=> Building science/h5utils build started at Wed Oct 5 17:19:59 PDT 2016 port directory: /usr/ports/science/h5utils building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: aehlig@linta.de ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../10//usr/ports/science/h5utils/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=h5utils-1.12.1_6 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/science/h5utils XDG_CONFIG_HOME=/wrkdirs/science/h5utils HOME=/wrkdirs/science/h5utils TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/science/h5utils XDG_CONFIG_HOME=/wrkdirs/science/h5utils HOME=/wrkdirs/science/h5utils TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/h5utils" EXAMPLESDIR="share/examples/h5utils" DATADIR="share/h5utils" WWWDIR="www/h5utils" ETCDIR="etc/h5utils" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/h5utils DOCSDIR=/usr/local/share/doc/h5utils EXAMPLESDIR=/usr/local/share/examples/h5utils WWWDIR=/usr/local/www/h5utils ETCDIR=/usr/local/etc/h5utils --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License MIT GPLv2 accepted by the user =========================================================================== =================================================== ===> h5utils-1.12.1_6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> h5utils-1.12.1_6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of h5utils-1.12.1_6 =========================================================================== =================================================== =========================================================================== =================================================== ===> License MIT GPLv2 accepted by the user ===> Fetching all distfiles required by h5utils-1.12.1_6 for building =========================================================================== =================================================== ===> License MIT GPLv2 accepted by the user ===> Fetching all distfiles required by h5utils-1.12.1_6 for building => SHA256 Checksum OK for h5utils-1.12.1.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License MIT GPLv2 accepted by the user ===> Fetching all distfiles required by h5utils-1.12.1_6 for building ===> Extracting for h5utils-1.12.1_6 => SHA256 Checksum OK for h5utils-1.12.1.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for h5utils-1.12.1_6 ===> Applying ports patches for h5utils-1.12.1_6 =========================================================================== =================================================== ===> h5utils-1.12.1_6 depends on executable: gawk - not found ===> Installing existing package /packages/All/gawk-4.1.4.txz Installing gawk-4.1.4... `-- Installing indexinfo-0.2.5... `-- Extracting indexinfo-0.2.5: .... done `-- Installing readline-6.3.8... | `-- Installing ncurses-6.0_5... | `-- Extracting ncurses-6.0_5: .......... done `-- Extracting readline-6.3.8: .......... done `-- Installing libsigsegv-2.10_1... `-- Extracting libsigsegv-2.10_1: ..... done `-- Installing gettext-runtime-0.19.8.1... `-- Extracting gettext-runtime-0.19.8.1: .......... done Extracting gawk-4.1.4: .......... done Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from libsigsegv-2.10_1: ==== Note that the stackoverflow handling functions of this library need procfs mounted on /proc. ==== ===> h5utils-1.12.1_6 depends on executable: gawk - found ===> Returning to build of h5utils-1.12.1_6 =========================================================================== =================================================== ===> h5utils-1.12.1_6 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.10.0.txz Installing hdf5-1.10.0... `-- Installing hdf-szip-2.1_2... `-- Extracting hdf-szip-2.1_2: ........ done Extracting hdf5-1.10.0: .......... done ===> h5utils-1.12.1_6 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of h5utils-1.12.1_6 ===> h5utils-1.12.1_6 depends on shared library: libpng.so - not found ===> Installing existing package /packages/All/png-1.6.23.txz Installing png-1.6.23... Extracting png-1.6.23: .......... done ===> h5utils-1.12.1_6 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> Returning to build of h5utils-1.12.1_6 ===> h5utils-1.12.1_6 depends on shared library: libmatheval.so - not found ===> Installing existing package /packages/All/libmatheval-1.1.11_2.txz Installing libmatheval-1.1.11_2... `-- Installing guile-1.8.8_2... | `-- Installing gmp-5.1.3_3... | `-- Extracting gmp-5.1.3_3: .......... done | `-- Installing libltdl-2.4.6... | `-- Extracting libltdl-2.4.6: .......... done `-- Extracting guile-1.8.8_2: .......... done Extracting libmatheval-1.1.11_2: ....... done ===> h5utils-1.12.1_6 depends on shared library: libmatheval.so - found (/usr/local/lib/libmatheval.so) ===> Returning to build of h5utils-1.12.1_6 =========================================================================== =================================================== ===> Configuring for h5utils-1.12.1_6 configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking whether cc understands -c and -o together... yes checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sin in -lm... yes checking for snprintf... (cached) yes checking for inflate in -lz... yes checking for png_create_write_struct in -lpng... yes checking for evaluator_get_variables in -lmatheval... yes checking for h4toh5... no checking for h5toh4... no checking for jpeg_start_compress in -ljpeg... no configure: WARNING: can't find libjpeg: won't be able to compile h5fromh4 or h4fromh5 checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking hdf.h usability... no checking hdf.h presence... no checking for hdf.h... no checking hdf/hdf.h usability... no checking hdf/hdf.h presence... no checking for hdf/hdf.h... no checking for H5Fopen in -lhdf5... yes checking for mkoctfile... no configure: WARNING: can't find mkoctfile: won't be able to compile h5read.oct checking for v5dCreate in -lv5d... no checking vis5d/v5d.h usability... no checking vis5d/v5d.h presence... no checking for vis5d/v5d.h... no checking vis5d+/v5d.h usability... no checking vis5d+/v5d.h presence... no checking for vis5d+/v5d.h... no checking for arpa/inet.h... (cached) yes checking for netinet/in.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking for uint16_t... yes checking for uint32_t... yes checking for htons... yes checking size of float... 4 checking for htonl... yes configure: creating ./config.status config.status: creating Makefile config.status: creating h5topng.1 config.status: creating config.h config.status: executing depfiles commands =========================================================================== =================================================== ===> Building for h5utils-1.12.1_6 --- all --- /usr/bin/make all-am --- h5totxt.o --- --- arrayh5.o --- --- h5utils.o --- --- h5fromtxt.o --- --- h5tovtk.o --- --- h5totxt.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5totxt.o -MD -MP -MF .deps/h5totxt.Tpo -c -o h5totxt.o h5totxt.c --- arrayh5.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT arrayh5.o -MD -MP -MF .deps/arrayh5.Tpo -c -o arrayh5.o arrayh5.c --- h5utils.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5utils.o -MD -MP -MF .deps/h5utils.Tpo -c -o h5utils.o h5utils.c --- h5fromtxt.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5fromtxt.o -MD -MP -MF .deps/h5fromtxt.Tpo -c -o h5fromtxt.o h5fromtxt.c --- h5tovtk.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5tovtk.o -MD -MP -MF .deps/h5tovtk.Tpo -c -o h5tovtk.o h5tovtk.c mv -f .deps/h5tovtk.Tpo .deps/h5tovtk.Po --- h5math.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5math.o -MD -MP -MF .deps/h5math.Tpo -c -o h5math.o h5math.c --- h5utils.o --- mv -f .deps/h5utils.Tpo .deps/h5utils.Po --- h5topng.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5topng.o -MD -MP -MF .deps/h5topng.Tpo -c -o h5topng.o h5topng.c --- h5totxt.o --- mv -f .deps/h5totxt.Tpo .deps/h5totxt.Po --- writepng.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT writepng.o -MD -MP -MF .deps/writepng.Tpo -c -o writepng.o writepng.c --- h5fromtxt.o --- mv -f .deps/h5fromtxt.Tpo .deps/h5fromtxt.Po --- h5fromitxt.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5fromitxt.o -MD -MP -MF .deps/h5fromitxt.Tpo -c -o h5fromitxt.o h5fromitxt.c --- arrayh5.o --- mv -f .deps/arrayh5.Tpo .deps/arrayh5.Po --- h5fromtxt --- cc -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -o h5fromtxt h5fromtxt.o arrayh5.o h5utils.o -lhdf5 -lz -lm --- h5totxt --- cc -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -o h5totxt h5totxt.o arrayh5.o h5utils.o -lhdf5 -lz -lm --- h5tovtk --- cc -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -o h5tovtk h5tovtk.o arrayh5.o h5utils.o -lhdf5 -lz -lm --- h5fromitxt.o --- mv -f .deps/h5fromitxt.Tpo .deps/h5fromitxt.Po --- h5fromitxt --- cc -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -o h5fromitxt h5fromitxt.o arrayh5.o h5utils.o -lhdf5 -lz -lm --- h5math.o --- mv -f .deps/h5math.Tpo .deps/h5math.Po --- h5math --- cc -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -o h5math h5math.o arrayh5.o h5utils.o -lmatheval -lhdf5 -lz -lm --- writepng.o --- mv -f .deps/writepng.Tpo .deps/writepng.Po --- h5topng.o --- mv -f .deps/h5topng.Tpo .deps/h5topng.Po --- h5topng --- cc -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -o h5topng h5topng.o writepng.o arrayh5.o h5utils.o -lpng -lhdf5 -lz -lm =========================================================================== =================================================== =========================================================================== =================================================== ===> Staging for h5utils-1.12.1_6 ===> Generating temporary packing list test -z "/usr/local/bin" || /bin/mkdir -p "/wrkdirs/science/h5utils/stage/usr/local/bin" install -s -m 555 h5totxt h5fromtxt h5tovtk h5math h5topng '/wrkdirs/science/h5utils/stage/usr/local/bin' test -z "/usr/local/man/man1" || /bin/mkdir -p "/wrkdirs/science/h5utils/stage/usr/local/man/man1" install -m 0644 h5totxt.1 h5fromtxt.1 h5tovtk.1 h5math.1 h5topng.1 '/wrkdirs/science/h5utils/stage/usr/local/man/man1' test -z "/usr/local/share/h5utils" || /bin/mkdir -p "/wrkdirs/science/h5utils/stage/usr/local/share/h5utils" /bin/mkdir -p '/wrkdirs/science/h5utils/stage/usr/local/share/h5utils/colormaps' install -m 0644 colormaps/autumn colormaps/bluered colormaps/bone colormaps/colorcube colormaps/cool colormaps/copper colormaps/flag colormaps/gray colormaps/green colormaps/hot colormaps/hsv colormaps/jet colormaps/lines colormaps/pink colormaps/prism colormaps/spring colormaps/summer colormaps/vga colormaps/winter colormaps/yarg colormaps/yellow colormaps/dkbluered '/wrkdirs/science/h5utils/stage/usr/local/share/h5utils/colormaps' test -z "" || /bin/mkdir -p "/wrkdirs/science/h5utils/stage" ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for h5utils-1.12.1_6 file sizes/checksums [36]: . done packing files [36]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for h5utils-1.12.1_6 build of science/h5utils ended at Wed Oct 5 17:20:14 PDT 2016 build time: 00:00:15