=> Building math/py-scientific build started at Tue Oct 4 03:38:30 PDT 2016 port directory: /usr/ports/math/py-scientific building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: fmysh@iijmio-mail.jp ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../07//usr/ports/math/py-scientific/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-scientific-2.8_4 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-scientific-2.8_4: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/math/py-scientific XDG_CONFIG_HOME=/wrkdirs/math/py-scientific HOME=/wrkdirs/math/py-scientific TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/math/py-scientific XDG_CONFIG_HOME=/wrkdirs/math/py-scientific HOME=/wrkdirs/math/py-scientific TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly4 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py27-scientific" EXAMPLESDIR="share/examples/py27-scientific" DATADIR="share/scientific" WWWDIR="www/scientific" ETCDIR="etc/scientific" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/scientific DOCSDIR=/usr/local/share/doc/py27-scientific EXAMPLESDIR=/usr/local/share/examples/py27-scientific WWWDIR=/usr/local/www/scientific ETCDIR=/usr/local/etc/scientific --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== =========================================================================== =================================================== ===> py27-scientific-2.8_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> py27-scientific-2.8_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-scientific-2.8_4 =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by py27-scientific-2.8_4 for building =========================================================================== =================================================== ===> Fetching all distfiles required by py27-scientific-2.8_4 for building => SHA256 Checksum OK for ScientificPython-2.8.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by py27-scientific-2.8_4 for building ===> Extracting for py27-scientific-2.8_4 => SHA256 Checksum OK for ScientificPython-2.8.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for py27-scientific-2.8_4 ===> Applying ports patches for py27-scientific-2.8_4 =========================================================================== =================================================== ===> py27-scientific-2.8_4 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - not found ===> Installing existing package /packages/All/py27-numpy-1.11.1,1.txz Installing py27-numpy-1.11.1,1... `-- Installing python27-2.7.12... | `-- Installing expat-2.2.0... | `-- Extracting expat-2.2.0: .......... done | `-- Installing readline-6.3.8... | | `-- Installing indexinfo-0.2.5... | | `-- Extracting indexinfo-0.2.5: .... done | | `-- Installing ncurses-6.0_5... | | `-- Extracting ncurses-6.0_5: .......... done | `-- Extracting readline-6.3.8: .......... done | `-- Installing libffi-3.2.1... | `-- Extracting libffi-3.2.1: .......... done | `-- Installing libressl-2.4.3... | `-- Extracting libressl-2.4.3: .......... done | `-- Installing gettext-runtime-0.19.8.1... | `-- Extracting gettext-runtime-0.19.8.1: .......... done `-- Extracting python27-2.7.12: .......... done `-- Installing py27-setuptools27-23.1.0... `-- Extracting py27-setuptools27-23.1.0: .......... done `-- Installing lapack-3.5.0... | `-- Installing blas-3.5.0_3... | | `-- Installing gcc5-5.4.0... | | `-- Installing mpc-1.0.3... | | | `-- Installing gmp-5.1.3_3... | | | `-- Extracting gmp-5.1.3_3: .......... done | | | `-- Installing mpfr-3.1.5... | | | `-- Extracting mpfr-3.1.5: .......... done | | `-- Extracting mpc-1.0.3: ...... done | | `-- Installing binutils-2.27_4,1... | | `-- Extracting binutils-2.27_4,1: .......... done | | `-- Extracting gcc5-5.4.0: .......... done | `-- Extracting blas-3.5.0_3: ....... done `-- Extracting lapack-3.5.0: .......... done `-- Installing openblas-0.2.18_1,1... `-- Extracting openblas-0.2.18_1,1: ......... done `-- Installing suitesparse-4.0.2_4... `-- Extracting suitesparse-4.0.2_4: .......... done `-- Installing cblas-1.0_4... `-- Extracting cblas-1.0_4: ......... done Extracting py27-numpy-1.11.1,1: .......... done Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from gcc5-5.4.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_4: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py27-scientific-2.8_4 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found ===> Returning to build of py27-scientific-2.8_4 ===> py27-scientific-2.8_4 depends on package: py27-setuptools27>0 - found ===> py27-scientific-2.8_4 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =================================================== ===> py27-scientific-2.8_4 depends on shared library: libnetcdf.so - not found ===> Installing existing package /packages/All/netcdf-4.4.0_2.txz Installing netcdf-4.4.0_2... `-- Installing pkgconf-1.0.1... `-- Extracting pkgconf-1.0.1: .......... done `-- Installing hdf-szip-2.1_2... `-- Extracting hdf-szip-2.1_2: ........ done `-- Installing hdf5-1.10.0... `-- Extracting hdf5-1.10.0: .......... done `-- Installing curl-7.50.3... | `-- Installing ca_root_nss-3.27... | `-- Extracting ca_root_nss-3.27: ....... done | `-- Installing krb5-1.14.4... | `-- Extracting krb5-1.14.4: .......... done `-- Extracting curl-7.50.3: .......... done Extracting netcdf-4.4.0_2: .......... done Message from ca_root_nss-3.27: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> py27-scientific-2.8_4 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> Returning to build of py27-scientific-2.8_4 =========================================================================== =================================================== ===> Configuring for py27-scientific-2.8_4 Using netCDF installation in /usr/local running config =========================================================================== =================================================== ===> Building for py27-scientific-2.8_4 Using netCDF installation in /usr/local running build running build_py creating build creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific copying Scientific/DictWithDefault.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific copying Scientific/indexing.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific copying Scientific/FFT.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific copying Scientific/NumberDict.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific copying Scientific/N.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific copying Scientific/LA.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific copying Scientific/__pkginfo__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific copying Scientific/Mathematica.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific copying Scientific/NRNG.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific copying Scientific/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Clustering copying Scientific/Clustering/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Clustering copying Scientific/Clustering/AffinityPropagation.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Clustering creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions copying Scientific/Functions/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions copying Scientific/Functions/Rational.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions copying Scientific/Functions/Interpolation.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions copying Scientific/Functions/FirstDerivatives.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions copying Scientific/Functions/Romberg.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions copying Scientific/Functions/FindRoot.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions copying Scientific/Functions/LeastSquares.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions copying Scientific/Functions/Derivatives.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions copying Scientific/Functions/Polynomial.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/Transformation.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/Quaternion.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/VectorModule.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/TensorModule.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/TensorAnalysis.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/Objects3D.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO copying Scientific/IO/NetCDF.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO copying Scientific/IO/PDB.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO copying Scientific/IO/PDBSpaceGroups.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO copying Scientific/IO/FortranFormat.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO copying Scientific/IO/ArrayIO.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO copying Scientific/IO/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO copying Scientific/IO/TextFile.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO copying Scientific/IO/PDBExportFilters.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Physics copying Scientific/Physics/Potential.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Physics copying Scientific/Physics/PhysicalQuantities.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Physics copying Scientific/Physics/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Physics creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/QtWidgets copying Scientific/QtWidgets/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/QtWidgets copying Scientific/QtWidgets/QtPlotCanvas.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/QtWidgets copying Scientific/QtWidgets/qt_fake.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/QtWidgets copying Scientific/QtWidgets/QtVisualizationCanvas.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/QtWidgets creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Statistics copying Scientific/Statistics/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Statistics copying Scientific/Statistics/Histogram.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Statistics creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Signals copying Scientific/Signals/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Signals copying Scientific/Signals/Models.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Signals creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Threading copying Scientific/Threading/TaskManager.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Threading copying Scientific/Threading/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Threading creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/TkWidgets copying Scientific/TkWidgets/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/TkWidgets copying Scientific/TkWidgets/TkVisualizationCanvas.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/TkWidgets copying Scientific/TkWidgets/TkPlotCanvas.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/TkWidgets copying Scientific/TkWidgets/Utility.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/TkWidgets creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/PyMOL.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/VRML2.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/VMD.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/VRML.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/VPython.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/Color.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/MPI copying Scientific/MPI/IO.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/MPI copying Scientific/MPI/core.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/MPI copying Scientific/MPI/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/MPI creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/DistributedComputing copying Scientific/DistributedComputing/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/DistributedComputing copying Scientific/DistributedComputing/MasterSlave.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/DistributedComputing copying Scientific/DistributedComputing/TaskManager.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/DistributedComputing creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/BSP copying Scientific/BSP/RemoteObjects.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/BSP copying Scientific/BSP/core.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/BSP copying Scientific/BSP/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/BSP copying Scientific/BSP/IO.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/BSP copying Scientific/BSP/Console.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/BSP running build_ext building 'Scientific_netcdf' extension creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Src cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -IInclude -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c Src/Scientific_netcdf.c -o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Src/Scientific_netcdf.o -DNUMPY=1 In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Src/Scientific_netcdf.c:14: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/dragonfly4 cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Src/Scientific_netcdf.o -L/usr/local/lib -L/usr/local/lib -lnetcdf -lpython2.7 -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/dragonfly4/Scientific_netcdf.so building 'Scientific_vector' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -IInclude -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c Src/Scientific_vector.c -o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Src/Scientific_vector.o -DNUMPY=1 cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Src/Scientific_vector.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/dragonfly4/Scientific_vector.so building 'Scientific_affinitypropagation' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -IInclude -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c Src/Scientific_affinitypropagation.c -o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Src/Scientific_affinitypropagation.o -DNUMPY=1 In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/oldnumeric.h:1, from Include/Scientific/arrayobject.h:2, from Src/Scientific_affinitypropagation.c:14: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Src/Scientific_affinitypropagation.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/dragonfly4/Scientific_affinitypropagation.so building 'Scientific_numerics_package_id' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -IInclude -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c Src/Scientific_numerics_package_id.c -o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Src/Scientific_numerics_package_id.o -DNUMPY=1 In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/oldnumeric.h:1, from Include/Scientific/arrayobject.h:2, from Src/Scientific_numerics_package_id.c:14: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Src/Scientific_numerics_package_id.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/dragonfly4/Scientific_numerics_package_id.so building 'Scientific_interpolation' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -IInclude -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c Src/Scientific_interpolation.c -o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Src/Scientific_interpolation.o -DNUMPY=1 In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/oldnumeric.h:1, from Include/Scientific/arrayobject.h:2, from Src/Scientific_interpolation.c:26: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Src/Scientific_interpolation.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/dragonfly4/Scientific_interpolation.so running build_scripts creating build/scripts-2.7 copying and adjusting task_manager -> build/scripts-2.7 copying and adjusting bsp_virtual -> build/scripts-2.7 changing mode of build/scripts-2.7/task_manager from 644 to 755 changing mode of build/scripts-2.7/bsp_virtual from 644 to 755 =========================================================================== =================================================== ===> py27-scientific-2.8_4 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found ===> py27-scientific-2.8_4 depends on package: py27-setuptools27>0 - found ===> py27-scientific-2.8_4 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =================================================== ===> Staging for py27-scientific-2.8_4 ===> Generating temporary packing list Using netCDF installation in /usr/local running install running build running build_py running build_ext running build_scripts running install_lib creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7 creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Mathematica.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Statistics copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Statistics/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Statistics copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Statistics/Histogram.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Statistics creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Signals copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Signals/Models.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Signals copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Signals/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Signals creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/QtWidgets/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/QtWidgets/qt_fake.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/QtWidgets/QtPlotCanvas.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/QtWidgets/QtVisualizationCanvas.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/__pkginfo__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/BSP/IO.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/BSP/Console.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/BSP/core.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/BSP/RemoteObjects.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/BSP/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/dragonfly4 copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/dragonfly4/Scientific_numerics_package_id.so -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/dragonfly4 copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/dragonfly4/Scientific_vector.so -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/dragonfly4 copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/dragonfly4/Scientific_netcdf.so -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/dragonfly4 copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/dragonfly4/Scientific_interpolation.so -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/dragonfly4 copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/dragonfly4/Scientific_affinitypropagation.so -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/dragonfly4 copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/indexing.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions/Derivatives.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions/LeastSquares.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions/FirstDerivatives.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions/FindRoot.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions/Rational.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions/Polynomial.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions/Romberg.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Functions/Interpolation.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO/NetCDF.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO/TextFile.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO/ArrayIO.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO/PDB.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO/FortranFormat.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO/PDBExportFilters.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/IO/PDBSpaceGroups.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/MPI/core.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/MPI/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/MPI/IO.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Clustering copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Clustering/AffinityPropagation.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Clustering copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Clustering/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Clustering copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/LA.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/DictWithDefault.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/DistributedComputing/MasterSlave.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/DistributedComputing/TaskManager.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/DistributedComputing/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Physics/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Physics/PhysicalQuantities.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Physics/Potential.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/TkWidgets/TkVisualizationCanvas.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/TkWidgets/Utility.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/TkWidgets/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/TkWidgets/TkPlotCanvas.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Threading copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Threading/TaskManager.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Threading copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Threading/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Threading creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry/TensorAnalysis.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry/Transformation.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry/TensorModule.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry/Objects3D.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry/Quaternion.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry/VectorModule.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Geometry/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific creating /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization/Color.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization/VPython.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization/VRML.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization/PyMOL.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization/VRML2.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization/VMD.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/Visualization/__init__.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/NRNG.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/FFT.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/N.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/Scientific/NumberDict.py -> /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Mathematica.py to Mathematica.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Statistics/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Statistics/Histogram.py to Histogram.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Signals/Models.py to Models.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Signals/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets/qt_fake.py to qt_fake.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets/QtPlotCanvas.py to QtPlotCanvas.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets/QtVisualizationCanvas.py to QtVisualizationCanvas.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/__pkginfo__.py to __pkginfo__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP/IO.py to IO.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP/Console.py to Console.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP/core.py to core.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP/RemoteObjects.py to RemoteObjects.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/indexing.py to indexing.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/Derivatives.py to Derivatives.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/LeastSquares.py to LeastSquares.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/FirstDerivatives.py to FirstDerivatives.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/FindRoot.py to FindRoot.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/Rational.py to Rational.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/Polynomial.py to Polynomial.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/Romberg.py to Romberg.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/Interpolation.py to Interpolation.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/NetCDF.py to NetCDF.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/TextFile.py to TextFile.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/ArrayIO.py to ArrayIO.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/PDB.py to PDB.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/FortranFormat.py to FortranFormat.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/PDBExportFilters.py to PDBExportFilters.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/PDBSpaceGroups.py to PDBSpaceGroups.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI/core.py to core.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI/IO.py to IO.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Clustering/AffinityPropagation.py to AffinityPropagation.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Clustering/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/LA.py to LA.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DictWithDefault.py to DictWithDefault.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing/MasterSlave.py to MasterSlave.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing/TaskManager.py to TaskManager.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics/PhysicalQuantities.py to PhysicalQuantities.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics/Potential.py to Potential.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets/TkVisualizationCanvas.py to TkVisualizationCanvas.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets/Utility.py to Utility.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets/TkPlotCanvas.py to TkPlotCanvas.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Threading/TaskManager.py to TaskManager.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Threading/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/TensorAnalysis.py to TensorAnalysis.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/Transformation.py to Transformation.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/TensorModule.py to TensorModule.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/Objects3D.py to Objects3D.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/Quaternion.py to Quaternion.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/VectorModule.py to VectorModule.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/Color.py to Color.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/VPython.py to VPython.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/VRML.py to VRML.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/PyMOL.py to PyMOL.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/VRML2.py to VRML2.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/VMD.py to VMD.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/NRNG.py to NRNG.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/FFT.py to FFT.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/N.py to N.pyc byte-compiling /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/NumberDict.py to NumberDict.pyc writing byte-compilation script '/tmp/tmpSqpjNI.py' /usr/local/bin/python2.7 -O /tmp/tmpSqpjNI.py removing /tmp/tmpSqpjNI.py running install_headers creating /wrkdirs/math/py-scientific/stage/usr/local/include/python2.7 creating /wrkdirs/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying Include/Scientific/PyMPI_API.h -> /wrkdirs/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying Include/Scientific/arrayobject.h -> /wrkdirs/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying Include/Scientific/netcdfmodule.h -> /wrkdirs/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying Include/Scientific/bspmodule.h -> /wrkdirs/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying Include/Scientific/mpimodule.h -> /wrkdirs/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying Include/Scientific/PyBSP_API.h -> /wrkdirs/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying /usr/local/include/netcdf.h -> /wrkdirs/math/py-scientific/stage/usr/local/include/python2.7/Scientific running install_egg_info running egg_info creating ScientificPython.egg-info writing ScientificPython.egg-info/PKG-INFO writing top-level names to ScientificPython.egg-info/top_level.txt writing dependency_links to ScientificPython.egg-info/dependency_links.txt writing manifest file 'ScientificPython.egg-info/SOURCES.txt' reading manifest file 'ScientificPython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'HG_CHANGESET_ID' warning: no previously-included files found matching 'Scientific/BSP/Tasks.py' writing manifest file 'ScientificPython.egg-info/SOURCES.txt' Copying ScientificPython.egg-info to /wrkdirs/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/ScientificPython-2.8-py2.7.egg-info running install_scripts copying build/scripts-2.7/task_manager -> /wrkdirs/math/py-scientific/stage/usr/local/bin copying build/scripts-2.7/bsp_virtual -> /wrkdirs/math/py-scientific/stage/usr/local/bin changing mode of /wrkdirs/math/py-scientific/stage/usr/local/bin/task_manager to 755 changing mode of /wrkdirs/math/py-scientific/stage/usr/local/bin/bsp_virtual to 755 writing list of installed files to '/wrkdirs/math/py-scientific/.PLIST.pymodtmp' install -m 0644 /wrkdirs/math/py-scientific/ScientificPython-2.8/LICENSE /wrkdirs/math/py-scientific/stage/usr/local/share/doc/py27-scientific cd /wrkdirs/math/py-scientific/ScientificPython-2.8/Doc; /usr/bin/tar -c --exclude='*~' -f - . | (cd /wrkdirs/math/py-scientific/stage/usr/local/share/doc/py27-scientific; /usr/bin/tar -xf -) cd /wrkdirs/math/py-scientific/ScientificPython-2.8/Examples; /usr/bin/tar -c --exclude='*~' -f - . | (cd /wrkdirs/math/py-scientific/stage/usr/local/share/examples/py27-scientific; /usr/bin/tar -xf -) ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for py27-scientific-2.8_4 file sizes/checksums [588]: ...... done packing files [588]: ...... done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for py27-scientific-2.8_4 build of math/py-scientific ended at Tue Oct 4 03:39:30 PDT 2016 build time: 00:01:00