=> Building biology/avida build started at Tue Oct 4 21:02:23 PDT 2016 port directory: /usr/ports/biology/avida building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: ports@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../06//usr/ports/biology/avida/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=avida-2.12.4 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for avida-2.12.4: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/biology/avida XDG_CONFIG_HOME=/wrkdirs/biology/avida HOME=/wrkdirs/biology/avida TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/biology/avida XDG_CONFIG_HOME=/wrkdirs/biology/avida HOME=/wrkdirs/biology/avida TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib" LIBS="" CXX="c++" CXXFLAGS=" -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/avida" EXAMPLESDIR="share/examples/avida" DATADIR="share/avida" WWWDIR="www/avida" ETCDIR="etc/avida" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/avida DOCSDIR=/usr/local/share/doc/avida EXAMPLESDIR=/usr/local/share/examples/avida WWWDIR=/usr/local/www/avida ETCDIR=/usr/local/etc/avida --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> NOTICE: The avida port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> avida-2.12.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> avida-2.12.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of avida-2.12.4 =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The avida port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by avida-2.12.4 for building =========================================================================== =================================================== ===> NOTICE: The avida port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by avida-2.12.4 for building => SHA256 Checksum OK for avida-2.12.4-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The avida port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by avida-2.12.4 for building ===> Extracting for avida-2.12.4 => SHA256 Checksum OK for avida-2.12.4-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for avida-2.12.4 ===> Applying ports patches for avida-2.12.4 =========================================================================== =================================================== ===> avida-2.12.4 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.6.2.txz Installing cmake-3.6.2... `-- Installing expat-2.2.0... `-- Extracting expat-2.2.0: .......... done `-- Installing cmake-modules-3.6.2... `-- Extracting cmake-modules-3.6.2: .......... done `-- Installing curl-7.50.3... | `-- Installing libressl-2.4.3... | `-- Extracting libressl-2.4.3: .......... done | `-- Installing ca_root_nss-3.27... | `-- Extracting ca_root_nss-3.27: ....... done | `-- Installing krb5-1.14.4... | | `-- Installing pkgconf-1.0.1... | | `-- Extracting pkgconf-1.0.1: .......... done | | `-- Installing gettext-runtime-0.19.8.1... | | `-- Installing indexinfo-0.2.5... | | `-- Extracting indexinfo-0.2.5: .... done | | `-- Extracting gettext-runtime-0.19.8.1: .......... done | `-- Extracting krb5-1.14.4: .......... done `-- Extracting curl-7.50.3: .......... done `-- Installing libarchive-3.2.1,1... | `-- Installing liblz4-131... | `-- Extracting liblz4-131: .......... done | `-- Installing lzo2-2.09... | `-- Extracting lzo2-2.09: .......... done `-- Extracting libarchive-3.2.1,1: .......... done `-- Installing jsoncpp-1.7.3... `-- Extracting jsoncpp-1.7.3: .......... done `-- Installing ncurses-6.0_5... `-- Extracting ncurses-6.0_5: .......... done Extracting cmake-3.6.2: .......... done Message from ca_root_nss-3.27: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> avida-2.12.4 depends on file: /usr/local/bin/cmake - found ===> Returning to build of avida-2.12.4 ===> avida-2.12.4 depends on file: /usr/local/lib/libncurses.so.6 - found =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for avida-2.12.4 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/biology/avida/.build -- The C compiler identification is GNU 5.4.1 -- The CXX compiler identification is GNU 5.4.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_FUSED_MADD -- Performing Test HAVE_FUSED_MADD - Failed -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/biology/avida/.build =========================================================================== =================================================== ===> Building for avida-2.12.4 /usr/local/bin/cmake -H/wrkdirs/biology/avida/avida-2.12.4-src -B/wrkdirs/biology/avida/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/biology/avida/.build/CMakeFiles /wrkdirs/biology/avida/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- avida-core/CMakeFiles/avidacore.dir/all --- --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- /usr/bin/make -f libs/apto/src/CMakeFiles/aptoshared.dir/build.make libs/apto/src/CMakeFiles/aptoshared.dir/depend --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- /usr/bin/make -f libs/apto/src/CMakeFiles/aptostatic.dir/build.make libs/apto/src/CMakeFiles/aptostatic.dir/depend --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- /usr/bin/make -f libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/build.make libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/depend --- avida-core/CMakeFiles/avidacore.dir/all --- /usr/bin/make -f avida-core/CMakeFiles/avidacore.dir/build.make avida-core/CMakeFiles/avidacore.dir/depend --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- --- libs/apto/src/CMakeFiles/aptoshared.dir/depend --- cd /wrkdirs/biology/avida/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/biology/avida/avida-2.12.4-src /wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src /wrkdirs/biology/avida/.build /wrkdirs/biology/avida/.build/libs/apto/src /wrkdirs/biology/avida/.build/libs/apto/src/CMakeFiles/aptoshared.dir/DependInfo.cmake --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/depend --- cd /wrkdirs/biology/avida/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/biology/avida/avida-2.12.4-src /wrkdirs/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4 /wrkdirs/biology/avida/.build /wrkdirs/biology/avida/.build/libs/tcmalloc-1.4 /wrkdirs/biology/avida/.build/libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/DependInfo.cmake --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- Scanning dependencies of target aptoshared /usr/bin/make -f libs/apto/src/CMakeFiles/aptoshared.dir/build.make libs/apto/src/CMakeFiles/aptoshared.dir/build --- avida-core/CMakeFiles/avidacore.dir/all --- --- avida-core/CMakeFiles/avidacore.dir/depend --- cd /wrkdirs/biology/avida/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/biology/avida/avida-2.12.4-src /wrkdirs/biology/avida/avida-2.12.4-src/avida-core /wrkdirs/biology/avida/.build /wrkdirs/biology/avida/.build/avida-core /wrkdirs/biology/avida/.build/avida-core/CMakeFiles/avidacore.dir/DependInfo.cmake --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- --- libs/apto/src/CMakeFiles/aptoshared.dir/core/FileSystem.cc.o --- --- libs/apto/src/CMakeFiles/aptoshared.dir/core/RefCount.cc.o --- [ 1%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/core/RefCount.cc.o --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- Scanning dependencies of target tcmalloc-1.4 --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- cd /wrkdirs/biology/avida/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/core/RefCount.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/core/RefCount.cc --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- /usr/bin/make -f libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/build.make libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/build --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- --- libs/apto/src/CMakeFiles/aptoshared.dir/core/FileSystem.cc.o --- [ 1%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/core/FileSystem.cc.o cd /wrkdirs/biology/avida/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/core/FileSystem.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o --- [ 2%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o cd /wrkdirs/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.cc --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- --- libs/apto/src/CMakeFiles/aptoshared.dir/core/Thread.cc.o --- [ 2%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/core/Thread.cc.o cd /wrkdirs/biology/avida/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/core/Thread.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/core/Thread.cc --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/central_freelist.cc.o --- [ 2%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/central_freelist.cc.o cd /wrkdirs/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/central_freelist.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/central_freelist.cc --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- --- libs/apto/src/CMakeFiles/aptoshared.dir/platform/Platform.cc.o --- --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- --- libs/apto/src/CMakeFiles/aptostatic.dir/depend --- --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- [ 3%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/platform/Platform.cc.o --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- cd /wrkdirs/biology/avida/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/biology/avida/avida-2.12.4-src /wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src /wrkdirs/biology/avida/.build /wrkdirs/biology/avida/.build/libs/apto/src /wrkdirs/biology/avida/.build/libs/apto/src/CMakeFiles/aptostatic.dir/DependInfo.cmake --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- cd /wrkdirs/biology/avida/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/platform/Platform.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/platform/Platform.cc --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- Scanning dependencies of target aptostatic /usr/bin/make -f libs/apto/src/CMakeFiles/aptostatic.dir/build.make libs/apto/src/CMakeFiles/aptostatic.dir/build --- libs/apto/src/CMakeFiles/aptostatic.dir/core/FileSystem.cc.o --- --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- --- libs/apto/src/CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o --- [ 3%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o cd /wrkdirs/biology/avida/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/stat/ContingencyTable.cc --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- [ 3%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/core/FileSystem.cc.o cd /wrkdirs/biology/avida/.build/libs/apto/src && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/core/FileSystem.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- --- libs/apto/src/CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o --- [ 4%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o cd /wrkdirs/biology/avida/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc --- avida-core/CMakeFiles/avidacore.dir/all --- Scanning dependencies of target avidacore /usr/bin/make -f avida-core/CMakeFiles/avidacore.dir/build.make avida-core/CMakeFiles/avidacore.dir/build --- avida-core/CMakeFiles/avidacore.dir/source/actions/cActionLibrary.cc.o --- [ 4%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/actions/cActionLibrary.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ 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-I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/actions/SaveLoadActions.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions/SaveLoadActions.cc --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- --- lib/libapto.so --- [ 18%] Linking CXX shared library ../../../lib/libapto.so cd /wrkdirs/biology/avida/.build/libs/apto/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/aptoshared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -L/usr/local/lib -Wl,-rpath=/usr/local/lib -shared -Wl,-soname,libapto.so -o ../../../lib/libapto.so CMakeFiles/aptoshared.dir/core/FileSystem.cc.o 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avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareBase.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareBase.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareCPU.cc.o --- [ 37%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareCPU.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareCPU.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareExperimental.cc.o --- [ 37%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareExperimental.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareExperimental.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareGX.cc.o --- [ 38%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareGX.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareGX.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareExperimental.cc.o --- /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc: In member function 'bool cHardwareExperimental::Inst_RotateNeuronAVRight(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:3562:60: warning: 'avatar_num' is used uninitialized in this function [-Wuninitialized] int avatar_num = m_threads[m_cur_thread].reg[avatar_num].value; ^ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareManager.cc.o --- [ 39%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareManager.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareManager.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.cc --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareSMT.cc.o --- [ 39%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareSMT.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareSMT.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.cc --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareExperimental.cc.o --- /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc: In member function 'int cHardwareExperimental::FindModifiedNextRegister(int)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:1370:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] if (m_inst_set->IsNop(getIP().GetNextInst())) { ^ /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc: In member function 'int cHardwareExperimental::FindModifiedHead(int)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:1399:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] if (m_inst_set->IsNop(getIP().GetNextInst())) { ^ /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc: In member function 'bool cHardwareExperimental::Inst_ChangePredGroup(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:4689:47: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] if (!(m_inst_set->IsNop(getIP().GetNextInst()))) return false; ^ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareStatusPrinter.cc.o --- [ 40%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareStatusPrinter.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareStatusPrinter.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareStatusPrinter.cc --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareCPU.cc.o --- /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_IfEquX(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:2249:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] if (m_inst_set->IsNop(getIP().GetNextInst())) { ^ /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_IfGrX(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:2218:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] if (m_inst_set->IsNop(getIP().GetNextInst())) { ^ /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_SetHead(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] if (m_inst_set->IsNop(getIP().GetNextInst())) { ^ /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_Zero(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareTransSMT.cc.o --- --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareCPU.cc.o --- /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_GetCycles(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareTransSMT.cc.o --- [ 40%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareTransSMT.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareTransSMT.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.cc --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareCPU.cc.o --- /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MemSize(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_GetHead(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_SetMatingDisplayA(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_Not(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MaskSignBit(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MaskOffLower15Bits(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MaskOffLower16Bits(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MaskOffLower8Bits(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MaskOffLower16Bits_defaultAX(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MaskOffLower14Bits(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MaskOffLower15Bits_defaultAX(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MaskOffLower12Bits(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MaskOffLower14Bits_defaultAX(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MaskOffLower8Bits_defaultAX(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MaskOffLower13Bits_defaultAX(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MaskOffLower13Bits(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_MaskOffLower12Bits_defaultAX(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_GetEasterly(cAvidaContext&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHeadCPU.cc.o --- [ 41%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHeadCPU.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHeadCPU.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHeadCPU.cc --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cInstSet.cc.o --- [ 41%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cInstSet.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cInstSet.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.cc --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cTestCPU.cc.o --- [ 42%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cTestCPU.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cTestCPU.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.cc --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareCPU.cc.o --- /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'int cHardwareCPU::FindModifiedNextRegister(int)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1588:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] if (m_inst_set->IsNop(getIP().GetNextInst())) { ^ /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'int cHardwareCPU::FindModifiedHead(int)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1617:45: warning: '.cInstruction::m_operand' may be used uninitialized in this function [-Wmaybe-uninitialized] if (m_inst_set->IsNop(getIP().GetNextInst())) { ^ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cTestCPUInterface.cc.o --- [ 42%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cTestCPUInterface.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cTestCPUInterface.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPUInterface.cc --- avida-core/CMakeFiles/avidacore.dir/source/data/Manager.cc.o --- [ 43%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/data/Manager.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/data/Manager.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/data/Manager.cc --- avida-core/CMakeFiles/avidacore.dir/source/drivers/cDefaultAnalyzeDriver.cc.o --- [ 43%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/drivers/cDefaultAnalyzeDriver.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/drivers/cDefaultAnalyzeDriver.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc --- avida-core/CMakeFiles/avidacore.dir/source/drivers/cDefaultRunDriver.cc.o --- [ 44%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/drivers/cDefaultRunDriver.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/drivers/cDefaultRunDriver.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.cc --- avida-core/CMakeFiles/avidacore.dir/source/drivers/cFallbackWorldDriver.cc.o --- [ 44%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/drivers/cFallbackWorldDriver.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/drivers/cFallbackWorldDriver.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cFallbackWorldDriver.cc --- avida-core/CMakeFiles/avidacore.dir/source/main/cAvidaConfig.cc.o --- [ 45%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cAvidaConfig.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cAvidaConfig.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main/cAvidaConfig.cc --- avida-core/CMakeFiles/avidacore.dir/source/main/cBirthChamber.cc.o --- [ 46%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cBirthChamber.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cBirthChamber.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.cc --- avida-core/CMakeFiles/avidacore.dir/source/main/cBirthDemeHandler.cc.o --- [ 46%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cBirthDemeHandler.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source 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cOrganism::ReceiveMessage(cOrgMessage&)': /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:1113:67: warning: switch condition has type bool [-Wswitch-bool] switch(m_world->GetConfig().MESSAGE_RECV_BUFFER_BEHAVIOR.Get()) { ^ --- avida-core/CMakeFiles/avidacore.dir/source/main/cPhenPlastUtil.cc.o --- [ 62%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cPhenPlastUtil.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/main 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avida-core/CMakeFiles/avida-viewer.dir/all --- /usr/bin/make -f avida-core/CMakeFiles/avida-viewer.dir/build.make avida-core/CMakeFiles/avida-viewer.dir/depend --- avida-core/CMakeFiles/avida.dir/all --- /usr/bin/make -f avida-core/CMakeFiles/avida.dir/build.make avida-core/CMakeFiles/avida.dir/depend --- avida-core/CMakeFiles/avida.dir/depend --- cd /wrkdirs/biology/avida/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/biology/avida/avida-2.12.4-src /wrkdirs/biology/avida/avida-2.12.4-src/avida-core /wrkdirs/biology/avida/.build /wrkdirs/biology/avida/.build/avida-core /wrkdirs/biology/avida/.build/avida-core/CMakeFiles/avida.dir/DependInfo.cmake --- avida-core/CMakeFiles/avida-viewer.dir/all --- --- avida-core/CMakeFiles/avida-viewer.dir/depend --- cd /wrkdirs/biology/avida/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/biology/avida/avida-2.12.4-src /wrkdirs/biology/avida/avida-2.12.4-src/avida-core /wrkdirs/biology/avida/.build 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-I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/public -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/include/private -I/wrkdirs/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cHistScreen.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cMapScreen.cc.o --- [ 91%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cMapScreen.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions 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-I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cMenuWindow.cc.o -c /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMenuWindow.cc --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cOptionsScreen.cc.o --- [ 92%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cOptionsScreen.cc.o cd /wrkdirs/biology/avida/.build/avida-core && /usr/bin/c++ -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/wrkdirs/biology/avida/avida-2.12.4-src/avida-core/source/cpu 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/wrkdirs/biology/avida/.build/CMakeFiles 0 =========================================================================== =================================================== ===> avida-2.12.4 depends on file: /usr/local/lib/libncurses.so.6 - found =========================================================================== =================================================== ===> Staging for avida-2.12.4 ===> Generating temporary packing list install -m 555 /wrkdirs/biology/avida/avida-2.12.4-src/avida.sh /wrkdirs/biology/avida/stage/usr/local/bin/avida install -s -m 555 /wrkdirs/biology/avida/.build/bin/avida /wrkdirs/biology/avida/stage/usr/local/lib/avida install -m 555 /wrkdirs/biology/avida/avida-2.12.4-src/avida-viewer.sh /wrkdirs/biology/avida/stage/usr/local/bin/avida-viewer install -s -m 555 /wrkdirs/biology/avida/.build/bin/avida-viewer /wrkdirs/biology/avida/stage/usr/local/lib/avida install -m 0644 /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/support/config/*.cfg /wrkdirs/biology/avida/avida-2.12.4-src/avida-core/support/config/*.org /wrkdirs/biology/avida/stage/usr/local/lib/avida ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for avida-2.12.4 file sizes/checksums [130]: .. done packing files [130]: .. done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for avida-2.12.4 build of biology/avida ended at Tue Oct 4 21:08:24 PDT 2016 build time: 00:06:00