=> Building biology/ssaha build started at Tue Oct 4 21:03:52 PDT 2016 port directory: /usr/ports/biology/ssaha building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: ports@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../07//usr/ports/biology/ssaha/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=ssaha-3.1c_2 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/biology/ssaha XDG_CONFIG_HOME=/wrkdirs/biology/ssaha HOME=/wrkdirs/biology/ssaha TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- CCC="g++" OPTIM=" -pipe -O2 -fno-strict-aliasing" THREAD_LIB="-pthread" XDG_DATA_HOME=/wrkdirs/biology/ssaha XDG_CONFIG_HOME=/wrkdirs/biology/ssaha HOME=/wrkdirs/biology/ssaha TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="gcc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="g++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/ssaha" EXAMPLESDIR="share/examples/ssaha" DATADIR="share/ssaha" WWWDIR="www/ssaha" ETCDIR="etc/ssaha" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ssaha DOCSDIR=/usr/local/share/doc/ssaha EXAMPLESDIR=/usr/local/share/examples/ssaha WWWDIR=/usr/local/www/ssaha ETCDIR=/usr/local/etc/ssaha --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> NOTICE: The ssaha port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port =========================================================================== =================================================== ===> ssaha-3.1c_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> ssaha-3.1c_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ssaha-3.1c_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The ssaha port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by ssaha-3.1c_2 for building =========================================================================== =================================================== ===> NOTICE: The ssaha port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by ssaha-3.1c_2 for building => SHA256 Checksum OK for ssaha_v31c.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The ssaha port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by ssaha-3.1c_2 for building ===> Extracting for ssaha-3.1c_2 => SHA256 Checksum OK for ssaha_v31c.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for ssaha-3.1c_2 ===> Applying ports patches for ssaha-3.1c_2 =========================================================================== =================================================== ===> ssaha-3.1c_2 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz Installing gmake-4.2.1_1... `-- Installing indexinfo-0.2.5... `-- Extracting indexinfo-0.2.5: .... done `-- Installing gettext-runtime-0.19.8.1... `-- Extracting gettext-runtime-0.19.8.1: .......... done Extracting gmake-4.2.1_1: .......... done ===> ssaha-3.1c_2 depends on executable: gmake - found ===> Returning to build of ssaha-3.1c_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for ssaha-3.1c_2 =========================================================================== =================================================== ===> Building for ssaha-3.1c_2 gmake[1]: Entering directory '/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary' g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global/GlobalDefinitions.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable/HashTable.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable/HashTablePacked.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable/HashTableGeneric.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable/HashTableTranslated.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader/SequenceReader.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader/SequenceEncoder.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader/SequenceReaderMulti.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader/SequenceReaderFasta.cpp In file included from /usr/include/c++/5.0/backward/strstream:50:0, from /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader/SequenceReaderFasta.cpp:36: /usr/include/c++/5.0/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] #warning \ ^ g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader/SequenceReaderFastq.cpp In file included from /usr/include/c++/5.0/backward/strstream:50:0, from /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader/SequenceReaderFastq.cpp:36: /usr/include/c++/5.0/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] #warning \ ^ g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader/SequenceReaderFilter.cpp In file included from /usr/include/c++/5.0/backward/strstream:50:0, from /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader/SequenceReaderFilter.cpp:34: /usr/include/c++/5.0/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] #warning \ ^ g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager/QueryManager.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager/MatchStoreUngapped.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager/MatchStoreGapped.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager/MatchStore.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager/MatchAligner.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global/SSAHAMain.cpp g++ -c -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global/TimeStamp.cpp g++ -pipe -O2 -fno-strict-aliasing -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/../ -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//Global -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//SequenceReader -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//HashTable -I/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary/..//QueryManager -D_REENTRANT -Wl,-S -o ssaha GlobalDefinitions.o HashTable.o HashTablePacked.o HashTableGeneric.o HashTableTranslated.o SequenceReader.o SequenceEncoder.o SequenceReaderMulti.o SequenceReaderFasta.o SequenceReaderFastq.o SequenceReaderFilter.o QueryManager.o MatchStoreUngapped.o MatchStoreGapped.o MatchStore.o MatchAligner.o SSAHAMain.o TimeStamp.o gmake[1]: Leaving directory '/wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary' =========================================================================== =================================================== =========================================================================== =================================================== ===> Staging for ssaha-3.1c_2 ===> Generating temporary packing list (cd /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary && install -s -m 555 ssaha /wrkdirs/biology/ssaha/stage/usr/local/bin) (cd /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary && install -m 555 testSSAHA.csh /wrkdirs/biology/ssaha/stage/usr/local/share/ssaha) (cd /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary && install -m 0644 test.fasta /wrkdirs/biology/ssaha/stage/usr/local/share/ssaha) (cd /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary && install -m 0644 test_extract.fasta /wrkdirs/biology/ssaha/stage/usr/local/share/ssaha) (cd /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary && install -m 0644 test_filter.fail /wrkdirs/biology/ssaha/stage/usr/local/share/ssaha) (cd /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary && install -m 0644 test_filter.fastq /wrkdirs/biology/ssaha/stage/usr/local/share/ssaha) (cd /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary && install -m 0644 test_protein.fasta /wrkdirs/biology/ssaha/stage/usr/local/share/ssaha) (cd /wrkdirs/biology/ssaha/ssaha-3.1c_2/Binary && install -m 0644 README /wrkdirs/biology/ssaha/stage/usr/local/share/ssaha) ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for ssaha-3.1c_2 file sizes/checksums [8]: . done packing files [8]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for ssaha-3.1c_2 build of biology/ssaha ended at Tue Oct 4 21:04:14 PDT 2016 build time: 00:00:22