=> Building biology/ariadne build started at Wed Oct 5 05:35:34 PDT 2016 port directory: /usr/ports/biology/ariadne building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: ports@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../09//usr/ports/biology/ariadne/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=ariadne-1.3 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for ariadne-1.3: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/biology/ariadne XDG_CONFIG_HOME=/wrkdirs/biology/ariadne HOME=/wrkdirs/biology/ariadne TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/biology/ariadne XDG_CONFIG_HOME=/wrkdirs/biology/ariadne HOME=/wrkdirs/biology/ariadne TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/ariadne" EXAMPLESDIR="share/examples/ariadne" DATADIR="share/ariadne" WWWDIR="www/ariadne" ETCDIR="etc/ariadne" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ariadne DOCSDIR=/usr/local/share/doc/ariadne EXAMPLESDIR=/usr/local/share/examples/ariadne WWWDIR=/usr/local/www/ariadne ETCDIR=/usr/local/etc/ariadne --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> NOTICE: The ariadne port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port =========================================================================== =================================================== ===> ariadne-1.3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> ariadne-1.3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ariadne-1.3 =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The ariadne port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by ariadne-1.3 for building =========================================================================== =================================================== ===> NOTICE: The ariadne port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by ariadne-1.3 for building => SHA256 Checksum OK for ariadne-1.3.tar.Z. =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The ariadne port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by ariadne-1.3 for building ===> Extracting for ariadne-1.3 => SHA256 Checksum OK for ariadne-1.3.tar.Z. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for ariadne-1.3 =========================================================================== =================================================== ===> ariadne-1.3 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz Installing gmake-4.2.1_1... `-- Installing indexinfo-0.2.5... `-- Extracting indexinfo-0.2.5: .... done `-- Installing gettext-runtime-0.19.8.1... `-- Extracting gettext-runtime-0.19.8.1: .......... done Extracting gmake-4.2.1_1: .......... done ===> ariadne-1.3 depends on executable: gmake - found ===> Returning to build of ariadne-1.3 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for ariadne-1.3 =========================================================================== =================================================== ===> Building for ariadne-1.3 gmake[1]: Entering directory '/wrkdirs/biology/ariadne/SRC-1.3' mkdir -p ./DragonFly cc -c -pipe -O2 -fno-strict-aliasing -g -I./Include/ -o DragonFly/cl.o cl.c; cl.c: In function 'FileDate': cl.c:673:10: warning: function returns address of local variable [-Wreturn-local-addr] return t; ^ cl.c:652:8: note: declared here char date[256], *t; ^ cc -c -pipe -O2 -fno-strict-aliasing -g -I./Include/ -o DragonFly/searchpath.o searchpath.c; cc -c -pipe -O2 -fno-strict-aliasing -g -I./Include/ -o DragonFly/readline.o readline.c; cc -c -pipe -O2 -fno-strict-aliasing -g -I./Include/ -o DragonFly/seq_util.o seq_util.c; seq_util.c: In function 'Read_nbrf_Sq': seq_util.c:676:1: warning: type of 'text_offset' defaults to 'int' [-Wimplicit-int] Read_nbrf_Sq( name, database, offset, text_offset ) ^ cc -c -pipe -O2 -fno-strict-aliasing -g -I./Include/ -o DragonFly/gaplib.o gaplib.c; cc -c -pipe -O2 -fno-strict-aliasing -g -I./Include/ -o DragonFly/cmp.o cmp.c; cc -c -pipe -O2 -fno-strict-aliasing -g -I./Include/ -o DragonFly/profile_util.o profile_util.c; cc -c -pipe -O2 -fno-strict-aliasing -g -I./Include/ -o DragonFly/profile_stat.o profile_stat.c; cc -c -pipe -O2 -fno-strict-aliasing -g -I./Include/ -o DragonFly/prospero_utils.o prospero_utils.c; cc -c -pipe -O2 -fno-strict-aliasing -g -I./Include/ -o DragonFly/topalign.o topalign.c; topalign.c: In function 'TopAlignProteinToProfile': topalign.c:96:14: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] int ci = toupper(seq[i]); ^ ar rscuv ./DragonFly/libseq.a ./DragonFly/cl.o ./DragonFly/searchpath.o ./DragonFly/readline.o ./DragonFly/seq_util.o ./DragonFly/gaplib.o ./DragonFly/cmp.o ./DragonFly/profile_util.o ./DragonFly/profile_stat.o ./DragonFly/prospero_utils.o ./DragonFly/topalign.o; a - ./DragonFly/cl.o a - ./DragonFly/searchpath.o a - ./DragonFly/readline.o a - ./DragonFly/seq_util.o a - ./DragonFly/gaplib.o a - ./DragonFly/cmp.o a - ./DragonFly/profile_util.o a - ./DragonFly/profile_stat.o a - ./DragonFly/prospero_utils.o a - ./DragonFly/topalign.o cc -pipe -O2 -fno-strict-aliasing -O2 -g -DDragonFly -I./Include/ -L./DragonFly -o ./DragonFly/ariadne ariadne.c -lseq -lm -lpthread cc -pipe -O2 -fno-strict-aliasing -O2 -g -DDragonFly -I./Include/ -L./DragonFly -o ./DragonFly/prospero prospero.c -lseq -lm -lpthread prospero.c: In function 'main': prospero.c:63:3: warning: implicit declaration of function 'strcpy' [-Wimplicit-function-declaration] strcpy(matname, "blosum62"); ^ prospero.c:63:3: warning: incompatible implicit declaration of built-in function 'strcpy' prospero.c:63:3: note: include '' or provide a declaration of 'strcpy' gmake[1]: Leaving directory '/wrkdirs/biology/ariadne/SRC-1.3' =========================================================================== =================================================== =========================================================================== =================================================== ===> Staging for ariadne-1.3 ===> Generating temporary packing list install -s -m 555 /wrkdirs/biology/ariadne/SRC-1.3/DragonFly/ariadne /wrkdirs/biology/ariadne/stage/usr/local/bin install -s -m 555 /wrkdirs/biology/ariadne/SRC-1.3/DragonFly/prospero /wrkdirs/biology/ariadne/stage/usr/local/bin install -m 0644 /wrkdirs/biology/ariadne/SRC-1.3/README /wrkdirs/biology/ariadne/stage/usr/local/share/doc/ariadne ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for ariadne-1.3 file sizes/checksums [3]: . done packing files [3]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for ariadne-1.3 build of biology/ariadne ended at Wed Oct 5 05:35:44 PDT 2016 build time: 00:00:10