=> Building science/dlpoly-classic build started at Wed Oct 5 17:01:42 PDT 2016 port directory: /usr/ports/science/dlpoly-classic building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: bacon4000@gmail.com ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../10//usr/ports/science/dlpoly-classic/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=dlpolyclassic-1.8_10 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for dlpolyclassic-1.8_10: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples GUI=on: Install Java GUI ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" MAKE=gmake XDG_DATA_HOME=/wrkdirs/science/dlpoly-classic XDG_CONFIG_HOME=/wrkdirs/science/dlpoly-classic HOME=/wrkdirs/science/dlpoly-classic TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/science/dlpoly-classic XDG_CONFIG_HOME=/wrkdirs/science/dlpoly-classic HOME=/wrkdirs/science/dlpoly-classic TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/dlpoly" EXAMPLESDIR="share/examples/dlpoly" DATADIR="share/dlpoly" WWWDIR="www/dlpoly" ETCDIR="etc/dlpoly" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/dlpoly DOCSDIR=/usr/local/share/doc/dlpoly EXAMPLESDIR=/usr/local/share/examples/dlpoly WWWDIR=/usr/local/www/dlpoly ETCDIR=/usr/local/etc/dlpoly --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== =========================================================================== =================================================== ===> dlpolyclassic-1.8_10 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> dlpolyclassic-1.8_10 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of dlpolyclassic-1.8_10 =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by dlpolyclassic-1.8_10 for building =========================================================================== =================================================== ===> Fetching all distfiles required by dlpolyclassic-1.8_10 for building => SHA256 Checksum OK for dl_class_1.8.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by dlpolyclassic-1.8_10 for building ===> Extracting for dlpolyclassic-1.8_10 => SHA256 Checksum OK for dl_class_1.8.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for dlpolyclassic-1.8_10 /bin/cp /wrkdirs/science/dlpoly-classic/dl_class_1.8/build/MakePAR /wrkdirs/science/dlpoly-classic/dl_class_1.8/build/MakeSEQ /wrkdirs/science/dlpoly-classic/dl_class_1.8/source /usr/bin/sed -i.bak 's|gfortran|gfortran5|g' /wrkdirs/science/dlpoly-classic/dl_class_1.8/source/MakeSEQ /usr/bin/sed -i.bak 's|DLPOLY\.X|dlpoly-classic|g' /wrkdirs/science/dlpoly-classic/dl_class_1.8/source/MakeSEQ /usr/bin/sed -i.bak 's|mpif90|/usr/local/mpi/openmpi/bin/mpif90|g' /wrkdirs/science/dlpoly-classic/dl_class_1.8/source/MakePAR /usr/bin/sed -i.bak 's|DLPOLY\.X|dlpoly-classic-mpi|g' /wrkdirs/science/dlpoly-classic/dl_class_1.8/source/MakePAR =========================================================================== =================================================== ===> dlpolyclassic-1.8_10 depends on file: /usr/local/mpi/openmpi/bin/mpif90 - not found ===> Installing existing package /packages/All/openmpi-1.10.4.txz Installing openmpi-1.10.4... `-- Installing libltdl-2.4.6... `-- Extracting libltdl-2.4.6: .......... done `-- Installing hwloc-1.11.1... | `-- Installing libxml2-2.9.4... | `-- Extracting libxml2-2.9.4: .......... done | `-- Installing libpciaccess-0.13.4... | | `-- Installing pciids-20160621... | | `-- Extracting pciids-20160621: ..... done | `-- Extracting libpciaccess-0.13.4: ...... done `-- Extracting hwloc-1.11.1: .......... done `-- Installing gcc5-5.4.0... | `-- Installing indexinfo-0.2.5... | `-- Extracting indexinfo-0.2.5: .... done | `-- Installing mpc-1.0.3... | | `-- Installing gmp-5.1.3_3... | | `-- Extracting gmp-5.1.3_3: .......... done | | `-- Installing mpfr-3.1.5... | | `-- Extracting mpfr-3.1.5: .......... done | `-- Extracting mpc-1.0.3: ...... done | `-- Installing binutils-2.27_4,1... | | `-- Installing gettext-runtime-0.19.8.1... | | `-- Extracting gettext-runtime-0.19.8.1: .......... done | `-- Extracting binutils-2.27_4,1: .......... done `-- Extracting gcc5-5.4.0: .......... done Extracting openmpi-1.10.4: .......... done Message from gcc5-5.4.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> dlpolyclassic-1.8_10 depends on file: /usr/local/mpi/openmpi/bin/mpif90 - found ===> Returning to build of dlpolyclassic-1.8_10 ===> dlpolyclassic-1.8_10 depends on file: /usr/local/openjdk8/bin/java - not found ===> Installing existing package /packages/All/openjdk8-8.102.14_1.txz Installing openjdk8-8.102.14_1... `-- Installing giflib-5.1.3... `-- Extracting giflib-5.1.3: .......... done `-- Installing libXt-1.1.5,1... | `-- Installing xproto-7.0.28... | `-- Extracting xproto-7.0.28: .......... done | `-- Installing libSM-1.2.2_3,1... | | `-- Installing libICE-1.0.9_1,1... | | `-- Extracting libICE-1.0.9_1,1: .......... done | `-- Extracting libSM-1.2.2_3,1: .......... done | `-- Installing libX11-1.6.3,1... | | `-- Installing kbproto-1.0.7... | | `-- Extracting kbproto-1.0.7: .......... done | | `-- Installing libXdmcp-1.1.2... | | `-- Extracting libXdmcp-1.1.2: ......... done | | `-- Installing libxcb-1.11.1... | | `-- Installing libpthread-stubs-0.3_6... | | `-- Extracting libpthread-stubs-0.3_6: ..... done | | `-- Installing libXau-1.0.8_3... | | `-- Extracting libXau-1.0.8_3: .......... done | | `-- Extracting libxcb-1.11.1: .......... done | `-- Extracting libX11-1.6.3,1: .......... done `-- Extracting libXt-1.1.5,1: .......... done `-- Installing libXtst-1.2.2_3... | `-- Installing libXext-1.3.3_1,1... | | `-- Installing xextproto-7.3.0... | | `-- Extracting xextproto-7.3.0: .......... done | `-- Extracting libXext-1.3.3_1,1: .......... done | `-- Installing inputproto-2.3.1... | `-- Extracting inputproto-2.3.1: ..... done | `-- Installing libXi-1.7.6,1... | | `-- Installing libXfixes-5.0.1_3... | | `-- Installing fixesproto-5.0... | | `-- Extracting fixesproto-5.0: .... done | | `-- Extracting libXfixes-5.0.1_3: .......... done | `-- Extracting libXi-1.7.6,1: .......... done | `-- Installing recordproto-1.14.2... | `-- Extracting recordproto-1.14.2: .... done `-- Extracting libXtst-1.2.2_3: .......... done `-- Installing java-zoneinfo-2016.f... `-- Extracting java-zoneinfo-2016.f: .......... done `-- Installing gcc-4.8.5_2... `-- Extracting gcc-4.8.5_2: .......... done `-- Installing libXrender-0.9.9... | `-- Installing renderproto-0.11.1... | `-- Extracting renderproto-0.11.1: .... done `-- Extracting libXrender-0.9.9: .......... done `-- Installing freetype2-2.6.3... `-- Extracting freetype2-2.6.3: .......... done `-- Installing alsa-lib-1.1.2... `-- Extracting alsa-lib-1.1.2: .......... done `-- Installing fontconfig-2.12.1,1... | `-- Installing expat-2.2.0... | `-- Extracting expat-2.2.0: .......... done `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded `-- Installing dejavu-2.35... | `-- Installing mkfontdir-1.0.7... | | `-- Installing mkfontscale-1.1.2... | | `-- Installing libfontenc-1.1.3... | | `-- Extracting libfontenc-1.1.3: ...... done | | `-- Extracting mkfontscale-1.1.2: .. done | `-- Extracting mkfontdir-1.0.7: .. done `-- Extracting dejavu-2.35: .......... done `-- Installing javavmwrapper-2.5_2... `-- Extracting javavmwrapper-2.5_2: .......... done Extracting openjdk8-8.102.14_1: .......... done Message from gcc-4.8.5_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc48 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from dejavu-2.35: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from openjdk8-8.102.14_1: ====================================================================== This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ====================================================================== ===> dlpolyclassic-1.8_10 depends on file: /usr/local/openjdk8/bin/java - found ===> Returning to build of dlpolyclassic-1.8_10 ===> dlpolyclassic-1.8_10 depends on executable: gfortran5 - found ===> dlpolyclassic-1.8_10 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz Installing gmake-4.2.1_1... Extracting gmake-4.2.1_1: .......... done ===> dlpolyclassic-1.8_10 depends on executable: gmake - found ===> Returning to build of dlpolyclassic-1.8_10 ===> dlpolyclassic-1.8_10 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for dlpolyclassic-1.8_10 =========================================================================== =================================================== ===> Building for dlpolyclassic-1.8_10 (cd /wrkdirs/science/dlpoly-classic/dl_class_1.8/source && /bin/cp -f MakeSEQ Makefile && make gfortran5) make LD="gfortran5 -o" LDFLAGS="" FC=gfortran5 FFLAGS="-c -O2 -ffast-math" EX=dlpoly-classic BINROOT=../execute seq gfortran5 -c -O2 -ffast-math parse_module.f gfortran5 -c -O2 -ffast-math setup_module.f gfortran5 -c -O2 -ffast-math error_module.f gfortran5 -c -O2 -ffast-math site_module.f gfortran5 -c -O2 -ffast-math config_module.f gfortran5 -c -O2 -ffast-math pair_module.f gfortran5 -c -O2 -ffast-math utility_module.f gfortran5 -c -O2 -ffast-math metafreeze_module.f gfortran5 -c -O2 -ffast-math solvation_module.f gfortran5 -c -O2 -ffast-math tether_module.f gfortran5 -c -O2 -ffast-math vdw_module.f gfortran5 -c -O2 -ffast-math property_module.f gfortran5 -c -O2 -ffast-math rigid_body_module.f gfortran5 -c -O2 -ffast-math angles_module.f gfortran5 -c -O2 -ffast-math bonds_module.f gfortran5 -c -O2 -ffast-math shake_module.f gfortran5 -c -O2 -ffast-math inversion_module.f gfortran5 -c -O2 -ffast-math dihedral_module.f gfortran5 -c -O2 -ffast-math core_shell_module.f gfortran5 -c -O2 -ffast-math exclude_module.f gfortran5 -c -O2 -ffast-math ewald_module.f gfortran5 -c -O2 -ffast-math coulomb_module.f gfortran5 -c -O2 -ffast-math external_field_module.f gfortran5 -c -O2 -ffast-math four_body_module.f gfortran5 -c -O2 -ffast-math hkewald_module.f gfortran5 -c -O2 -ffast-math metal_module.f gfortran5 -c -O2 -ffast-math ensemble_tools_module.f gfortran5 -c -O2 -ffast-math temp_scalers_module.f gfortran5 -c -O2 -ffast-math three_body_module.f gfortran5 -c -O2 -ffast-math spme_module.f gfortran5 -c -O2 -ffast-math tersoff_module.f gfortran5 -c -O2 -ffast-math neu_coul_module.f gfortran5 -c -O2 -ffast-math nlist_builders_module.f gfortran5 -c -O2 -ffast-math forces_module.f gfortran5 -c -O2 -ffast-math lf_motion_module.f gfortran5 -c -O2 -ffast-math lf_rotation1_module.f gfortran5 -c -O2 -ffast-math lf_rotation2_module.f gfortran5 -c -O2 -ffast-math vv_motion_module.f gfortran5 -c -O2 -ffast-math vv_rotation1_module.f gfortran5 -c -O2 -ffast-math vv_rotation2_module.f gfortran5 -c -O2 -ffast-math pmf_module.f gfortran5 -c -O2 -ffast-math integrator_module.f gfortran5 -c -O2 -ffast-math optimiser_module.f gfortran5 -c -O2 -ffast-math hyper_dynamics_module.f gfortran5 -c -O2 -ffast-math driver_module.f gfortran5 -c -O2 -ffast-math define_system_module.f gfortran5 -c -O2 -ffast-math serial.f gfortran5 -c -O2 -ffast-math dlpoly.f gfortran5 -o dlpoly-classic parse_module.o setup_module.o error_module.o site_module.o config_module.o pair_module.o utility_module.o metafreeze_module.o solvation_module.o tether_module.o vdw_module.o property_module.o rigid_body_module.o angles_module.o bonds_module.o shake_module.o inversion_module.o dihedral_module.o core_shell_module.o exclude_module.o ewald_module.o coulomb_module.o external_field_module.o four_body_module.o hkewald_module.o metal_module.o ensemble_tools_module.o temp_scalers_module.o three_body_module.o spme_module.o tersoff_module.o neu_coul_module.o nlist_builders_module.o forces_module.o lf_motion_module.o lf_rotation1_module.o lf_rotation2_module.o vv_motion_module.o vv_rotation1_module.o vv_rotation2_module.o pmf_module.o integrator_module.o optimiser_module.o hyper_dynamics_module.o driver_module.o define_system_module.o serial.o dlpoly.o mv dlpoly-classic ../execute/dlpoly-classic (cd /wrkdirs/science/dlpoly-classic/dl_class_1.8/source && make clean && /bin/cp -f MakePAR Makefile && make gfortran) rm -f parse_module.o setup_module.o error_module.o site_module.o config_module.o pair_module.o utility_module.o metafreeze_module.o solvation_module.o tether_module.o vdw_module.o property_module.o rigid_body_module.o angles_module.o bonds_module.o shake_module.o inversion_module.o dihedral_module.o core_shell_module.o exclude_module.o ewald_module.o coulomb_module.o external_field_module.o four_body_module.o hkewald_module.o metal_module.o ensemble_tools_module.o temp_scalers_module.o three_body_module.o spme_module.o tersoff_module.o neu_coul_module.o nlist_builders_module.o forces_module.o lf_motion_module.o lf_rotation1_module.o lf_rotation2_module.o vv_motion_module.o vv_rotation1_module.o vv_rotation2_module.o pmf_module.o integrator_module.o optimiser_module.o hyper_dynamics_module.o driver_module.o define_system_module.o serial.o dlpoly.o *.mod make FC="/usr/local/mpi/openmpi/bin/mpif90" LD="/usr/local/mpi/openmpi/bin/mpif90 -o" LDFLAGS="-O2 -ffast-math" FFLAGS="-c -O2 -ffast-math" EX=dlpoly-classic-mpi BINROOT=../execute par /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math parse_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math setup_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math error_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math site_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math config_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math pair_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math utility_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math metafreeze_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math solvation_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math tether_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math vdw_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math property_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math rigid_body_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math angles_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math bonds_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math shake_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math inversion_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math dihedral_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math core_shell_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math exclude_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math ewald_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math coulomb_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math external_field_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math four_body_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math hkewald_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math metal_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math ensemble_tools_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math temp_scalers_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math three_body_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math spme_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math tersoff_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math neu_coul_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math nlist_builders_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math forces_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math lf_motion_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math lf_rotation1_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math lf_rotation2_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math vv_motion_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math vv_rotation1_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math vv_rotation2_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math pmf_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math integrator_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math optimiser_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math hyper_dynamics_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math driver_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math define_system_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math basic_comms.f basic_comms.f:318:17: call gisum(i,1,idum) 1 Warning: Rank mismatch in argument 'aaa' at (1) (rank-1 and scalar) /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math merge_tools.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math pass_tools.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math dlpoly.f /usr/local/mpi/openmpi/bin/mpif90 -o dlpoly-classic-mpi -O2 -ffast-math parse_module.o setup_module.o error_module.o site_module.o config_module.o pair_module.o utility_module.o metafreeze_module.o solvation_module.o tether_module.o vdw_module.o property_module.o rigid_body_module.o angles_module.o bonds_module.o shake_module.o inversion_module.o dihedral_module.o core_shell_module.o exclude_module.o ewald_module.o coulomb_module.o external_field_module.o four_body_module.o hkewald_module.o metal_module.o ensemble_tools_module.o temp_scalers_module.o three_body_module.o spme_module.o tersoff_module.o neu_coul_module.o nlist_builders_module.o forces_module.o lf_motion_module.o lf_rotation1_module.o lf_rotation2_module.o vv_motion_module.o vv_rotation1_module.o vv_rotation2_module.o pmf_module.o integrator_module.o optimiser_module.o hyper_dynamics_module.o driver_module.o define_system_module.o basic_comms.o merge_tools.o pass_tools.o dlpoly.o mv dlpoly-classic-mpi ../execute/dlpoly-classic-mpi =========================================================================== =================================================== ===> dlpolyclassic-1.8_10 depends on file: /usr/local/mpi/openmpi/bin/mpirun - found ===> dlpolyclassic-1.8_10 depends on file: /usr/local/openjdk8/bin/java - found ===> dlpolyclassic-1.8_10 depends on executable: gfortran5 - found =========================================================================== =================================================== ===> Staging for dlpolyclassic-1.8_10 ===> Generating temporary packing list install -s -m 555 /wrkdirs/science/dlpoly-classic/dl_class_1.8/execute/dlpoly-classic /wrkdirs/science/dlpoly-classic/stage/usr/local/bin install -s -m 555 /wrkdirs/science/dlpoly-classic/dl_class_1.8/execute/dlpoly-classic-mpi /wrkdirs/science/dlpoly-classic/stage/usr/local/bin install -m 0644 /wrkdirs/science/dlpoly-classic/dl_class_1.8/manual/* /wrkdirs/science/dlpoly-classic/stage/usr/local/share/doc/dlpoly /bin/cp -R /wrkdirs/science/dlpoly-classic/dl_class_1.8/execute /wrkdirs/science/dlpoly-classic/stage/usr/local/share/examples/dlpoly /bin/rm -f /wrkdirs/science/dlpoly-classic/stage/usr/local/share/examples/dlpoly/execute/dlpoly* install -m 0644 /wrkdirs/science/dlpoly-classic/dl_class_1.8/java/GUI.jar /wrkdirs/science/dlpoly-classic/stage/usr/local/share/dlpoly install -m 555 /wrkdirs/science/dlpoly-classic/dlpoly-gui /wrkdirs/science/dlpoly-classic/stage/usr/local/bin ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for dlpolyclassic-1.8_10 file sizes/checksums [13]: . done packing files [13]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for dlpolyclassic-1.8_10 build of science/dlpoly-classic ended at Wed Oct 5 17:08:37 PDT 2016 build time: 00:06:55