=> Building math/py-pymc build started at Wed Oct 5 20:14:46 PDT 2016 port directory: /usr/ports/math/py-pymc building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: wen@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../07//usr/ports/math/py-pymc/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-pymc-2.3.6,1 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/math/py-pymc XDG_CONFIG_HOME=/wrkdirs/math/py-pymc HOME=/wrkdirs/math/py-pymc TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/math/py-pymc XDG_CONFIG_HOME=/wrkdirs/math/py-pymc HOME=/wrkdirs/math/py-pymc TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly4 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pymc" EXAMPLESDIR="share/examples/pymc" DATADIR="share/pymc" WWWDIR="www/pymc" ETCDIR="etc/pymc" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pymc DOCSDIR=/usr/local/share/doc/pymc EXAMPLESDIR=/usr/local/share/examples/pymc WWWDIR=/usr/local/www/pymc ETCDIR=/usr/local/etc/pymc --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License AFL accepted by the user =========================================================================== =================================================== ===> py27-pymc-2.3.6,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> py27-pymc-2.3.6,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-pymc-2.3.6,1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License AFL accepted by the user ===> Fetching all distfiles required by py27-pymc-2.3.6,1 for building =========================================================================== =================================================== ===> License AFL accepted by the user ===> Fetching all distfiles required by py27-pymc-2.3.6,1 for building => SHA256 Checksum OK for pymc-2.3.6.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License AFL accepted by the user ===> Fetching all distfiles required by py27-pymc-2.3.6,1 for building ===> Extracting for py27-pymc-2.3.6,1 => SHA256 Checksum OK for pymc-2.3.6.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for py27-pymc-2.3.6,1 =========================================================================== =================================================== ===> py27-pymc-2.3.6,1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - not found ===> Installing existing package /packages/All/py27-numpy-1.11.1,1.txz Installing py27-numpy-1.11.1,1... `-- Installing python27-2.7.12... | `-- Installing expat-2.2.0... | `-- Extracting expat-2.2.0: .......... done | `-- Installing readline-6.3.8... | | `-- Installing indexinfo-0.2.5... | | `-- Extracting indexinfo-0.2.5: .... done | | `-- Installing ncurses-6.0_5... | | `-- Extracting ncurses-6.0_5: .......... done | `-- Extracting readline-6.3.8: .......... done | `-- Installing libffi-3.2.1... | `-- Extracting libffi-3.2.1: .......... done | `-- Installing libressl-2.4.3... | `-- Extracting libressl-2.4.3: .......... done | `-- Installing gettext-runtime-0.19.8.1... | `-- Extracting gettext-runtime-0.19.8.1: .......... done `-- Extracting python27-2.7.12: .......... done `-- Installing py27-setuptools27-23.1.0... `-- Extracting py27-setuptools27-23.1.0: .......... done `-- Installing lapack-3.5.0... | `-- Installing blas-3.5.0_3... | | `-- Installing gcc5-5.4.0... | | `-- Installing mpc-1.0.3... | | | `-- Installing gmp-5.1.3_3... | | | `-- Extracting gmp-5.1.3_3: .......... done | | | `-- Installing mpfr-3.1.5... | | | `-- Extracting mpfr-3.1.5: .......... done | | `-- Extracting mpc-1.0.3: ...... done | | `-- Installing binutils-2.27_4,1... | | `-- Extracting binutils-2.27_4,1: .......... done | | `-- Extracting gcc5-5.4.0: .......... done | `-- Extracting blas-3.5.0_3: ....... done `-- Extracting lapack-3.5.0: .......... done `-- Installing openblas-0.2.18_1,1... `-- Extracting openblas-0.2.18_1,1: ......... done `-- Installing suitesparse-4.0.2_4... `-- Extracting suitesparse-4.0.2_4: .......... done `-- Installing cblas-1.0_4... `-- Extracting cblas-1.0_4: ......... done Extracting py27-numpy-1.11.1,1: .......... done Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from gcc5-5.4.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_4: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py27-pymc-2.3.6,1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found ===> Returning to build of py27-pymc-2.3.6,1 ===> py27-pymc-2.3.6,1 depends on package: py27-matplotlib>0 - not found ===> Installing existing package /packages/All/py27-matplotlib-1.5.0.txz Installing py27-matplotlib-1.5.0... `-- Installing libxml2-2.9.4... `-- Extracting libxml2-2.9.4: .......... done `-- Installing pango-1.38.0_1... | `-- Installing encodings-1.0.4_3,1... | | `-- Installing font-util-1.3.1... | | `-- Extracting font-util-1.3.1: .......... done | `-- Extracting encodings-1.0.4_3,1: .......... done | `-- Installing fontconfig-2.12.1,1... | | `-- Installing freetype2-2.6.3... | | `-- Extracting freetype2-2.6.3: .......... done | `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: caching, new cache contents: 0 fonts, 2 dirs /usr/local/share/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs /usr/local/share/fonts/encodings/large: caching, new cache contents: 0 fonts, 0 dirs /usr/local/share/fonts/util: caching, new cache contents: 0 fonts, 0 dirs /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | `-- Installing libXft-2.3.2_1... | | `-- Installing xproto-7.0.28... | | `-- Extracting xproto-7.0.28: .......... done | | `-- Installing libXrender-0.9.9... | | `-- Installing renderproto-0.11.1... | | `-- Extracting renderproto-0.11.1: .... done | | `-- Installing libX11-1.6.3,1... | | | `-- Installing kbproto-1.0.7... | | | `-- Extracting kbproto-1.0.7: .......... done | | | `-- Installing libXdmcp-1.1.2... | | | `-- Extracting libXdmcp-1.1.2: 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Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting trousers-0.3.13_1: .......... done | | | `-- Installing p11-kit-0.23.2... | | | `-- Extracting p11-kit-0.23.2: .......... done | | | `-- Installing libidn-1.33_1... | | | `-- Extracting libidn-1.33_1: .......... done | | `-- Extracting gnutls-3.4.15: .......... done | | `-- Installing libpaper-1.1.24.4... | | `-- Extracting libpaper-1.1.24.4: .......... done ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. | | `-- Extracting cups-2.1.4: .......... done | | `-- Installing python-2.7_2,2... | | `-- Extracting python-2.7_2,2: ..... done | `-- Extracting gtk2-2.24.29_2: .......... done | `-- Installing libglade2-2.6.4_8... | | `-- Installing xmlcatmgr-2.2_2... | | `-- Extracting xmlcatmgr-2.2_2: ......... done + Creating /usr/local/share/sgml/catalog + Registering CATALOG catalog.ports (SGML) + Creating /usr/local/share/sgml/catalog.ports + Creating /usr/local/share/xml/catalog + Registering nextCatalog catalog.ports (XML) + Creating /usr/local/share/xml/catalog.ports | `-- Extracting libglade2-2.6.4_8: .......... done `-- Extracting py27-gtk2-2.24.0_4: .......... done `-- Installing py27-tornado-4.4.1... | `-- Installing py27-certifi-2016.2.28... | `-- Extracting py27-certifi-2016.2.28: .......... done | `-- Installing py27-singledispatch-3.4.0.3... | `-- Extracting py27-singledispatch-3.4.0.3: .......... done | `-- Installing py27-backports_abc-0.4... | `-- Extracting py27-backports_abc-0.4: .......... done `-- Extracting py27-tornado-4.4.1: .......... done `-- Installing py27-pytz-2016.6.1,1... `-- Extracting py27-pytz-2016.6.1,1: .......... done Extracting py27-matplotlib-1.5.0: .......... done Message from perl5-5.20.3_15: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from dejavu-2.35: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from ca_root_nss-3.27: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.13_1: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from xmlcatmgr-2.2_2: The following catalogs are installed: 1) /usr/local/share/sgml/catalog The top level catalog for SGML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 2) /usr/local/share/sgml/catalog.ports This catalog is for handling SGML stuff installed under /usr/local/share/sgml. It is changed by ports/packages. 3) /usr/local/share/xml/catalog The top level catalog for XML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 4) /usr/local/share/xml/catalog.ports This catalog is for handling XML stuff installed under /usr/local/share/xml. It is changed by ports/packages. ===> py27-pymc-2.3.6,1 depends on package: py27-matplotlib>0 - found ===> Returning to build of py27-pymc-2.3.6,1 ===> py27-pymc-2.3.6,1 depends on package: py27-scipy>0 - not found ===> Installing existing package /packages/All/py27-scipy-0.16.1.txz Installing py27-scipy-0.16.1... `-- Installing swig13-1.3.40_1... `-- Extracting swig13-1.3.40_1: .......... done Extracting py27-scipy-0.16.1: .......... done Message from swig13-1.3.40_1: ===> NOTICE: The swig13 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py27-pymc-2.3.6,1 depends on package: py27-scipy>0 - found ===> Returning to build of py27-pymc-2.3.6,1 ===> py27-pymc-2.3.6,1 depends on package: py27-setuptools27>0 - found ===> py27-pymc-2.3.6,1 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =================================================== ===> py27-pymc-2.3.6,1 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> py27-pymc-2.3.6,1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) =========================================================================== =================================================== ===> Configuring for py27-pymc-2.3.6,1 /tmp/tmpUDJQF9/source.c: In function 'main': /tmp/tmpUDJQF9/source.c:4:13: warning: implicit declaration of function 'zungqr_' [-Wimplicit-function-declaration] zungqr_(); ^ running config =========================================================================== =================================================== ===> Building for py27-pymc-2.3.6,1 /tmp/tmptJBcI3/source.c: In function 'main': /tmp/tmptJBcI3/source.c:4:13: warning: implicit declaration of function 'zungqr_' [-Wimplicit-function-declaration] zungqr_(); ^ running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "pymc.flib" sources f2py options: ['skip:ppnd7'] f2py:> build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flibmodule.c creating build creating build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 creating build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc IOError: [Errno 2] No such file or directory: 'skip:ppnd7'. Skipping file "skip:ppnd7". updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(na)'. Ignoring. updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(nb)'. Ignoring. updatevars:gradlike: attempt to change 'dimension (nmu)' to 'dimension(nmu)'. Ignoring. updatevars:gradlike: attempt to change 'dimension (na)' to 'dimension(na)'. Ignoring. rmbadname1: Replacing "index" with "index_bn". updatevars: "character curterms(20)*24" is mapped to "character curterms(20,24)" updatevars: "character septerms(20)*24" is mapped to "character septerms(20,24)" updatevars: "character tokens(maxtok)*(*)" is mapped to "character tokens(maxtok,(*))" rmbadname1: Replacing "index" with "index_bn". rmbadname1: Replacing "len" with "len_bn". sortvarnames: failed to compute dependencies because of cyclic dependencies between n, nx, bin0, delta, x, d "object of type 'builtin_function_or_method' has no len()" in evaluating 'len(ord)' (available names: []) Reading fortran codes... Reading file 'pymc/flib.f' (format:fix,strict) Reading file 'pymc/histogram.f' (format:fix,strict) Reading file 'pymc/flib_blas.f' (format:fix,strict) Reading file 'pymc/blas_wrap.f' (format:fix,strict) Reading file 'pymc/math.f' (format:fix,strict) Reading file 'pymc/gibbsit.f' (format:fix,strict) Line #1125 in pymc/gibbsit.f:" DOUBLE PRECISION INTENT(CACHE,HIDE), DIMENSION(2*ITERACNT) :: WORK" updatevars: attempt to change the type of "work" ("integer") to "double precision". Ignoring. Post-processing... Block: flib Block: symmetrize Block: logsum Block: logsum_cpx Block: combinationln {'attrspec': ['intent(hide)']} In: :flib:pymc/flib.f:expand_triangular vars2fortran: No typespec for argument "nf". {'attrspec': ['intent(hide)']} In: :flib:pymc/flib.f:expand_triangular vars2fortran: No typespec for argument "n". Block: expand_triangular Block: mod_to_circle Block: standardize Block: gammln Block: mvgammln Block: factrl Block: factln Block: normcdf Block: sn_like Block: rskewnorm Block: uniform_like Block: uniform_grad_x Block: uniform_grad_l Block: uniform_grad_u Block: duniform_like Block: exponweib Block: exponweib_gx Block: exponweib_gl Block: exponweib_gk Block: exponweib_ga Block: exponweib_gs Block: exponweib_ppf Block: constrain Block: poisson Block: poisson_gmu Block: trpoisson Block: trpoisson_gmu Block: t Block: t_grad_x Block: t_grad_nu Block: chi2_grad_nu Block: nct Block: multinomial Block: weibull Block: weibull_gx Block: weibull_ga Block: weibull_gb Block: logistic Block: normal Block: normal_grad_tau Block: normal_grad_x Block: normal_grad_mu Block: hnormal Block: hnormal_gradx Block: hnormal_gradtau Block: lognormal Block: lognormal_gradx Block: lognormal_gradmu Block: lognormal_gradtau Block: arlognormal Block: gev Block: gev_ppf Block: gamma Block: gamma_grad_x Block: gamma_grad_alpha Block: gamma_grad_beta Block: igamma Block: igamma_grad_x Block: igamma_grad_alpha Block: igamma_grad_beta Block: hyperg Block: geometric Block: geometric_gp Block: dirichlet Block: cauchy Block: cauchy_grad_x Block: cauchy_grad_a Block: cauchy_grad_b Block: negbin Block: negbin2 Block: negbin2_gmu Block: negbin2_ga Block: binomial Block: binomial_gp Block: bernoulli Block: bern_grad_p Block: beta_like Block: beta_grad_x Block: beta_grad_a Block: beta_grad_b Block: betabin_like Block: betabin_ga Block: betabin_gb Block: mvhyperg Block: dirmultinom Block: wishart Block: trace Block: gamfun Block: gammds Block: psi Block: gser Block: gcf Block: gammq Block: trans Block: matmult Block: dtrm Block: elgs Block: bico Block: chol Block: hermpoly Block: set_uniform Block: categorical Block: rcat Block: logit Block: invlogit Block: stukel_logit Block: stukel_invlogit Block: vonmises Block: pareto Block: truncated_pareto Block: fixed_binsize Block: weighted_fixed_binsize Block: fixed_binsize_nd {'attrspec': ['dimension(n)']} In: :flib:pymc/histogram.f:qsorti vars2fortran: No typespec for argument "ord". Block: qsorti Block: checksymm Block: chol_mvnorm Block: cov_mvnorm Block: prec_mvnorm Block: blas_wishart Block: blas_wishart_cov {'attrspec': ['intent(hide)']} In: :flib:pymc/blas_wrap.f:dcopy_wrap vars2fortran: No typespec for argument "nx". Block: dcopy_wrap Block: dtrmm_wrap Block: dtrsm_wrap Block: dpotrf_wrap Block: dchdc_wrap Block: dpotrs_wrap Block: ppnd16 Block: calerf Block: derf Block: derfc Block: derfcx Block: gibbsit Block: matinput Block: vecinput Block: oneparse Block: gibbmain Block: empquant Block: dichot Block: thin Block: mctest Block: indtest Block: mcest Block: ppnd7 Block: ssort Post-processing (stage 2)... Building modules... Building module "flib"... Constructing wrapper function "symmetrize"... symmetrize(c,[cmin,cmax]) Constructing wrapper function "logsum"... s = logsum(x) Constructing wrapper function "logsum_cpx"... s = logsum_cpx(x) Creating wrapper for Fortran function "combinationln"("combinationln")... Constructing wrapper function "combinationln"... combinationln = combinationln(n,k) Constructing wrapper function "expand_triangular"... t = expand_triangular(d,f) Constructing wrapper function "mod_to_circle"... mx = mod_to_circle(x,u,l) Constructing wrapper function "standardize"... z = standardize(x,loc,scale) Creating wrapper for Fortran function "gammln"("gammln")... Constructing wrapper function "gammln"... gammln = gammln(xx) Creating wrapper for Fortran function "mvgammln"("mvgammln")... Constructing wrapper function "mvgammln"... mvgammln = mvgammln(x,k) Creating wrapper for Fortran function "factrl"("factrl")... Constructing wrapper function "factrl"... factrl = factrl(n) Creating wrapper for Fortran function "factln"("factln")... Constructing wrapper function "factln"... factln = factln(n) Constructing wrapper function "normcdf"... normcdf(x) Constructing wrapper function "sn_like"... like = sn_like(x,mu,tau,alph) Constructing wrapper function "rskewnorm"... x = rskewnorm(nx,mu,tau,alph,rn) Constructing wrapper function "uniform_like"... like = uniform_like(x,lower,upper) Constructing wrapper function "uniform_grad_x"... gradxlike = uniform_grad_x(x,lower,upper) Constructing wrapper function "uniform_grad_l"... gradllike = uniform_grad_l(x,lower,upper) Constructing wrapper function "uniform_grad_u"... gradulike = uniform_grad_u(x,lower,upper) Constructing wrapper function "duniform_like"... like = duniform_like(x,lower,upper) Constructing wrapper function "exponweib"... like = exponweib(x,a,c,loc,scale) Constructing wrapper function "exponweib_gx"... gradlike = exponweib_gx(x,alpha,k,loc,scale) Constructing wrapper function "exponweib_gl"... gradlike = exponweib_gl(x,alpha,k,loc,scale) Constructing wrapper function "exponweib_gk"... gradlike = exponweib_gk(x,alpha,k,loc,scale) Constructing wrapper function "exponweib_ga"... gradlike = exponweib_ga(x,alpha,k,loc,scale,[nk]) Constructing wrapper function "exponweib_gs"... gradlike = exponweib_gs(x,alpha,k,loc,scale) Constructing wrapper function "exponweib_ppf"... ppf = exponweib_ppf(q,a,c) Constructing wrapper function "constrain"... pass = constrain(x,a,b,allow_equal) Constructing wrapper function "poisson"... like = poisson(x,mu) Constructing wrapper function "poisson_gmu"... gradlike = poisson_gmu(x,mu) Constructing wrapper function "trpoisson"... like = trpoisson(x,mu,k) Constructing wrapper function "trpoisson_gmu"... gradlike = trpoisson_gmu(x,mu,k) Constructing wrapper function "t"... like = t(x,nu) Constructing wrapper function "t_grad_x"... gradlikex = t_grad_x(x,nu) Constructing wrapper function "t_grad_nu"... gradlikenu = t_grad_nu(x,nu) Constructing wrapper function "chi2_grad_nu"... gradlikenu = chi2_grad_nu(x,nu) Constructing wrapper function "nct"... like = nct(x,mu,lam,nu) Constructing wrapper function "multinomial"... like = multinomial(x,n,p) Constructing wrapper function "weibull"... like = weibull(x,alpha,beta) Constructing wrapper function "weibull_gx"... gradlike = weibull_gx(x,alpha,beta) Constructing wrapper function "weibull_ga"... gradlike = weibull_ga(x,alpha,beta) Constructing wrapper function "weibull_gb"... gradlike = weibull_gb(x,alpha,beta) Constructing wrapper function "logistic"... like = logistic(x,mu,tau) Constructing wrapper function "normal"... like = normal(x,mu,tau) Constructing wrapper function "normal_grad_tau"... grad_tau_like = normal_grad_tau(x,mu,tau) Constructing wrapper function "normal_grad_x"... grad_x_like = normal_grad_x(x,mu,tau) Constructing wrapper function "normal_grad_mu"... gradmulike = normal_grad_mu(x,mu,tau) Constructing wrapper function "hnormal"... like = hnormal(x,tau) Constructing wrapper function "hnormal_gradx"... gradlike = hnormal_gradx(x,tau) Constructing wrapper function "hnormal_gradtau"... gradlike = hnormal_gradtau(x,tau) Constructing wrapper function "lognormal"... like = lognormal(x,mu,tau) Constructing wrapper function "lognormal_gradx"... gradlike = lognormal_gradx(x,mu,tau) Constructing wrapper function "lognormal_gradmu"... gradlike = lognormal_gradmu(x,mu,tau) Constructing wrapper function "lognormal_gradtau"... gradlike = lognormal_gradtau(x,mu,tau) Constructing wrapper function "arlognormal"... like = arlognormal(x,mu,sigma,rho,beta) Constructing wrapper function "gev"... like = gev(x,xi,mu,sigma) Constructing wrapper function "gev_ppf"... ppf = gev_ppf(q,xi) Constructing wrapper function "gamma"... like = gamma(x,alpha,beta) Constructing wrapper function "gamma_grad_x"... gradxlike = gamma_grad_x(x,alpha,beta) Constructing wrapper function "gamma_grad_alpha"... gradalphalike = gamma_grad_alpha(x,alpha,beta) Constructing wrapper function "gamma_grad_beta"... gradbetalike = gamma_grad_beta(x,alpha,beta) Constructing wrapper function "igamma"... like = igamma(x,alpha,beta) Constructing wrapper function "igamma_grad_x"... gradxlike = igamma_grad_x(x,alpha,beta) Constructing wrapper function "igamma_grad_alpha"... gradalphalike = igamma_grad_alpha(x,alpha,beta) Constructing wrapper function "igamma_grad_beta"... gradbetalike = igamma_grad_beta(x,alpha,beta) Constructing wrapper function "hyperg"... like = hyperg(x,draws,success,total) Constructing wrapper function "geometric"... like = geometric(x,p) Constructing wrapper function "geometric_gp"... gradlike = geometric_gp(x,p) Constructing wrapper function "dirichlet"... like = dirichlet(x,theta) Constructing wrapper function "cauchy"... like = cauchy(x,alpha,beta) Constructing wrapper function "cauchy_grad_x"... gradlike = cauchy_grad_x(x,alpha,beta) Constructing wrapper function "cauchy_grad_a"... gradlike = cauchy_grad_a(x,alpha,beta) Constructing wrapper function "cauchy_grad_b"... gradlike = cauchy_grad_b(x,alpha,beta) Constructing wrapper function "negbin"... like = negbin(x,r,p) Constructing wrapper function "negbin2"... like = negbin2(x,mu,a) Constructing wrapper function "negbin2_gmu"... gradlike = negbin2_gmu(x,mu,alpha) Constructing wrapper function "negbin2_ga"... gradlike = negbin2_ga(x,mu,alpha) Constructing wrapper function "binomial"... like = binomial(x,n,p) Constructing wrapper function "binomial_gp"... gradlike = binomial_gp(x,n,p) Constructing wrapper function "bernoulli"... like = bernoulli(x,p) Constructing wrapper function "bern_grad_p"... grad_like = bern_grad_p(x,p) Constructing wrapper function "beta_like"... like = beta_like(x,alpha,beta) Constructing wrapper function "beta_grad_x"... gradlikex = beta_grad_x(x,alpha,beta) Constructing wrapper function "beta_grad_a"... gradlikea = beta_grad_a(x,alpha,beta) Constructing wrapper function "beta_grad_b"... gradlikeb = beta_grad_b(x,alpha,beta) Constructing wrapper function "betabin_like"... like = betabin_like(x,alpha,beta,n) Constructing wrapper function "betabin_ga"... gradlike = betabin_ga(x,alpha,beta,n) Constructing wrapper function "betabin_gb"... gradlike = betabin_gb(x,alpha,beta,n) Constructing wrapper function "mvhyperg"... like = mvhyperg(x,color) Constructing wrapper function "dirmultinom"... like = dirmultinom(x,theta) Constructing wrapper function "wishart"... like = wishart(x,n,sigma) Constructing wrapper function "trace"... trace(mat,tr,[k]) Constructing wrapper function "gamfun"... gx = gamfun(xx) Creating wrapper for Fortran function "gammds"("gammds")... Constructing wrapper function "gammds"... gammds = gammds(y,p,ifault) Creating wrapper for Fortran function "psi"("psi")... Constructing wrapper function "psi"... psi = psi(x) Constructing wrapper function "gser"... gser(gamser,a,x,gln) Constructing wrapper function "gcf"... gcf(gammcf,a,x,gln) Creating wrapper for Fortran function "gammq"("gammq")... Constructing wrapper function "gammq"... gammq = gammq(a,x) Constructing wrapper function "trans"... tmat = trans(mat) Constructing wrapper function "matmult"... prod = matmult(mat1,mat2) Constructing wrapper function "dtrm"... d = dtrm(a) Constructing wrapper function "elgs"... elgs(a,indx,[n]) Creating wrapper for Fortran function "bico"("bico")... Constructing wrapper function "bico"... bico = bico(n,k) Constructing wrapper function "chol"... c = chol(a,[n]) Constructing wrapper function "hermpoly"... cx = hermpoly(n,x) Constructing wrapper function "set_uniform"... set_uniform(seed1,seed2) Constructing wrapper function "categorical"... like = categorical(x,p) Constructing wrapper function "rcat"... s = rcat(p,rands) Constructing wrapper function "logit"... ltheta = logit(theta) Constructing wrapper function "invlogit"... theta = invlogit(ltheta) Constructing wrapper function "stukel_logit"... ltheta = stukel_logit(theta,a1,a2,[overwrite_theta]) Constructing wrapper function "stukel_invlogit"... theta = stukel_invlogit(ltheta,a1,a2,[overwrite_ltheta]) Constructing wrapper function "vonmises"... like = vonmises(x,mu,kappa) Constructing wrapper function "pareto"... like = pareto(x,alpha,m) Constructing wrapper function "truncated_pareto"... like = truncated_pareto(x,alpha,m,b) Constructing wrapper function "fixed_binsize"... h = fixed_binsize(x,bin0,delta,n) Constructing wrapper function "weighted_fixed_binsize"... h = weighted_fixed_binsize(x,w,bin0,delta,n) Constructing wrapper function "fixed_binsize_nd"... count = fixed_binsize_nd(x,bin0,delta,n,nc) Constructing wrapper function "qsorti"... qsorti(ord,a,[n]) Constructing wrapper function "checksymm"... cs = checksymm(x) Constructing wrapper function "chol_mvnorm"... like = chol_mvnorm(x,mu,sig,[overwrite_x,overwrite_mu]) Constructing wrapper function "cov_mvnorm"... like = cov_mvnorm(x,mu,c,[overwrite_x,overwrite_mu,overwrite_c]) Constructing wrapper function "prec_mvnorm"... like = prec_mvnorm(x,mu,tau,[overwrite_x,overwrite_mu,overwrite_tau]) Constructing wrapper function "blas_wishart"... like = blas_wishart(x,n,t,[overwrite_x,overwrite_t]) Constructing wrapper function "blas_wishart_cov"... like = blas_wishart_cov(x,n,v,[overwrite_x,overwrite_v]) Constructing wrapper function "dcopy_wrap"... dcopy_wrap(x,y) Constructing wrapper function "dtrmm_wrap"... dtrmm_wrap(a,b,side,transa,uplo,alpha) Constructing wrapper function "dtrsm_wrap"... dtrsm_wrap(a,b,side,transa,uplo,alpha) Constructing wrapper function "dpotrf_wrap"... info = dpotrf_wrap(a) Constructing wrapper function "dchdc_wrap"... piv,info = dchdc_wrap(a) Constructing wrapper function "dpotrs_wrap"... info = dpotrs_wrap(chol_fac,b,[uplo]) Creating wrapper for Fortran function "ppnd16"("ppnd16")... Constructing wrapper function "ppnd16"... ppnd16 = ppnd16(p,ifault) Constructing wrapper function "calerf"... calerf(arg,result,jint) Creating wrapper for Fortran function "derf"("derf")... Constructing wrapper function "derf"... derf = derf(x) Creating wrapper for Fortran function "derfc"("derfc")... Constructing wrapper function "derfc"... derfc = derfc(x) Creating wrapper for Fortran function "derfcx"("derfcx")... Constructing wrapper function "derfcx"... derfcx = derfcx(x) Constructing wrapper function "matinput"... matinput(uid,matout,rowused,colused,r15,[rowmax,colmax]) Constructing wrapper function "vecinput"... vecinput(uid,vecout,vecused,r15,[vecmax]) Constructing wrapper function "oneparse"... getarrdims:warning: assumed shape array, using 0 instead of '(*)' oneparse(instring,delimit,tokens,tokcnt,r15,[maxtok]) Constructing wrapper function "gibbmain"... nmin,kthin,nburn,nprec,kmind = gibbmain(original,q,r,s,epsilon) Creating wrapper for Fortran function "empquant"("empquant")... Constructing wrapper function "empquant"... getarrdims:warning: assumed shape array, using 0 instead of '*' empquant = empquant(data,q,work,[iteracnt]) Constructing wrapper function "dichot"... dichot(data,cutpt,zt,[iteracnt]) Constructing wrapper function "thin"... thin(series,kthin,result,thincnt,[iteracnt]) Constructing wrapper function "mctest"... mctest(data,g2,bic,[datacnt]) Constructing wrapper function "indtest"... indtest(data,g2,bic,[datacnt]) Constructing wrapper function "mcest"... mcest(data,alpha,beta,[datacnt]) Creating wrapper for Fortran function "ppnd7"("ppnd7")... Constructing wrapper function "ppnd7"... ppnd7 = ppnd7(p,ifault) Constructing wrapper function "ssort"... ssort(x,y,kflag,[n]) Constructing COMMON block support for "unif_seeds"... s1,s2 Wrote C/API module "flib" to file "build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flibmodule.c" Fortran 77 wrappers are saved to "build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flib-f2pywrappers.f" adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c' to sources. adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7' to include_dirs. copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.c -> build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.h -> build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. building extension "pymc.LazyFunction" sources building extension "pymc.Container_values" sources building extension "pymc.gp.linalg_utils" sources f2py options: [] f2py:> build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/linalg_utilsmodule.c creating build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp Reading fortran codes... Reading file 'pymc/gp/linalg_utils.f' (format:fix,strict) Reading file 'pymc/blas_wrap.f' (format:fix,strict) Post-processing... Block: linalg_utils Block: remove_duplicates Block: check_repeats Block: diag_call Block: cov_fun {'attrspec': ['intent(hide)']} In: :linalg_utils:pymc/gp/linalg_utils.f:basis_diag_call vars2fortran: No typespec for argument "nbas". Block: basis_diag_call Block: gp_array_logp Block: asqs {'attrspec': ['intent(hide)']} In: :linalg_utils:pymc/blas_wrap.f:dcopy_wrap vars2fortran: No typespec for argument "nx". Block: dcopy_wrap Block: dtrmm_wrap Block: dtrsm_wrap Block: dpotrf_wrap Block: dchdc_wrap Block: dpotrs_wrap Post-processing (stage 2)... Building modules... Constructing call-back function "cb_cov_fun_in_diag_call__user__routines" def cov_fun(xe): return q Building module "linalg_utils"... Constructing wrapper function "remove_duplicates"... nr,rf,rt,nu,xu,ui = remove_duplicates(x) Constructing wrapper function "check_repeats"... f,new_indices,n_new_indices = check_repeats(x,x_sofar,f_sofar) Constructing wrapper function "diag_call"... v = diag_call(x,cov_fun,[cov_fun_extra_args]) Constructing wrapper function "basis_diag_call"... v = basis_diag_call(basis_x) Constructing wrapper function "gp_array_logp"... like = gp_array_logp(x,mu,sig,[overwrite_x,overwrite_mu]) Constructing wrapper function "asqs"... asqs(c,s,[cmin,cmax]) Constructing wrapper function "dcopy_wrap"... dcopy_wrap(x,y) Constructing wrapper function "dtrmm_wrap"... dtrmm_wrap(a,b,side,transa,uplo,alpha) Constructing wrapper function "dtrsm_wrap"... dtrsm_wrap(a,b,side,transa,uplo,alpha) Constructing wrapper function "dpotrf_wrap"... info = dpotrf_wrap(a) Constructing wrapper function "dchdc_wrap"... piv,info = dchdc_wrap(a) Constructing wrapper function "dpotrs_wrap"... info = dpotrs_wrap(chol_fac,b,[uplo]) Wrote C/API module "linalg_utils" to file "build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/linalg_utilsmodule.c" adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c' to sources. adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7' to include_dirs. building extension "pymc.gp.incomplete_chol" sources f2py options: [] f2py:> build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/incomplete_cholmodule.c Reading fortran codes... Reading file 'pymc/gp/incomplete_chol.f' (format:fix,strict) Post-processing... Block: incomplete_chol Block: ichol_continue Block: rowfun Block: ichol Block: rowfun {'attrspec': ['intent(hide)']} In: :incomplete_chol:pymc/gp/incomplete_chol.f:ichol_basis vars2fortran: No typespec for argument "n_nug". Block: ichol_basis Block: ichol_full Post-processing (stage 2)... Building modules... Constructing call-back function "cb_rowfun_in_ichol_continue__user__routines" def rowfun(itot,x,rowvec): return Constructing call-back function "cb_rowfun_in_ichol__user__routines" def rowfun(i,x,rowvec): return Building module "incomplete_chol"... Constructing wrapper function "ichol_continue"... m,piv = ichol_continue(sig,diag,piv,reltol,x,rowfun,mold,[overwrite_x,rowfun_extra_args]) Constructing wrapper function "ichol"... sig,m,piv = ichol(diag,reltol,x,rowfun,rl,[overwrite_x,rowfun_extra_args]) Constructing wrapper function "ichol_basis"... sig,p,m = ichol_basis(basis,nug,reltol) Constructing wrapper function "ichol_full"... sig,m,p = ichol_full(c,reltol) Wrote C/API module "incomplete_chol" to file "build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/incomplete_cholmodule.c" adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c' to sources. adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7' to include_dirs. building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources f2py options: [] f2py:> build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c creating build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs Reading fortran codes... Reading file 'pymc/gp/cov_funs/isotropic_cov_funs.f' (format:fix,strict) Reading file 'blas/BLAS/dscal.f' (format:fix,strict) Post-processing... Block: isotropic_cov_funs Block: imul Block: symmetrize Block: matern Block: nsmatrn Block: stein_spatiotemporal Block: nsst Block: gaussian Block: exponential Block: brownian Block: frac_brownian Block: pow_exp Block: sphere Block: quadratic Block: dgamma Block: rkbesl Block: dscal Post-processing (stage 2)... Building modules... Building module "isotropic_cov_funs"... Constructing wrapper function "imul"... imul(c,a,[cmin,cmax,symm]) Constructing wrapper function "symmetrize"... symmetrize(c,[cmin,cmax]) Constructing wrapper function "matern"... matern(c,diff_degree,[cmin,cmax,symm]) Constructing wrapper function "nsmatrn"... nsmatrn(c,ddx,ddy,hx,hy,nmax,[cmin,cmax,symm]) Constructing wrapper function "stein_spatiotemporal"... stein_spatiotemporal(c,gt,origin_val,[cmin,cmax,symm]) Constructing wrapper function "nsst"... nsst(c,gt,origin_val,hx,hy,[cmin,cmax,symm]) Constructing wrapper function "gaussian"... gaussian(c,[cmin,cmax,symm]) Constructing wrapper function "exponential"... exponential(c,[cmin,cmax,symm]) Constructing wrapper function "brownian"... brownian(c,x,y,[cmin,cmax,symm]) Constructing wrapper function "frac_brownian"... frac_brownian(c,x,y,h,[cmin,cmax,symm]) Constructing wrapper function "pow_exp"... pow_exp(c,pow,[cmin,cmax,symm]) Constructing wrapper function "sphere"... sphere(c,[cmin,cmax,symm]) Constructing wrapper function "quadratic"... quadratic(c,phi,[cmin,cmax,symm]) Creating wrapper for Fortran function "dgamma"("dgamma")... Constructing wrapper function "dgamma"... dgamma = dgamma(x) Constructing wrapper function "rkbesl"... bk = rkbesl(x,alpha,nb,ize,ncalc) Constructing wrapper function "dscal"... getarrdims:warning: assumed shape array, using 0 instead of '*' dscal(n,da,dx,incx) Wrote C/API module "isotropic_cov_funs" to file "build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c" Fortran 77 wrappers are saved to "build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f" adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c' to sources. adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7' to include_dirs. adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. building extension "pymc.gp.cov_funs.distances" sources f2py options: [] f2py:> build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c Reading fortran codes... Reading file 'pymc/gp/cov_funs/distances.f' (format:fix,strict) Post-processing... Block: distances Block: euclidean Block: geographic Block: paniso_geo_rad Block: aniso_geo_rad Post-processing (stage 2)... Building modules... Building module "distances"... Constructing wrapper function "euclidean"... euclidean(d,x,y,[cmin,cmax,symm]) Constructing wrapper function "geographic"... geographic(d,x,y,[cmin,cmax,symm]) Constructing wrapper function "paniso_geo_rad"... paniso_geo_rad(d,x,y,ctrs,scals,[cmin,cmax,symm]) Constructing wrapper function "aniso_geo_rad"... aniso_geo_rad(d,x,y,inc,ecc,[cmin,cmax,symm]) Wrote C/API module "distances" to file "build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c" adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c' to sources. adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7' to include_dirs. build_src: building npy-pkg config files running build_py creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/datatypes.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/threadpool.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/NumpyDeterministics.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/graph.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/utils.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/NormalApproximation.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/ScipyDistributions.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/six.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/decorators.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/progressbar.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/Node.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/InstantiationDecorators.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/Model.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/StepMethods.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/calc_utils.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/PyMCObjects.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/Container.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/CommonDeterministics.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/MCMC.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/Matplot.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/diagnostics.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/CircularStochastic.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc copying pymc/distributions.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database copying pymc/database/ram.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database copying pymc/database/hdf5.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database copying pymc/database/no_trace.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database copying pymc/database/sqlite.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database copying pymc/database/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database copying pymc/database/hdf5ea.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database copying pymc/database/base.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database copying pymc/database/txt.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database copying pymc/database/pickle.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples copying pymc/examples/weibull_fit_gof.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples copying pymc/examples/disaster_model_linear.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples copying pymc/examples/custom_step.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples copying pymc/examples/disaster_model_gof.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples copying pymc/examples/disaster_model.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples copying pymc/examples/disaster_model_null.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples copying pymc/examples/gelman_bioassay.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples copying pymc/examples/disaster_model_missing.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples copying pymc/examples/weibull_fit.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples copying pymc/examples/zip.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples copying pymc/examples/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples copying pymc/examples/melanoma.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples copying pymc/examples/melanoma_data.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/observation.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/cov.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/MCMC.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/PyMCmodel.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/basiscov.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/mesh_choice.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/covparams.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/realizations.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/mean.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_instantiation.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_missing.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_AM.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_distributions.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_basiscov.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_observation.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_binary_step.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_graph.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/objectmodel.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_convergence.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_adaptive.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_interactive.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_slice.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_realization.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_cov.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_gradients.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_utils.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_GP_MCMC.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_container.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_database.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_special_methods.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_MCMCSampler.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_mean.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests copying pymc/tests/test_norm_approx.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp copying pymc/gp/step_methods.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp copying pymc/gp/NearlyFullRankCovariance.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp copying pymc/gp/Covariance.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp copying pymc/gp/FullRankCovariance.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp copying pymc/gp/Mean.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp copying pymc/gp/gpplots.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp copying pymc/gp/Realization.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp copying pymc/gp/gp_submodel.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp copying pymc/gp/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp copying pymc/gp/BasisCovariance.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp copying pymc/gp/GPutils.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp creating build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs copying pymc/gp/cov_funs/brownian.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs copying pymc/gp/cov_funs/nsmatern.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs copying pymc/gp/cov_funs/__init__.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs copying pymc/gp/cov_funs/cov_utils.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs copying pymc/gp/cov_funs/bases.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs copying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext resetting extension 'pymc.flib' language from 'c' to 'f77'. resetting extension 'pymc.gp.linalg_utils' language from 'c' to 'f77'. resetting extension 'pymc.gp.incomplete_chol' language from 'c' to 'f77'. resetting extension 'pymc.gp.cov_funs.isotropic_cov_funs' language from 'c' to 'f77'. resetting extension 'pymc.gp.cov_funs.distances' language from 'c' to 'f77'. customize GnuFCompiler Found executable /usr/local/bin/gfortran5 gnu: no Fortran 90 compiler found Could not locate executable cc -shared gnu: no Fortran 90 compiler found customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'pymc.flib' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/cephes creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: cephes/i0.c cephes/i0.c: In function 'cephes_i0': cephes/i0.c:372:30: warning: passing argument 2 of 'chbevl' from incompatible pointer type [-Wincompatible-pointer-types] return( exp(x) * chbevl( y, A, 30 ) ); ^ cephes/i0.c:355:15: note: expected 'double *' but argument is of type 'short unsigned int *' extern double chbevl ( double, double *, int ); ^ cephes/i0.c:375:41: warning: passing argument 2 of 'chbevl' from incompatible pointer type [-Wincompatible-pointer-types] return( exp(x) * chbevl( 32.0/x - 2.0, B, 25 ) / sqrt(x) ); ^ cephes/i0.c:355:15: note: expected 'double *' but argument is of type 'short unsigned int *' extern double chbevl ( double, double *, int ); ^ cephes/i0.c: In function 'cephes_i0e': cephes/i0.c:392:21: warning: passing argument 2 of 'chbevl' from incompatible pointer type [-Wincompatible-pointer-types] return( chbevl( y, A, 30 ) ); ^ cephes/i0.c:355:15: note: expected 'double *' but argument is of type 'short unsigned int *' extern double chbevl ( double, double *, int ); ^ cephes/i0.c:395:32: warning: passing argument 2 of 'chbevl' from incompatible pointer type [-Wincompatible-pointer-types] return( chbevl( 32.0/x - 2.0, B, 25 ) / sqrt(x) ); ^ cephes/i0.c:355:15: note: expected 'double *' but argument is of type 'short unsigned int *' extern double chbevl ( double, double *, int ); ^ cc: build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flibmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.h:13, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flibmodule.c:19: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc: cephes/chbevl.c cc: build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.h:13, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c:2: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc: cephes/c2f.c compiling Fortran sources Fortran f77 compiler: /usr/local/bin/gfortran5 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran5 -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran5 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' gfortran5:f77: pymc/flib.f f951: Warning: Nonconforming tab character in column 1 of line 509 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 510 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 511 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 512 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 513 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 557 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 558 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 559 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 560 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 561 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 707 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 711 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 715 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 723 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 775 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 779 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 783 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 791 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 849 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 853 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 857 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 865 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 921 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 925 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 929 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 937 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 991 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 995 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 999 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 1007 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 1195 [-Wtabs] f951: 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Warning: Nonconforming tab character in column 1 of line 4634 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4635 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4637 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4638 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4639 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4640 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4642 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4643 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4644 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4645 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4646 [-Wtabs] pymc/flib.f:316:55: DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like 1 Warning: Unused variable 'd_now' declared at (1) [-Wunused-variable] pymc/flib.f:314:42: INTEGER i, nx, nalph, nmu, ntau, tnx 1 Warning: Unused variable 'tnx' declared at (1) [-Wunused-variable] pymc/flib.f:442:71: subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) 1 Warning: Unused dummy argument 'gradxlike' at (1) [-Wunused-dummy-argument] pymc/flib.f:461:40: DOUBLE PRECISION like, low, high 1 Warning: Unused variable 'high' declared at (1) [-Wunused-variable] pymc/flib.f:458:36: INTEGER n, nlower, nupper, i 1 Warning: Unused variable 'i' declared at (1) [-Wunused-variable] pymc/flib.f:461:29: DOUBLE PRECISION like, low, high 1 Warning: Unused variable 'like' declared at (1) [-Wunused-variable] pymc/flib.f:461:34: DOUBLE PRECISION like, low, high 1 Warning: Unused variable 'low' declared at (1) [-Wunused-variable] pymc/flib.f:442:39: subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) 1 Warning: Unused dummy argument 'lower' at (1) [-Wunused-dummy-argument] pymc/flib.f:442:45: subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) 1 Warning: Unused dummy argument 'upper' at (1) [-Wunused-dummy-argument] pymc/flib.f:442:33: subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) 1 Warning: Unused dummy argument 'x' at (1) [-Wunused-dummy-argument] pymc/flib.f:692:41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable] pymc/flib.f:760:41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable] pymc/flib.f:834:41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable] pymc/flib.f:906:41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable] pymc/flib.f:976:41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable] pymc/flib.f:1186:29: DOUBLE PRECISION factln 1 Warning: Unused variable 'factln' declared at (1) [-Wunused-variable] pymc/flib.f:1185:51: DOUBLE PRECISION sumx, mut, infinity, sumfact 1 Warning: Unused variable 'sumfact' declared at (1) [-Wunused-variable] pymc/flib.f:1185:27: DOUBLE PRECISION sumx, mut, infinity, sumfact 1 Warning: Unused variable 'sumx' declared at (1) [-Wunused-variable] pymc/flib.f:1300:55: DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf 1 Warning: Unused variable 'cdf' declared at (1) [-Wunused-variable] pymc/flib.f:1302:29: DOUBLE PRECISION factln, gammq 1 Warning: Unused variable 'factln' declared at (1) [-Wunused-variable] pymc/flib.f:1302:36: DOUBLE PRECISION factln, gammq 1 Warning: Unused variable 'gammq' declared at (1) [-Wunused-variable] pymc/flib.f:1301:59: DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf 1 Warning: Unused variable 'sumcdf' declared at (1) [-Wunused-variable] pymc/flib.f:1301:51: DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf 1 Warning: Unused variable 'sumfact' declared at (1) [-Wunused-variable] pymc/flib.f:1301:27: DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf 1 Warning: Unused variable 'sumx' declared at (1) [-Wunused-variable] pymc/flib.f:1402:29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:2154:40: DOUBLE PRECISION gradlike(n), grad 1 Warning: Unused variable 'grad' declared at (1) [-Wunused-variable] pymc/flib.f:2665:29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:2728:29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:2793:29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:2903:29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:2959:29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:3021:29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:3396:58: DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike 1 Warning: Unused variable 'glike' declared at (1) [-Wunused-variable] pymc/flib.f:3646:37: DOUBLE PRECISION gammln, factln 1 Warning: Unused variable 'factln' declared at (1) [-Wunused-variable] pymc/flib.f:3646:29: DOUBLE PRECISION gammln, factln 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:3706:37: DOUBLE PRECISION gammln, factln, psi 1 Warning: Unused variable 'factln' declared at (1) [-Wunused-variable] pymc/flib.f:3706:29: DOUBLE PRECISION gammln, factln, psi 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:3836:29: DOUBLE PRECISION factln 1 Warning: Unused variable 'factln' declared at (1) [-Wunused-variable] pymc/flib.f:4039:26: DOUBLE PRECISION psi 1 Warning: Unused variable 'psi' declared at (1) [-Wunused-variable] pymc/flib.f:4266:29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:4332:29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:5184:35: DOUBLE PRECISION like, factln, infinity, sump 1 Warning: Unused variable 'factln' declared at (1) [-Wunused-variable] pymc/flib.f:5186:23: INTEGER i,j,n_tmp 1 Warning: Unused variable 'n_tmp' declared at (1) [-Wunused-variable] pymc/flib.f:5434:26: DOUBLE PRECISION tmp 1 Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable] pymc/flib.f:5488:25: DOUBLE PRECISION i0 1 Warning: Unused variable 'i0' declared at (1) [-Wunused-variable] pymc/flib.f:5481:26: DOUBLE PRECISION tmp 1 Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable] pymc/flib.f:5535:25: DOUBLE PRECISION i0 1 Warning: Unused variable 'i0' declared at (1) [-Wunused-variable] pymc/flib.f:5528:26: DOUBLE PRECISION tmp 1 Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable] pymc/flib.f:4882:0: K = I ^ Warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] pymc/flib.f:778:0: do i = 1,nc ^ Warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] pymc/flib.f:994:0: do i = 1,nc ^ Warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] gfortran5:f77: pymc/histogram.f gfortran5:f77: pymc/flib_blas.f pymc/flib_blas.f:202:25: DOUBLE PRECISION PI 1 Warning: Unused variable 'pi' declared at (1) [-Wunused-variable] gfortran5:f77: pymc/blas_wrap.f gfortran5:f77: pymc/math.f pymc/math.f:396:6: DOUBLE PRECISION FUNCTION DERF(X) 1 Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow] pymc/math.f:417:6: DOUBLE PRECISION FUNCTION DERFC(X) 1 Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow] gfortran5:f77: pymc/gibbsit.f pymc/gibbsit.f:2160:5: 215 IF (R .GT. .5898437) GO TO 220 1 Warning: Label 215 at (1) defined but not used pymc/gibbsit.f:2077:5: 115 IF (R .GT. .5898437) GO TO 120 1 Warning: Label 115 at (1) defined but not used pymc/gibbsit.f:2064:5: 15 IF (KFLAG.GE.1) GO TO 30 1 Warning: Label 15 at (1) defined but not used pymc/gibbsit.f:1204:48: cutpt = empquant(original,iteracnt,qhat,work) 1 Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) gfortran5:f77: build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flib-f2pywrappers.f /usr/local/bin/gfortran5 -Wall -g -shared build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/cephes/i0.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/cephes/c2f.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/cephes/chbevl.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flibmodule.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flib.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/histogram.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flib_blas.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/blas_wrap.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/math.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gibbsit.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/lib -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0 -L/usr/local/lib -lopenblas -lopenblas -lpython2.7 -lgfortran -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flib.so building 'pymc.LazyFunction' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: pymc/LazyFunction.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from pymc/LazyFunction.c:255: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/LazyFunction.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/LazyFunction.so building 'pymc.Container_values' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: pymc/Container_values.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from pymc/Container_values.c:254: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/Container_values.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/Container_values.so building 'pymc.gp.linalg_utils' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/linalg_utilsmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.h:13, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/linalg_utilsmodule.c:19: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc: build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.h:13, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c:2: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ compiling Fortran sources Fortran f77 compiler: /usr/local/bin/gfortran5 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran5 -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran5 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' gfortran5:f77: pymc/gp/linalg_utils.f pymc/gp/linalg_utils.f:151:56: SUBROUTINE gp_array_logp(x, mu, sig, n, like, info) 1 Warning: Unused dummy argument 'info' at (1) [-Wunused-dummy-argument] gfortran5:f77: pymc/blas_wrap.f /usr/local/bin/gfortran5 -Wall -g -shared build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/linalg_utilsmodule.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/linalg_utils.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/blas_wrap.o -L/usr/local/lib -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0 -L/usr/local/lib -lopenblas -lopenblas -lpython2.7 -lgfortran -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/linalg_utils.so building 'pymc.gp.incomplete_chol' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/incomplete_cholmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.h:13, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/incomplete_cholmodule.c:19: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc: build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.h:13, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c:2: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ compiling Fortran sources Fortran f77 compiler: /usr/local/bin/gfortran5 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran5 -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran5 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' gfortran5:f77: pymc/gp/incomplete_chol.f /usr/local/bin/gfortran5 -Wall -g -shared build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/incomplete_cholmodule.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/incomplete_chol.o -L/usr/local/lib -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0 -L/usr/local/lib -lopenblas -lopenblas -lpython2.7 -lgfortran -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/incomplete_chol.so building 'pymc.gp.cov_funs.isotropic_cov_funs' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.h:13, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c:2: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc: build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.h:13, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c:19: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ compiling Fortran sources Fortran f77 compiler: /usr/local/bin/gfortran5 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran5 -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran5 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/blas creating build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/blas/BLAS compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' gfortran5:f77: pymc/gp/cov_funs/isotropic_cov_funs.f pymc/gp/cov_funs/isotropic_cov_funs.f:940:6: DOUBLE PRECISION FUNCTION DGAMMA(X) 1 Warning: 'dgamma' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow] pymc/gp/cov_funs/isotropic_cov_funs.f:124:11: fl = DINT(diff_degree) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] pymc/gp/cov_funs/isotropic_cov_funs.f:209:14: h=hx(i)*hy(j) 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] pymc/gp/cov_funs/isotropic_cov_funs.f:236:19: fl = DINT(diff_degree) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] pymc/gp/cov_funs/isotropic_cov_funs.f:257:14: h=hx(i)*hy(j) 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] pymc/gp/cov_funs/isotropic_cov_funs.f:265:16: h=hx(i)*hy(j) 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] pymc/gp/cov_funs/isotropic_cov_funs.f:286:19: fl = DINT(diff_degree) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] pymc/gp/cov_funs/isotropic_cov_funs.f:1336:0: INTEGER I,IEND,ITEMP,IZE,J,K,M,MPLUS1,NB,NCALC ^ Warning: 'itemp' may be used uninitialized in this function [-Wmaybe-uninitialized] gfortran5:f77: blas/BLAS/dscal.f gfortran5:f77: build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f /usr/local/bin/gfortran5 -Wall -g -shared build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/blas/BLAS/dscal.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.o -L/usr/local/lib -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0 -L/usr/local/lib -lopenblas -lopenblas -lpython2.7 -lgfortran -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs.so building 'pymc.gp.cov_funs.distances' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.h:13, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c:2: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc: build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.h:13, from build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c:19: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ compiling Fortran sources Fortran f77 compiler: /usr/local/bin/gfortran5 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran5 -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran5 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' gfortran5:f77: pymc/gp/cov_funs/distances.f pymc/gp/cov_funs/distances.f:138:24: theta = DATAN2(dlat/a,dlon/a)/pi 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /usr/local/bin/gfortran5 -Wall -g -shared build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.o build/temp.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/distances.o -L/usr/local/lib -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0 -L/usr/local/lib -lopenblas -lopenblas -lpython2.7 -lgfortran -o build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/distances.so =========================================================================== =================================================== ===> py27-pymc-2.3.6,1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found ===> py27-pymc-2.3.6,1 depends on package: py27-matplotlib>0 - found ===> py27-pymc-2.3.6,1 depends on package: py27-scipy>0 - found ===> py27-pymc-2.3.6,1 depends on package: py27-setuptools27>0 - found ===> py27-pymc-2.3.6,1 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =================================================== ===> Staging for py27-pymc-2.3.6,1 ===> Generating temporary packing list /tmp/tmpjdwm5x/source.c: In function 'main': /tmp/tmpjdwm5x/source.c:4:13: warning: implicit declaration of function 'zungqr_' [-Wimplicit-function-declaration] zungqr_(); ^ running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "pymc.flib" sources f2py options: ['skip:ppnd7'] adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c' to sources. adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7' to include_dirs. adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. building extension "pymc.LazyFunction" sources building extension "pymc.Container_values" sources building extension "pymc.gp.linalg_utils" sources f2py options: [] adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c' to sources. adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7' to include_dirs. building extension "pymc.gp.incomplete_chol" sources f2py options: [] adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c' to sources. adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7' to include_dirs. building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources f2py options: [] adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c' to sources. adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7' to include_dirs. adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. building extension "pymc.gp.cov_funs.distances" sources f2py options: [] adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/fortranobject.c' to sources. adding 'build/src.dragonfly-4.7-DEVELOPMENT-x86_64-2.7' to include_dirs. build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext resetting extension 'pymc.flib' language from 'c' to 'f77'. resetting extension 'pymc.gp.linalg_utils' language from 'c' to 'f77'. resetting extension 'pymc.gp.incomplete_chol' language from 'c' to 'f77'. resetting extension 'pymc.gp.cov_funs.isotropic_cov_funs' language from 'c' to 'f77'. resetting extension 'pymc.gp.cov_funs.distances' language from 'c' to 'f77'. customize GnuFCompiler Found executable /usr/local/bin/gfortran5 gnu: no Fortran 90 compiler found Could not locate executable cc -shared gnu: no Fortran 90 compiler found customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using build_ext running install_lib creating /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7 creating /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages creating /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/flib.so -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/NormalApproximation.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc creating /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_basiscov.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_graph.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_distributions.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_binary_step.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_cov.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_norm_approx.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_special_methods.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_adaptive.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/objectmodel.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_missing.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_convergence.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_observation.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_utils.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_slice.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_gradients.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_container.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_MCMCSampler.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_GP_MCMC.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_AM.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_interactive.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_mean.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_instantiation.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_realization.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/__init__.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/tests/test_database.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/StepMethods.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/MCMC.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/utils.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/Matplot.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/graph.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/Container.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/Node.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/ScipyDistributions.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/CommonDeterministics.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/CircularStochastic.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/InstantiationDecorators.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc creating /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database/base.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database/txt.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database/__init__.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database/sqlite.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database/pickle.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database/no_trace.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database/hdf5.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database/ram.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/database/hdf5ea.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/calc_utils.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/datatypes.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/Model.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/distributions.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/PyMCObjects.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc creating /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/linalg_utils.so -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/gp_submodel.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/__init__.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/Realization.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp creating /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/distances.so -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/nsmatern.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/wrapped_distances.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/brownian.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/cov_utils.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/__init__.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/bases.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs.so -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/FullRankCovariance.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/NearlyFullRankCovariance.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/Covariance.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/step_methods.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/gpplots.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/Mean.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/BasisCovariance.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/GPutils.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/gp/incomplete_chol.so -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/diagnostics.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/NumpyDeterministics.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/threadpool.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/six.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/__init__.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/progressbar.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc creating /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/zip.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/__init__.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/disaster_model_null.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/custom_step.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/melanoma_data.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gelman_bioassay.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/disaster_model_missing.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/disaster_model_gof.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/weibull_fit.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/disaster_model_linear.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/disaster_model.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/melanoma.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples creating /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp/cov.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp/observation.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp/__init__.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp/mesh_choice.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp/realizations.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp/covparams.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp/mean.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp/MCMC.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp/PyMCmodel.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/gp/basiscov.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/examples/weibull_fit_gof.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/decorators.py -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/Container_values.so -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-4.7-DEVELOPMENT-x86_64-2.7/pymc/LazyFunction.so -> /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/NormalApproximation.py to NormalApproximation.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_basiscov.py to test_basiscov.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_graph.py to test_graph.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_distributions.py to test_distributions.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_binary_step.py to test_binary_step.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_cov.py to test_cov.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_norm_approx.py to test_norm_approx.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_special_methods.py to test_special_methods.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_adaptive.py to test_adaptive.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/objectmodel.py to objectmodel.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_missing.py to test_missing.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_convergence.py to test_convergence.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_observation.py to test_observation.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_utils.py to test_utils.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_slice.py to test_slice.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_gradients.py to test_gradients.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_container.py to test_container.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_MCMCSampler.py to test_MCMCSampler.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_GP_MCMC.py to test_GP_MCMC.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_AM.py to test_AM.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_interactive.py to test_interactive.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_mean.py to test_mean.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_instantiation.py to test_instantiation.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_realization.py to test_realization.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_database.py to test_database.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/StepMethods.py to StepMethods.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/MCMC.py to MCMC.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/utils.py to utils.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/Matplot.py to Matplot.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/graph.py to graph.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/Container.py to Container.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/Node.py to Node.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/ScipyDistributions.py to ScipyDistributions.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/CommonDeterministics.py to CommonDeterministics.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/CircularStochastic.py to CircularStochastic.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/InstantiationDecorators.py to InstantiationDecorators.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/base.py to base.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/txt.py to txt.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/sqlite.py to sqlite.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/pickle.py to pickle.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/no_trace.py to no_trace.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/hdf5.py to hdf5.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/ram.py to ram.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/hdf5ea.py to hdf5ea.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/calc_utils.py to calc_utils.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/datatypes.py to datatypes.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/Model.py to Model.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/distributions.py to distributions.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/PyMCObjects.py to PyMCObjects.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/gp_submodel.py to gp_submodel.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/Realization.py to Realization.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/nsmatern.py to nsmatern.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/wrapped_distances.py to wrapped_distances.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/brownian.py to brownian.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/cov_utils.py to cov_utils.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/__init__.py to __init__.pyc 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weibull_fit_gof.pyc byte-compiling /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/decorators.py to decorators.pyc writing byte-compilation script '/tmp/tmpS0pZ2j.py' /usr/local/bin/python2.7 -O /tmp/tmpS0pZ2j.py removing /tmp/tmpS0pZ2j.py running install_egg_info running egg_info creating pymc.egg-info writing pymc.egg-info/PKG-INFO writing top-level names to pymc.egg-info/top_level.txt writing dependency_links to pymc.egg-info/dependency_links.txt writing manifest file 'pymc.egg-info/SOURCES.txt' reading manifest file 'pymc.egg-info/SOURCES.txt' writing manifest file 'pymc.egg-info/SOURCES.txt' Copying pymc.egg-info to /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc-2.3.6-py2.7.egg-info running install_scripts running install_clib customize UnixCCompiler writing list of installed files to '/wrkdirs/math/py-pymc/.PLIST.pymodtmp' /usr/bin/strip /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/flib.so /usr/bin/strip /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/distances.so /usr/bin/strip /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/isotropic_cov_funs.so /usr/bin/strip /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/incomplete_chol.so /usr/bin/strip /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/linalg_utils.so /usr/bin/strip /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/Container_values.so /usr/bin/strip /wrkdirs/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/LazyFunction.so ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for py27-pymc-2.3.6,1 file sizes/checksums [308]: .... done packing files [308]: .... done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for py27-pymc-2.3.6,1 build of math/py-pymc ended at Wed Oct 5 20:18:48 PDT 2016 build time: 00:04:02