr.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sr.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sr.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sr.qm --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o --- [ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- --- avogadro/src/avogadro_sv.qm --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- [ 91%] Generating avogadro_sv.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/sv.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sv.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sv.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sv.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_sv.qm --- avogadro/src/avogadro_ta.qm --- [ 91%] Generating avogadro_ta.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/ta.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ta.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ta.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ta.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ta.qm --- avogadro/src/avogadro_th.qm --- [ 91%] Generating avogadro_th.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/th.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_th.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_th.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_th.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_th.qm --- avogadro/src/avogadro_tr.qm --- [ 91%] Generating avogadro_tr.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/tr.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_tr.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_tr.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_tr.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_tr.qm --- avogadro/src/avogadro_ug.qm --- [ 92%] Generating avogadro_ug.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/ug.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ug.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ug.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ug.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_ug.qm --- avogadro/src/avogadro_uk.qm --- [ 92%] Generating avogadro_uk.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/uk.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_uk.ts --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o --- --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_uk.ts --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- [ 92%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_uk.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_uk.qm --- avogadro/src/avogadro_vi.qm --- [ 92%] Generating avogadro_vi.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/vi.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_vi.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_vi.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_vi.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_vi.qm --- avogadro/src/avogadro_zh_CN.qm --- [ 92%] Generating avogadro_zh_CN.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/zh_CN.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_zh_CN.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_zh_CN.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_zh_CN.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_zh_CN.qm --- avogadro/src/avogadro_zh_TW.qm --- [ 92%] Generating avogadro_zh_TW.qm cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lconvert -i /wrkdirs/science/avogadro/avogadro-1.1.1/i18n/avogadro/zh_TW.po -o /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_zh_TW.ts cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lupdate-qt4 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_zh_TW.ts Scanning directory '/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src'... --- libavogadro/src/python/CMakeFiles/python-module.dir/all --- --- libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o --- [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python -I/usr/local/lib/python2.7/site-packages/numpy/core/include -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/python-module.dir/bond.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python/bond.cpp --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/local/bin/lrelease-qt4 -compress -removeidentical -silent /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_zh_TW.ts -qm /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/avogadro_zh_TW.qm --- avogadro/src/CMakeFiles/avogadro-app.dir/depend --- cd /wrkdirs/science/avogadro/avogadro-1.1.1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src /wrkdirs/science/avogadro/avogadro-1.1.1 /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake Scanning dependencies of target avogadro-app /usr/bin/make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build --- avogadro/src/CMakeFiles/avogadro-app.dir/editcommands.cpp.o --- [ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/editcommands.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -I/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -I/usr/local/include/openbabel-2.0 -I/usr/local/include/eigen2 -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtNetwork -isystem /usr/local/include/qt4/QtCore -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -o CMakeFiles/avogadro-app.dir/editcommands.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/editcommands.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o --- [ 92%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx --- libavogadro/src/python/CMakeFiles/python-module.dir/all --- --- libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o --- [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python -I/usr/local/lib/python2.7/site-packages/numpy/core/include -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/python-module.dir/camera.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python/camera.cpp --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- --- avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o --- [ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -I/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -I/usr/local/include/openbabel-2.0 -I/usr/local/include/eigen2 -isystem /usr/local/include/qt4 -isystem 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/usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o --- [ 92%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem 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avogadro/src/CMakeFiles/avogadro-app.dir/all --- --- avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o --- [ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -I/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -I/usr/local/include/openbabel-2.0 -I/usr/local/include/eigen2 -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtNetwork -isystem /usr/local/include/qt4/QtCore -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 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-isystem /usr/local/include/qt4/QtCore -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/addenginedialog.cpp --- libavogadro/src/python/CMakeFiles/python-module.dir/all --- --- libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o --- [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem 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-D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -I/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -I/usr/local/include/openbabel-2.0 -I/usr/local/include/eigen2 -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtNetwork -isystem /usr/local/include/qt4/QtCore -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -o CMakeFiles/avogadro-app.dir/application.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/application.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/all --- [ 92%] Built target gamessextension --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- --- 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/usr/local/include/qt4/QtNetwork -isystem /usr/local/include/qt4/QtCore -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/enginelistview.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- [ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS 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/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python/eigen.cpp:3: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- --- avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o --- [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG 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-fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/pluginsettings.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o --- [ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem 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-fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/primitiveitemmodel.cpp --- libavogadro/src/python/CMakeFiles/python-module.dir/all --- --- libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o --- [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore 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-idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx --- libavogadro/src/python/CMakeFiles/python-module.dir/all --- --- libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o --- [ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem 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-I/usr/local/include -O2 -fno-strict-aliasing -o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/primitivetreeview.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o --- [ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore 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-I/usr/local/include -O2 -fno-strict-aliasing -o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/projecttreeeditor.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o --- [ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore 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libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o --- [ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions 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libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o --- [ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include -I/wrkdirs/science/avogadro/include/python2.7 -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- --- avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o --- [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB 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avogadro/src/CMakeFiles/avogadro-app.dir/savedialog.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -I/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -I/usr/local/include/openbabel-2.0 -I/usr/local/include/eigen2 -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtNetwork -isystem /usr/local/include/qt4/QtCore -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -o CMakeFiles/avogadro-app.dir/savedialog.cpp.o -c 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/usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/settingsdialog.cpp --- libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/all --- --- lib/inputfileextension.so --- [ 97%] Linking CXX shared module ../../../../lib/inputfileextension.so cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/extensions/quantuminput && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib -shared -o ../../../../lib/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -L/usr/local/lib ../../../../lib/libavogadro.so.1.1.1 /usr/local/lib/qt4/libQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl,-rpath,/usr/local/lib:/wrkdirs/science/avogadro/avogadro-1.1.1/lib:/usr/local/lib/qt4 [ 97%] Built target inputfileextension --- avogadro/src/CMakeFiles/avogadro-app.dir/all --- --- avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o --- [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -I/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -I/usr/local/include/openbabel-2.0 -I/usr/local/include/eigen2 -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtNetwork -isystem /usr/local/include/qt4/QtCore -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/projectdelegates/atomdelegate.cpp --- libavogadro/src/python/CMakeFiles/python-module.dir/all --- --- libavogadro/src/python/CMakeFiles/python-module.dir/fragment.cpp.o --- [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/fragment.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src/python && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/local/include 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-idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/projectdelegates/bonddelegate.cpp --- avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o --- [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include -I/wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src -I/usr/local/include/openbabel-2.0 -I/usr/local/include/eigen2 -isystem /usr/local/include/qt4 -isystem /usr/local/include/qt4/QtOpenGL -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtNetwork -isystem /usr/local/include/qt4/QtCore -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -c /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src/projectdelegates/labeldelegate.cpp --- avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o --- [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o cd /wrkdirs/science/avogadro/avogadro-1.1.1/avogadro/src && /usr/bin/c++ -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/wrkdirs/science/avogadro/avogadro-1.1.1/libavogadro/include 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-idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -pipe -idirafter /usr/local/include/eigen2 -idirafter /usr/local/include -I/usr/local/include -O2 -fno-strict-aliasing -L/usr/local/lib CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o CMakeFiles/avogadro-app.dir/application.cpp.o CMakeFiles/avogadro-app.dir/detachedview.cpp.o CMakeFiles/avogadro-app.dir/editcommands.cpp.o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o CMakeFiles/avogadro-app.dir/importdialog.cpp.o CMakeFiles/avogadro-app.dir/main.cpp.o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o CMakeFiles/avogadro-app.dir/savedialog.cpp.o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o 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/wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/beta-D-fructopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/alpha-L-galactopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/alpha-L-arabinopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/beta-D-xylopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/alpha-D-idopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/beta-D-mannopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/alpha-L-rhamnopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/beta-D-tagatopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/alpha-D-galactopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/alpha-D-fucopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/beta-D-arabinopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/beta-D-galactopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/alpha-D-glucuronopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/beta-D-allopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/beta-D-gulopyranose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_sugars/alpha-L-lyxopyranose.cml -- Installing: 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/wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/carbohydrates -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/carbohydrates/d-arabinose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/carbohydrates/d-lyxose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/carbohydrates/d-threose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/carbohydrates/d-altrose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/carbohydrates/d-gulose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/carbohydrates/d-psicose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/carbohydrates/d-allose.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/carbohydrates/d-galactose.cml -- Installing: 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Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/eicosane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/decane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/tetradecane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/nonane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/heptane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/dodecane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/2-methylpropane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/methane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/butane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/tridecane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/tetracosane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/octane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/undecane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/hexane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/ethane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkanes/propane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-valine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-tryptophan.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-isoleucine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-histidine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-phenylalanine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-allo-isoleucine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-tyrosine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-aspartic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-proline.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-arginine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-glutamic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-arginine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-leucine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-threonine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-glutamic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-glutamine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-proline.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-leucine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-phenylalanine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-4-nitrophenylalanine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-methionine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-asparagine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-allo-threonine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-glutamine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-alanine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-asparagine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-serine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-aspartic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-alanine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/glycine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-serine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-valine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-cysteine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-lysine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-tyrosine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-cysteine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-lysine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-tryptophan.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-isoleucine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-threonine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/L-methionine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amino_acids/D-histidine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/water.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amides -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amides/oxamide.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amides/ethyl_carbamate.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amides/N_N-dimethylacetamide.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amides/N_N-dimethylformamide.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amides/acetamide.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3-diene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_4-diene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes/cyclohexene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes/Z-cycloheptene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5-triene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_3-diene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_4-diene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes/Z-cyclooctene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes/cyclopentene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes/cyclopenta-1_3-diene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3_5-triene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5_7-tetraene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3-diene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/steroids -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/steroids/testosterone.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/steroids/cholesterol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/steroids/estradiol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/thiols -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/thiols/butane-1-thiol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/thiols/hexane-1-thiol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/thiols/methanethiol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/thiols/ethanethiol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/thiols/proprane-2-thiol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/thiols/R_butane-2-thiol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/thiols/octane-1-thiol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/thiols/2-methylproprane-2-thiol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/thiols/heptane-1-thiol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/thiols/ethane-1_2-dithiol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/thiols/pentane-1-thiol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/thiols/proprane-1-thiol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/quinazoline.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/aniline.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/phenol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/benzoic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/cinnoline.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/nitrobenzene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/caffeine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/1H-indole.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/benzene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/7H-purine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/chromone.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/4H-chromene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/tetralin.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/9H-xanthene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/anthracene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/uric_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/acenaphthylene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/quinoline.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/phenanthrene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/benzofuran.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/benzaldehyde.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/2H-chromene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/1_10-phenanthroline.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/9H-fluorene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/isoquinoline.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/coumarin.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/benzoyl_chloride.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/benzothiophene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/acridine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/phthalimide.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/anisole.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/acenaphthenequinone.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/9H-carbazole.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/1_8-naphthyridine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/naphthalene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/1H-indene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/acenaphthene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aromatics/toluene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ketones -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ketones/cyclohexanone.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ketones/p-benzoquinone.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ketones/butanone.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ketones/methyl_vinyl_ketone.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ketones/acetone.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/adamantane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/cyclohexane-twist-boat.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/cycloheptane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/cis-decahydronaphthalene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/cyclodecane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/cyclohexane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/cyclooctane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/cyclopentane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/abietic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/trans-decahydronaphthalene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/cyclopropane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/cyclononane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/cubane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/cyclobutane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/1R-camphor.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/cyclohexane-chair.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/norbornane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/cyclic_alkanes/1R-camphene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/1H-pyrrole.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/picolinic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/furan.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/1_3-thiazole.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/1H-indole.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/pyridine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/1H-pyrazole.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/isonicotinamide.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/1_3-oxazole.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/1_2-thiazole.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/1_2-oxazole.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/nicotinic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/benzothiophene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/benzofuran.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/isonicotinic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/picolinamide.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/thiophene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/heteroaromatics/nicotinamide.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/carbamides -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/carbamides/urea.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/Z-oct-4-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/Z-hex-2-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/Z-oct-3-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/E-hex-2-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/E-oct-2-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/3E-penta-1_3-diene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/but-1-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/Z-hept-2-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/E-hex-3-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/propene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/Z-but-2-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/pent-1-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/hept-1-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/Z-hex-3-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/oct-1-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/Z-pent-2-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/Z-hept-3-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/E-oct-3-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/2-methylbuta-1_3-diene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/3Z_3-ethylhepta-1_3-diene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/ethene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/2-methylbut-2-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/3Z-penta-1_3-diene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/E-hept-3-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/E-oct-4-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/E-pent-2-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/E-but-2-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/E-hept-2-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/hex-1-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkenes/Z-oct-2-ene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/nitriles -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/nitriles/1_1_1-trichloroacetonitrile.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/nitriles/butyronitrile.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/nitriles/propionitrile.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/nitriles/acetonitrile.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/nitriles/isobutyronitrile.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/sulfoxides -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/sulfoxides/dimethyl_sulfoxide.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ligands -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ligands/Cp-cyclopentadienyl.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alcohols -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alcohols/ethane-1_2-diol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alcohols/propan-2-ol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alcohols/cyclohexanol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alcohols/cyclopentanol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alcohols/2-aminoethanol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alcohols/propan-1-ol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alcohols/but-2-yne-1_4-diol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alcohols/propane-1_2_3-triol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alcohols/ethanol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alcohols/methanol.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/S-sec-butylamine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/2-aminopropane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/1H-azepine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/triethylenediamine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/pyrrolidine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/ethylamine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/ammonia.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/tert-butylamine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/dimethylamine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/piperidine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/methylamine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/piperazine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/triethylamine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/diethylamine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/azepane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/amines/trimethylamine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/macrocycles -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/macrocycles/phthalocyanine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/macrocycles/porphin.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aldehydes -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aldehydes/acetaldehyde.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/aldehydes/formaldehyde.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids/linoleic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids/pentanoic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids/decanoic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids/arachidonic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids/octanoic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids/lauric_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids/palmitic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids/myristic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids/hexanoic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids/linolenic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids/cervonic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids/oleic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/fatty_acids/stearic_acid.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/coordination -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/coordination/3-trigonal-pyramidal.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/coordination/3-trigonal-planar.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/coordination/4-planar.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/coordination/5-square-pyramidal.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/coordination/6-octahedral.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/coordination/4-tetrahedral.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/coordination/5-trigonal-bipyramidal.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkynes -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkynes/acetylene.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/alkynes/propyne.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ethers -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ethers/tetrahydrofuran.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ethers/dipropylether.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ethers/diethylether.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ethers/dibutylether.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ethers/ethylmethylether.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ethers/dimethylether.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ethers/diisopropylether.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ethers/1_4-dioxane.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ethers/tetrahydropyran.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/ethers/di-tert-butylether.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/nucleobases -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/nucleobases/thymine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/nucleobases/uracil.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/nucleobases/cytosine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/nucleobases/guanine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/fragments/nucleobases/adenine.cml -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-asn.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-val.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-sec.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-thr.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-arg.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-pro.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-glu.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-his.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-trp.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-arg.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-ser.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-tyr.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-glu.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-asp.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-met.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-his.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-ala.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-lys.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-phe.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-gln.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-trp.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-ser.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-val.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-pyl.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-phe.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-leu.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-lys.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-pro.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/gly.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-ile.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-asp.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-ile.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-thr.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-asn.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-cys.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-gln.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-tyr.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-cys.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-ala.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/d-met.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/builder/amino/l-leu.zmat -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/crystals -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/crystals/zeolites -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/crystals/zeolites/SIV.cif -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/crystals/zeolites/SZR.cif -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/crystals/zeolites/IWV.cif -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/crystals/zeolites/GIU.cif -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/crystals/zeolites/SVR.cif -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/crystals/zeolites/MTW.cif -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/crystals/zeolites/MTT.cif -- Installing: /wrkdirs/science/avogadro/stage/usr/local/share/avogadro/crystals/zeolites/AFO.cif -- Installing: 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-- Installing: /wrkdirs/science/avogadro/stage/usr/local/man/man1/avogadro.1 -- Installing: /wrkdirs/science/avogadro/stage/usr/local/man/man1/avopkg.1 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for avogadro-1.1.1_3 file sizes/checksums [1153]: .......... done packing files [1153]: .......... done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for avogadro-1.1.1_3 build of science/avogadro ended at Mon Oct 3 20:39:05 PDT 2016 build time: 00:09:24