=> Building science/libctl build started at Tue Oct 4 04:37:15 PDT 2016 port directory: /usr/ports/science/libctl building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: devel@stasyan.com ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../04//usr/ports/science/libctl/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=libctl-3.2.2 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for libctl-3.2.2: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples NLOPT=off: Use NLopt, an external NonLinear OPTimizer ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --enable-shared --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/science/libctl XDG_CONFIG_HOME=/wrkdirs/science/libctl HOME=/wrkdirs/science/libctl TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/science/libctl XDG_CONFIG_HOME=/wrkdirs/science/libctl HOME=/wrkdirs/science/libctl TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib -lm -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/libctl" EXAMPLESDIR="share/examples/libctl" DATADIR="share/libctl" WWWDIR="www/libctl" ETCDIR="etc/libctl" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libctl DOCSDIR=/usr/local/share/doc/libctl EXAMPLESDIR=/usr/local/share/examples/libctl WWWDIR=/usr/local/www/libctl ETCDIR=/usr/local/etc/libctl --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> libctl-3.2.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> libctl-3.2.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libctl-3.2.2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libctl-3.2.2 for building =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libctl-3.2.2 for building => SHA256 Checksum OK for libctl-3.2.2.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libctl-3.2.2 for building ===> Extracting for libctl-3.2.2 => SHA256 Checksum OK for libctl-3.2.2.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for libctl-3.2.2 =========================================================================== =================================================== ===> libctl-3.2.2 depends on executable: gfortran5 - not found ===> Installing existing package /packages/All/gcc5-5.4.0.txz Installing gcc5-5.4.0... `-- Installing indexinfo-0.2.5... `-- Extracting indexinfo-0.2.5: .... done `-- Installing mpc-1.0.3... | `-- Installing gmp-5.1.3_3... | `-- Extracting gmp-5.1.3_3: .......... done | `-- Installing mpfr-3.1.5... | `-- Extracting mpfr-3.1.5: .......... done `-- Extracting mpc-1.0.3: ...... done `-- Installing binutils-2.27_4,1... | `-- Installing gettext-runtime-0.19.8.1... | `-- Extracting gettext-runtime-0.19.8.1: .......... done `-- Extracting binutils-2.27_4,1: .......... done Extracting gcc5-5.4.0: .......... done Message from gcc5-5.4.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> libctl-3.2.2 depends on executable: gfortran5 - found ===> Returning to build of libctl-3.2.2 ===> libctl-3.2.2 depends on package: pkgconf>=0.9.10 - not found ===> Installing existing package /packages/All/pkgconf-1.0.1.txz Installing pkgconf-1.0.1... Extracting pkgconf-1.0.1: .......... done ===> libctl-3.2.2 depends on package: pkgconf>=0.9.10 - found ===> Returning to build of libctl-3.2.2 ===> libctl-3.2.2 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== ===> libctl-3.2.2 depends on shared library: libguile-2.0.so - not found ===> Installing existing package /packages/All/guile2-2.0.11_3.txz Installing guile2-2.0.11_3... `-- Installing libffi-3.2.1... `-- Extracting libffi-3.2.1: .......... done `-- Installing libltdl-2.4.6... `-- Extracting libltdl-2.4.6: .......... done `-- Installing boehm-gc-threaded-7.6.0_1... | `-- Installing boehm-gc-7.6.0... | `-- Extracting boehm-gc-7.6.0: .......... done `-- Extracting boehm-gc-threaded-7.6.0_1: .......... done `-- Installing libunistring-0.9.6... `-- Extracting libunistring-0.9.6: .......... done `-- Installing readline-6.3.8... | `-- Installing ncurses-6.0_5... | `-- Extracting ncurses-6.0_5: .......... done `-- Extracting readline-6.3.8: .......... done Extracting guile2-2.0.11_3: .......... done Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> libctl-3.2.2 depends on shared library: libguile-2.0.so - found (/usr/local/lib/libguile-2.0.so) ===> Returning to build of libctl-3.2.2 =========================================================================== =================================================== ===> Configuring for libctl-3.2.2 configure: loading site script /usr/ports/Templates/config.site checking whether to enable maintainer-specific portions of Makefiles... no checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-portbld-dragonfly4.7 checking host system type... x86_64-portbld-dragonfly4.7 checking how to print strings... printf checking for style of include used by make... GNU checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking how to convert x86_64-portbld-dragonfly4.7 file names to x86_64-portbld-dragonfly4.7 format... func_convert_file_noop checking how to convert x86_64-portbld-dragonfly4.7 file names to toolchain format... func_convert_file_noop checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from cc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly4.7 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) cc checking whether we are using the GNU C compiler... (cached) yes checking whether cc accepts -g... (cached) yes checking for cc option to accept ISO C89... (cached) none needed checking whether cc understands -c and -o together... (cached) yes checking dependency style of cc... (cached) gcc3 checking for indent... indent checking for ANSI C header files... (cached) yes checking for guile... guile checking for guile-config... guile-config checking if linking to guile works... yes checking libguile.h usability... yes checking libguile.h presence... yes checking for libguile.h... yes checking guile/gh.h usability... no checking guile/gh.h presence... no checking for guile/gh.h... no checking for modern non-gh interface... yes checking for gh_enter... no checking for gh_eval_str... no checking for gh_load... no checking for gh_bool2scm... no checking for gh_vector_ref... no checking for gh_list_ref... no checking for gh_length... no checking for scm_flush_all_ports... yes checking for scm_make_complex... yes checking for scm_c_make_rectangular... yes checking for scm_variable_set_x... yes checking for scm_c_lookup... yes checking for scm_c_make_vector... yes checking for scm_variable_ref... yes checking for SCM_COMPLEXP... yes checking whether gh_lookup works properly... no checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran5 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran5 option to produce PIC... -fPIC checking if gfortran5 PIC flag -fPIC works... yes checking if gfortran5 static flag -static works... no checking if gfortran5 supports -c -o file.o... yes checking if gfortran5 supports -c -o file.o... (cached) yes checking whether the gfortran5 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly4.7 ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from gfortran5... -v checking for Fortran 77 libraries of gfortran5... -L/usr/local/lib -L/usr/local/lib/gcc5 -L/usr/local/bin -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0 -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0/../../../../../x86_64-portbld-dragonfly4.7/lib -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0/../../.. -lgfortran -lm -lguile-2.0 -lgc-threaded -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for C complex keyword... complex checking for egrep... (cached) /usr/bin/egrep checking nlopt.h usability... no checking nlopt.h presence... no checking for nlopt.h... no checking for basename in -lgen... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating utils/Makefile config.status: creating examples/Makefile config.status: creating examples/example.scm config.status: creating utils/gen-ctl-io config.status: creating config.h config.status: creating src/ctl.h config.status: executing depfiles commands config.status: executing libtool commands =========================================================================== =================================================== ===> Building for libctl-3.2.2 --- all --- /usr/bin/make all-recursive --- all-recursive --- Making all in src --- all --- /usr/bin/make all-am --- ctl.lo --- --- subplex.lo --- --- ctl-f77-glue.lo --- --- integrator.lo --- --- cintegrator.lo --- --- ctl.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT ctl.lo -MD -MP -MF .deps/ctl.Tpo -c -o ctl.lo ctl.c --- subplex.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT subplex.lo -MD -MP -MF .deps/subplex.Tpo -c -o subplex.lo subplex.c --- ctl-f77-glue.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT ctl-f77-glue.lo -MD -MP -MF .deps/ctl-f77-glue.Tpo -c -o ctl-f77-glue.lo ctl-f77-glue.c --- integrator.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT integrator.lo -MD -MP -MF .deps/integrator.Tpo -c -o integrator.lo integrator.c --- cintegrator.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT cintegrator.lo -MD -MP -MF .deps/cintegrator.Tpo -c -o cintegrator.lo cintegrator.c --- ctl-f77-glue.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT ctl-f77-glue.lo -MD -MP -MF .deps/ctl-f77-glue.Tpo -c ctl-f77-glue.c -fPIC -DPIC -o .libs/ctl-f77-glue.o --- subplex.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT subplex.lo -MD -MP -MF .deps/subplex.Tpo -c subplex.c -fPIC -DPIC -o .libs/subplex.o --- ctl.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT ctl.lo -MD -MP -MF .deps/ctl.Tpo -c ctl.c -fPIC -DPIC -o .libs/ctl.o --- cintegrator.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT cintegrator.lo -MD -MP -MF .deps/cintegrator.Tpo -c cintegrator.c -fPIC -DPIC -o .libs/cintegrator.o --- integrator.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT integrator.lo -MD -MP -MF .deps/integrator.Tpo -c integrator.c -fPIC -DPIC -o .libs/integrator.o --- ctl-f77-glue.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT ctl-f77-glue.lo -MD -MP -MF .deps/ctl-f77-glue.Tpo -c ctl-f77-glue.c -o ctl-f77-glue.o >/dev/null 2>&1 --- integrator.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT integrator.lo -MD -MP -MF .deps/integrator.Tpo -c integrator.c -o integrator.o >/dev/null 2>&1 --- ctl-f77-glue.lo --- mv -f .deps/ctl-f77-glue.Tpo .deps/ctl-f77-glue.Plo --- ctl.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT ctl.lo -MD -MP -MF .deps/ctl.Tpo -c ctl.c -o ctl.o >/dev/null 2>&1 --- integrator.lo --- mv -f .deps/integrator.Tpo .deps/integrator.Plo --- cintegrator.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT cintegrator.lo -MD -MP -MF .deps/cintegrator.Tpo -c cintegrator.c -o cintegrator.o >/dev/null 2>&1 --- ctl.lo --- mv -f .deps/ctl.Tpo .deps/ctl.Plo --- subplex.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT subplex.lo -MD -MP -MF .deps/subplex.Tpo -c subplex.c -o subplex.o >/dev/null 2>&1 --- cintegrator.lo --- mv -f .deps/cintegrator.Tpo .deps/cintegrator.Plo --- subplex.lo --- mv -f .deps/subplex.Tpo .deps/subplex.Plo --- libctl.la --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -no-undefined -version-info 5:2:0 -L/usr/local/lib -lm -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -o libctl.la -rpath /usr/local/lib ctl.lo subplex.lo ctl-f77-glue.lo integrator.lo cintegrator.lo -L/usr/local/lib -lguile-2.0 -lgc-threaded libtool: link: cc -shared -fPIC -DPIC .libs/ctl.o .libs/subplex.o .libs/ctl-f77-glue.o .libs/integrator.o .libs/cintegrator.o -L/usr/local/lib -lm -L/usr/local/lib/gcc5 -lguile-2.0 -lgc-threaded -O2 -Wl,-rpath=/usr/local/lib/gcc5 -B/usr/local/bin -Wl,-soname -Wl,libctl.so.5 -o .libs/libctl.so.5.0.2 libtool: link: (cd ".libs" && rm -f "libctl.so.5" && ln -s "libctl.so.5.0.2" "libctl.so.5") libtool: link: (cd ".libs" && rm -f "libctl.so" && ln -s "libctl.so.5.0.2" "libctl.so") libtool: link: /usr/local/bin/ar cru .libs/libctl.a ctl.o subplex.o ctl-f77-glue.o integrator.o cintegrator.o /usr/local/bin/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: /usr/local/bin/ranlib .libs/libctl.a libtool: link: ( cd ".libs" && rm -f "libctl.la" && ln -s "../libctl.la" "libctl.la" ) Making all in utils --- ctl-io.h --- --- ctl-io.c --- --- ctl-io.h --- /wrkdirs/science/libctl/libctl-3.2.2/utils/gen-ctl-io --header -o ctl-io.h ./geom.scm .. --- ctl-io.c --- /wrkdirs/science/libctl/libctl-3.2.2/utils/gen-ctl-io --code -o ctl-io.c ./geom.scm .. --- ctl-io.h --- ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /wrkdirs/science/libctl/libctl-3.2.2/utils/../base/include.scm ;;; compiled /wrkdirs/science/libctl/.cache/guile/ccache/2.0-LE-8-2.0/wrkdirs/science/libctl/libctl-3.2.2/base/include.scm.go --- ctlgeom-types.h --- cp -f ctl-io.h ctlgeom-types.h --- ctl-io.c --- ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /wrkdirs/science/libctl/libctl-3.2.2/utils/../base/include.scm ;;; compiled /wrkdirs/science/libctl/.cache/guile/ccache/2.0-LE-8-2.0/wrkdirs/science/libctl/libctl-3.2.2/base/include.scm.go --- geom-ctl-io.c --- sed 's,/.* Input variables .*/,@#include "geom-ctl-io-defaults.c"@#if 0@,;s,/.* Output variables .*/,#endif@,' ctl-io.c | tr '@' '\n' > geom-ctl-io.c --- all --- /usr/bin/make all-am --- geom.lo --- --- geomtst.o --- --- geom-ctl-io.lo --- --- geom.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT geom.lo -MD -MP -MF .deps/geom.Tpo -c -o geom.lo geom.c --- geom-ctl-io.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT geom-ctl-io.lo -MD -MP -MF .deps/geom-ctl-io.Tpo -c -o geom-ctl-io.lo geom-ctl-io.c --- geomtst.o --- cc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT geomtst.o -MD -MP -MF .deps/geomtst.Tpo -c -o geomtst.o geomtst.c --- geom.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT geom.lo -MD -MP -MF .deps/geom.Tpo -c geom.c -fPIC -DPIC -o .libs/geom.o --- geom-ctl-io.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT geom-ctl-io.lo -MD -MP -MF .deps/geom-ctl-io.Tpo -c geom-ctl-io.c -fPIC -DPIC -o .libs/geom-ctl-io.o --- geomtst.o --- mv -f .deps/geomtst.Tpo .deps/geomtst.Po --- geom-ctl-io.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT geom-ctl-io.lo -MD -MP -MF .deps/geom-ctl-io.Tpo -c geom-ctl-io.c -o geom-ctl-io.o >/dev/null 2>&1 mv -f .deps/geom-ctl-io.Tpo .deps/geom-ctl-io.Plo --- geom.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT geom.lo -MD -MP -MF .deps/geom.Tpo -c geom.c -o geom.o >/dev/null 2>&1 mv -f .deps/geom.Tpo .deps/geom.Plo --- libctlgeom.la --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -version-info 5:2:0 ../src/libctl.la -L/usr/local/lib -lm -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -o libctlgeom.la -rpath /usr/local/lib geom.lo geom-ctl-io.lo -L/usr/local/lib -lguile-2.0 -lgc-threaded libtool: link: cc -shared -fPIC -DPIC .libs/geom.o .libs/geom-ctl-io.o -Wl,-rpath -Wl,/wrkdirs/science/libctl/libctl-3.2.2/src/.libs -Wl,-rpath -Wl,/usr/local/lib ../src/.libs/libctl.so -L/usr/local/lib -L/usr/local/lib/gcc5 -lm -lguile-2.0 -lgc-threaded -O2 -Wl,-rpath=/usr/local/lib/gcc5 -B/usr/local/bin -Wl,-soname -Wl,libctlgeom.so.5 -o .libs/libctlgeom.so.5.0.2 libtool: link: (cd ".libs" && rm -f "libctlgeom.so.5" && ln -s "libctlgeom.so.5.0.2" "libctlgeom.so.5") libtool: link: (cd ".libs" && rm -f "libctlgeom.so" && ln -s "libctlgeom.so.5.0.2" "libctlgeom.so") libtool: link: /usr/local/bin/ar cru .libs/libctlgeom.a geom.o geom-ctl-io.o /usr/local/bin/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: /usr/local/bin/ranlib .libs/libctlgeom.a libtool: link: ( cd ".libs" && rm -f "libctlgeom.la" && ln -s "../libctlgeom.la" "libctlgeom.la" ) --- geomtst --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -L/usr/local/lib -lm -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -o geomtst geomtst.o libctlgeom.la ../src/libctl.la -L/usr/local/lib -lguile-2.0 -lgc-threaded libtool: link: cc -pipe -O2 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -B/usr/local/bin -o .libs/geomtst geomtst.o -L/usr/local/lib -L/usr/local/lib/gcc5 ./.libs/libctlgeom.so /wrkdirs/science/libctl/libctl-3.2.2/src/.libs/libctl.so ../src/.libs/libctl.so -lm -lguile-2.0 -lgc-threaded -Wl,-rpath -Wl,/usr/local/lib Making all in examples --- main.c --- --- geom.c --- --- ctl-io.c --- --- ctl-io.h --- --- main.c --- cp -f /wrkdirs/science/libctl/libctl-3.2.2/./base/main.c main.c --- geom.c --- cp -f /wrkdirs/science/libctl/libctl-3.2.2/./utils/geom.c geom.c --- ctl-io.c --- /wrkdirs/science/libctl/libctl-3.2.2/utils/gen-ctl-io --code -o ctl-io.c example.scm /wrkdirs/science/libctl/libctl-3.2.2/. --- ctl-io.h --- /wrkdirs/science/libctl/libctl-3.2.2/utils/gen-ctl-io --header -o ctl-io.h example.scm /wrkdirs/science/libctl/libctl-3.2.2/. --- all --- /usr/bin/make all-am --- example-example.o --- --- example-main.o --- --- example-geom.o --- --- example-ctl-io.o --- --- example-example.o --- cc -DHAVE_CONFIG_H -I. -I.. -I../src -DCTL_SCM='"'/wrkdirs/science/libctl/libctl-3.2.2/./base/ctl.scm'"' -DINCLUDE_SCM='"'/wrkdirs/science/libctl/libctl-3.2.2/./base/include.scm'"' -DSPEC_SCM='"'/usr/local/share/libctl/example.scm'"' -DVERSION_STRING='"'"example 3.2.2"'"' -I../utils -I../src -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT example-example.o -MD -MP -MF .deps/example-example.Tpo -c -o example-example.o `test -f 'example.c' || echo './'`example.c --- example-main.o --- cc -DHAVE_CONFIG_H -I. -I.. -I../src -DCTL_SCM='"'/wrkdirs/science/libctl/libctl-3.2.2/./base/ctl.scm'"' -DINCLUDE_SCM='"'/wrkdirs/science/libctl/libctl-3.2.2/./base/include.scm'"' -DSPEC_SCM='"'/usr/local/share/libctl/example.scm'"' -DVERSION_STRING='"'"example 3.2.2"'"' -I../utils -I../src -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT example-main.o -MD -MP -MF .deps/example-main.Tpo -c -o example-main.o `test -f 'main.c' || echo './'`main.c --- example-geom.o --- cc -DHAVE_CONFIG_H -I. -I.. -I../src -DCTL_SCM='"'/wrkdirs/science/libctl/libctl-3.2.2/./base/ctl.scm'"' -DINCLUDE_SCM='"'/wrkdirs/science/libctl/libctl-3.2.2/./base/include.scm'"' -DSPEC_SCM='"'/usr/local/share/libctl/example.scm'"' -DVERSION_STRING='"'"example 3.2.2"'"' -I../utils -I../src -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT example-geom.o -MD -MP -MF .deps/example-geom.Tpo -c -o example-geom.o `test -f 'geom.c' || echo './'`geom.c --- example-ctl-io.o --- cc -DHAVE_CONFIG_H -I. -I.. -I../src -DCTL_SCM='"'/wrkdirs/science/libctl/libctl-3.2.2/./base/ctl.scm'"' -DINCLUDE_SCM='"'/wrkdirs/science/libctl/libctl-3.2.2/./base/include.scm'"' -DSPEC_SCM='"'/usr/local/share/libctl/example.scm'"' -DVERSION_STRING='"'"example 3.2.2"'"' -I../utils -I../src -I/usr/local/include/guile/2.0 -I/usr/local/include -pthread -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT example-ctl-io.o -MD -MP -MF .deps/example-ctl-io.Tpo -c -o example-ctl-io.o `test -f 'ctl-io.c' || echo './'`ctl-io.c --- example-example.o --- mv -f .deps/example-example.Tpo .deps/example-example.Po --- example-main.o --- mv -f .deps/example-main.Tpo .deps/example-main.Po --- example-ctl-io.o --- mv -f .deps/example-ctl-io.Tpo .deps/example-ctl-io.Po --- example-geom.o --- mv -f .deps/example-geom.Tpo .deps/example-geom.Po --- example --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -L/usr/local/lib -lm -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -o example example-example.o example-main.o example-geom.o example-ctl-io.o ../src/libctl.la -L/usr/local/lib -lguile-2.0 -lgc-threaded libtool: link: cc -pipe -O2 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -B/usr/local/bin -o .libs/example example-example.o example-main.o example-geom.o example-ctl-io.o -L/usr/local/lib -L/usr/local/lib/gcc5 ../src/.libs/libctl.so -lm -lguile-2.0 -lgc-threaded -Wl,-rpath -Wl,/usr/local/lib =========================================================================== =================================================== ===> libctl-3.2.2 depends on executable: gfortran5 - found =========================================================================== =================================================== ===> Staging for libctl-3.2.2 ===> Generating temporary packing list Making install in src /usr/bin/make install-am /bin/mkdir -p '/wrkdirs/science/libctl/stage/usr/local/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libctl.la '/wrkdirs/science/libctl/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libctl.so.5.0.2 /wrkdirs/science/libctl/stage/usr/local/lib/libctl.so.5.0.2 libtool: install: (cd /wrkdirs/science/libctl/stage/usr/local/lib && { ln -s -f libctl.so.5.0.2 libctl.so.5 || { rm -f libctl.so.5 && ln -s libctl.so.5.0.2 libctl.so.5; }; }) libtool: install: (cd /wrkdirs/science/libctl/stage/usr/local/lib && { ln -s -f libctl.so.5.0.2 libctl.so || { rm -f libctl.so && ln -s libctl.so.5.0.2 libctl.so; }; }) libtool: install: /usr/bin/install -c .libs/libctl.lai /wrkdirs/science/libctl/stage/usr/local/lib/libctl.la libtool: install: /usr/bin/install -c .libs/libctl.a /wrkdirs/science/libctl/stage/usr/local/lib/libctl.a libtool: install: chmod 644 /wrkdirs/science/libctl/stage/usr/local/lib/libctl.a libtool: install: /usr/local/bin/ranlib /wrkdirs/science/libctl/stage/usr/local/lib/libctl.a libtool: install: warning: remember to run `libtool --finish /usr/local/lib' /bin/mkdir -p '/wrkdirs/science/libctl/stage/usr/local/include' install -m 0644 ctl.h '/wrkdirs/science/libctl/stage/usr/local/include' Making install in utils /usr/bin/make install-am /bin/mkdir -p '/wrkdirs/science/libctl/stage/usr/local/bin' install -m 555 gen-ctl-io '/wrkdirs/science/libctl/stage/usr/local/bin' /bin/mkdir -p '/wrkdirs/science/libctl/stage/usr/local/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libctlgeom.la '/wrkdirs/science/libctl/stage/usr/local/lib' libtool: install: warning: relinking `libctlgeom.la' libtool: install: (cd /wrkdirs/science/libctl/libctl-3.2.2/utils; /bin/sh /wrkdirs/science/libctl/libctl-3.2.2/libtool --tag CC --mode=relink cc -pipe -O2 -fno-strict-aliasing -version-info 5:2:0 ../src/libctl.la -L/usr/local/lib -lm -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -o libctlgeom.la -rpath /usr/local/lib geom.lo geom-ctl-io.lo -L/usr/local/lib -lguile-2.0 -lgc-threaded -inst-prefix-dir /wrkdirs/science/libctl/stage) libtool: relink: cc -shared -fPIC -DPIC .libs/geom.o .libs/geom-ctl-io.o -Wl,-rpath -Wl,/usr/local/lib ../src/.libs/libctl.so -L/usr/local/lib -L/usr/local/lib/gcc5 -lm -lguile-2.0 -lgc-threaded -O2 -Wl,-rpath=/usr/local/lib/gcc5 -B/usr/local/bin -Wl,-soname -Wl,libctlgeom.so.5 -o .libs/libctlgeom.so.5.0.2 libtool: install: /usr/bin/install -c .libs/libctlgeom.so.5.0.2T /wrkdirs/science/libctl/stage/usr/local/lib/libctlgeom.so.5.0.2 libtool: install: (cd /wrkdirs/science/libctl/stage/usr/local/lib && { ln -s -f libctlgeom.so.5.0.2 libctlgeom.so.5 || { rm -f libctlgeom.so.5 && ln -s libctlgeom.so.5.0.2 libctlgeom.so.5; }; }) libtool: install: (cd /wrkdirs/science/libctl/stage/usr/local/lib && { ln -s -f libctlgeom.so.5.0.2 libctlgeom.so || { rm -f libctlgeom.so && ln -s libctlgeom.so.5.0.2 libctlgeom.so; }; }) libtool: install: /usr/bin/install -c .libs/libctlgeom.lai /wrkdirs/science/libctl/stage/usr/local/lib/libctlgeom.la libtool: install: /usr/bin/install -c .libs/libctlgeom.a /wrkdirs/science/libctl/stage/usr/local/lib/libctlgeom.a libtool: install: chmod 644 /wrkdirs/science/libctl/stage/usr/local/lib/libctlgeom.a libtool: install: /usr/local/bin/ranlib /wrkdirs/science/libctl/stage/usr/local/lib/libctlgeom.a libtool: install: warning: remember to run `libtool --finish /usr/local/lib' /bin/mkdir -p '/wrkdirs/science/libctl/stage/usr/local/include' install -m 0644 ctlgeom.h '/wrkdirs/science/libctl/stage/usr/local/include' /bin/mkdir -p '/wrkdirs/science/libctl/stage/usr/local/man/man1' install -m 0644 gen-ctl-io.1 '/wrkdirs/science/libctl/stage/usr/local/man/man1' /bin/mkdir -p '/wrkdirs/science/libctl/stage/usr/local/include' install -m 0644 ctlgeom-types.h '/wrkdirs/science/libctl/stage/usr/local/include' Making install in examples /usr/bin/make install-am /bin/mkdir -p '/wrkdirs/science/libctl/stage/usr/local/share/libctl' /bin/mkdir -p '/wrkdirs/science/libctl/stage/usr/local/share/libctl/base' install -m 0644 base/class.scm base/ctl.scm base/extern-funcs.scm base/help.scm base/include.scm base/interaction.scm base/io-vars.scm base/math-utils.scm base/matrix3x3.scm base/simplex.scm base/utils.scm base/vector3.scm base/main.c '/wrkdirs/science/libctl/stage/usr/local/share/libctl/base' /bin/mkdir -p '/wrkdirs/science/libctl/stage/usr/local/share/libctl/utils' install -m 0644 utils/ctl-io.scm utils/geom.c utils/geom.scm utils/nlopt-constants.scm utils/nlopt.c '/wrkdirs/science/libctl/stage/usr/local/share/libctl/utils' /bin/cp -R /wrkdirs/science/libctl/libctl-3.2.2/doc/ /wrkdirs/science/libctl/stage/usr/local/share/doc/libctl /bin/cp -R /wrkdirs/science/libctl/libctl-3.2.2/examples/ /wrkdirs/science/libctl/stage/usr/local/share/examples/libctl ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for libctl-3.2.2 file sizes/checksums [64]: . done packing files [64]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for libctl-3.2.2 build of science/libctl ended at Tue Oct 4 04:38:27 PDT 2016 build time: 00:01:12