=> Building biology/blat build started at Wed Oct 5 13:34:48 PDT 2016 port directory: /usr/ports/biology/blat building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: ports@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/bleeding-edge-default/ref/../05//usr/ports/biology/blat/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400702 !!! Jail is newer than host. (Jail: 400702, Host: 400700) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/bleeding-edge-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=blat-36 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/bleeding-edge-default/ref/.p/pool MASTERNAME=bleeding-edge-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for blat-36: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/biology/blat XDG_CONFIG_HOME=/wrkdirs/biology/blat HOME=/wrkdirs/biology/blat TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- MACHTYPE="x86_64" STRIP="true" OPENSSLBASE=/usr/local OPENSSLDIR=/usr/local/openssl OPENSSLINC=/usr/local/include OPENSSLLIB=/usr/local/lib OPENSSLRPATH=/usr/local/lib XDG_DATA_HOME=/wrkdirs/biology/blat XDG_CONFIG_HOME=/wrkdirs/biology/blat HOME=/wrkdirs/biology/blat TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -I/usr/local/include -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include $(libpng-config --cflags)" LDFLAGS=" -L/usr/local/lib $(libpng-config --ldflags) -L/usr/local/lib/mysql -Wl,-rpath,/usr/local/lib" LIBS="" CXX="c++" CXXFLAGS=" -pipe -I/usr/local/include -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/blat" EXAMPLESDIR="share/examples/blat" DATADIR="share/blat" WWWDIR="www/blat" ETCDIR="etc/blat" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/blat DOCSDIR=/usr/local/share/doc/blat EXAMPLESDIR=/usr/local/share/examples/blat WWWDIR=/usr/local/www/blat ETCDIR=/usr/local/etc/blat --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> NOTICE: The blat port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port =========================================================================== =================================================== ===> blat-36 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> blat-36 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of blat-36 =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The blat port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by blat-36 for building =========================================================================== =================================================== ===> NOTICE: The blat port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by blat-36 for building => SHA256 Checksum OK for blatSrc36.zip. =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The blat port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by blat-36 for building ===> Extracting for blat-36 => SHA256 Checksum OK for blatSrc36.zip. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for blat-36 ===> Applying DragonFly patches for blat-36 =========================================================================== =================================================== ===> blat-36 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz Installing gmake-4.2.1_1... `-- Installing indexinfo-0.2.5... `-- Extracting indexinfo-0.2.5: .... done `-- Installing gettext-runtime-0.19.8.1... `-- Extracting gettext-runtime-0.19.8.1: .......... done Extracting gmake-4.2.1_1: .......... done ===> blat-36 depends on executable: gmake - found ===> Returning to build of blat-36 ===> blat-36 depends on file: /usr/local/lib/libcrypto.so.38 - not found ===> Installing existing package /packages/All/libressl-2.4.3.txz Installing libressl-2.4.3... Extracting libressl-2.4.3: .......... done ===> blat-36 depends on file: /usr/local/lib/libcrypto.so.38 - found ===> Returning to build of blat-36 =========================================================================== =================================================== ===> blat-36 depends on shared library: libpng.so - not found ===> Installing existing package /packages/All/png-1.6.23.txz Installing png-1.6.23... Extracting png-1.6.23: .......... done ===> blat-36 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> Returning to build of blat-36 ===> blat-36 depends on shared library: libmysqlclient.so.18 - not found ===> Installing existing package /packages/All/mysql56-client-5.6.33.txz Installing mysql56-client-5.6.33... `-- Installing libedit-3.1.20150325_2,1... | `-- Installing ncurses-6.0_5... | `-- Extracting ncurses-6.0_5: .......... done `-- Extracting libedit-3.1.20150325_2,1: .......... done Extracting mysql56-client-5.6.33: .......... done Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from mysql56-client-5.6.33: * * * * * * * * * * * * * * * * * * * * * * * * Please be aware the database client is vulnerable to CVE-2015-3152 - SSL Downgrade aka "BACKRONYM". You may find more information at the following URL: http://www.vuxml.org/freebsd/36bd352d-299b-11e5-86ff-14dae9d210b8.html Although this database client is not listed as "affected", it is vulnerable and will not be receiving a patch. Please take note of this when deploying this software. * * * * * * * * * * * * * * * * * * * * * * * * ===> blat-36 depends on shared library: libmysqlclient.so.18 - found (/usr/local/lib/mysql/libmysqlclient.so.18) ===> Returning to build of blat-36 =========================================================================== =================================================== ===> Configuring for blat-36 =========================================================================== =================================================== ===> Building for blat-36 gmake[1]: Entering directory '/wrkdirs/biology/blat/blatSrc' gmake -C lib gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/lib' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o aliType.o -c aliType.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoAssembly.o -c annoAssembly.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoFilter.o -c annoFilter.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoFormatter.o -c annoFormatter.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoFormatTab.o -c annoFormatTab.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoGrator.o -c annoGrator.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoGrateWig.o -c annoGrateWig.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoGratorQuery.o -c annoGratorQuery.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoOption.o -c annoOption.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoRow.o -c annoRow.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoStreamer.o -c annoStreamer.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoStreamBigBed.o -c annoStreamBigBed.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoStreamBigWig.o -c annoStreamBigWig.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoStreamTab.o -c annoStreamTab.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o annoStreamVcf.o -c annoStreamVcf.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o apacheLog.o -c apacheLog.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o asParse.o -c asParse.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o axt.o -c axt.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o axtAffine.o -c axtAffine.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o bamFile.o -c bamFile.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o base64.o -c base64.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o basicBed.o -c basicBed.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o bbiRead.o -c bbiRead.c bbiRead.c: In function 'bbiTotalSummary': bbiRead.c:748:34: warning: variable 'chromEnd' set but not used [-Wunused-but-set-variable] bits32 chromId, chromStart, chromEnd; ^ bbiRead.c:748:22: warning: variable 'chromStart' set but not used [-Wunused-but-set-variable] bits32 chromId, chromStart, chromEnd; ^ bbiRead.c:748:13: warning: variable 'chromId' set but not used [-Wunused-but-set-variable] bits32 chromId, chromStart, chromEnd; ^ basicBed.c: In function 'loadAndValidateBed': basicBed.c:1371:8: warning: variable 'expScores' set but not used [-Wunused-but-set-variable] float *expScores; ^ basicBed.c:1370:6: warning: variable 'expIds' set but not used [-Wunused-but-set-variable] int *expIds; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o bbiWrite.o -c bbiWrite.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o bigBed.o -c bigBed.c bigBed.c: In function 'bigBedListExtraIndexes': bigBed.c:554:12: warning: variable 'type' set but not used [-Wunused-but-set-variable] bits16 type,fieldCount; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o binRange.o -c binRange.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o bits.o -c bits.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o blastOut.o -c blastOut.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o blastParse.o -c blastParse.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o boxClump.o -c boxClump.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o boxLump.o -c boxLump.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o bPlusTree.o -c bPlusTree.c bPlusTree.c: In function 'bptDataStart': bPlusTree.c:286:12: warning: variable 'childCount' set but not used [-Wunused-but-set-variable] bits16 childCount; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o bwgCreate.o -c bwgCreate.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o bwgQuery.o -c bwgQuery.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o bwgValsOnChrom.o -c bwgValsOnChrom.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o cda.o -c cda.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o chain.o -c chain.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o chainBlock.o -c chainBlock.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o chainConnect.o -c chainConnect.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o chainToAxt.o -c chainToAxt.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o chainToPsl.o -c chainToPsl.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o cheapcgi.o -c cheapcgi.c cheapcgi.c: In function 'cgiParseMultipart': cheapcgi.c:385:75: warning: variable 'ct' set but not used [-Wunused-but-set-variable] char *cd = NULL, *cdMain = NULL, *cdName = NULL, *cdFileName = NULL, *ct = NULL; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o cirTree.o -c cirTree.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o codebias.o -c codebias.c codebias.c: In function 'codonFindFrame': codebias.c:104:8: warning: variable 'logProbs' set but not used [-Wunused-but-set-variable] double logProbs[3]; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o colHash.o -c colHash.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o common.o -c common.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o correlate.o -c correlate.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o crTree.o -c crTree.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o dgRange.o -c dgRange.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o diGraph.o -c diGraph.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o dlist.o -c dlist.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o dnaLoad.o -c dnaLoad.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o dnaMarkov.o -c dnaMarkov.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o dnaMotif.o -c dnaMotif.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o dnaseq.o -c dnaseq.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o dnautil.o -c dnautil.c dnautil.c: In function 'findHeadPolyTMaybeMask': dnautil.c:999:5: warning: variable 'pastPoly' set but not used [-Wunused-but-set-variable] int pastPoly = 0; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o dtdParse.o -c dtdParse.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o dyOut.o -c dyOut.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o dystring.o -c dystring.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o elmTree.o -c elmTree.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o emblParse.o -c emblParse.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o errCatch.o -c errCatch.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o errAbort.o -c errAbort.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o fa.o -c fa.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o ffAli.o -c ffAli.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o ffScore.o -c ffScore.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o fieldedTable.o -c fieldedTable.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o filePath.o -c filePath.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o fixColor.o -c fixColor.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o flydna.o -c flydna.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o fof.o -c fof.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgCourier10.o -c font/mgCourier10.c fof.c: In function 'fofMake': fof.c:485:16: warning: variable 'itemSize' set but not used [-Wunused-but-set-variable] int i, fileIx, itemSize; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgCourier12.o -c font/mgCourier12.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgCourier14.o -c font/mgCourier14.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgCourier18.o -c font/mgCourier18.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgCourier24.o -c font/mgCourier24.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgCourier34.o -c font/mgCourier34.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgCourier8.o -c font/mgCourier8.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelvetica10.o -c font/mgHelvetica10.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelvetica12.o -c font/mgHelvetica12.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelvetica14.o -c font/mgHelvetica14.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelvetica18.o -c font/mgHelvetica18.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelvetica24.o -c font/mgHelvetica24.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelvetica34.o -c font/mgHelvetica34.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelvetica8.o -c font/mgHelvetica8.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelveticaBold10.o -c font/mgHelveticaBold10.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelveticaBold12.o -c font/mgHelveticaBold12.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelveticaBold14.o -c font/mgHelveticaBold14.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelveticaBold18.o -c font/mgHelveticaBold18.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelveticaBold24.o -c font/mgHelveticaBold24.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelveticaBold34.o -c font/mgHelveticaBold34.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgHelveticaBold8.o -c font/mgHelveticaBold8.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgSixhi6.o -c font/mgSixhi6.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgSail8.o -c font/mgSail8.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgTimes10.o -c font/mgTimes10.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgTimes12.o -c font/mgTimes12.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgTimes14.o -c font/mgTimes14.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgTimes18.o -c font/mgTimes18.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgTimes24.o -c font/mgTimes24.c cc -O -g -pipe 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-Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o font/mgMenlo12.o -c font/mgMenlo12.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o fq.o -c fq.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o fuzzyShow.o -c fuzzyShow.c cc -O -g -pipe 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-D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o htmlPage.o -c htmlPage.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o htmshell.o -c htmshell.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o hmac.o -c hmac.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o https.o -c https.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o intExp.o -c intExp.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o intValTree.o -c intValTree.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o internet.o -c internet.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o itsa.o -c itsa.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o iupac.o -c iupac.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o jointalign.o -c jointalign.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o jpegSize.o -c jpegSize.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o jsonParse.o -c jsonParse.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o jsonWrite.o -c jsonWrite.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o keys.o -c keys.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o knetUdc.o -c knetUdc.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o kxTok.o -c kxTok.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o linefile.o -c linefile.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o lineFileOnBigBed.o -c lineFileOnBigBed.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o localmem.o -c localmem.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o log.o -c log.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o longToList.o -c longToList.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o maf.o -c maf.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o mafFromAxt.o -c mafFromAxt.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o mafScore.o -c mafScore.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o mailViaPipe.o -c mailViaPipe.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o md5.o -c md5.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o memalloc.o -c memalloc.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o memgfx.o -c memgfx.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o meta.o -c meta.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o metaWig.o -c metaWig.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o mgCircle.o -c mgCircle.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o mgPolygon.o -c mgPolygon.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o mime.o -c mime.c mime.c: In function 'parseMultiParts': mime.c:600:13: warning: variable 'toobig' set but not used [-Wunused-but-set-variable] boolean toobig=FALSE; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o net.o -c net.c net.c: In function 'netSkipHttpHeaderLinesWithRedirect': net.c:1419:8: warning: variable 'version' set but not used [-Wunused-but-set-variable] char *version, *code; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o nib.o -c nib.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o nibTwo.o -c nibTwo.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o nt4.o -c nt4.c nt4.c: In function 'newNt4': nt4.c:35:6: warning: variable 'unpacked' set but not used [-Wunused-but-set-variable] DNA *unpacked; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o numObscure.o -c numObscure.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o obscure.o -c obscure.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o oldGff.o -c oldGff.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o oligoTm.o -c oligoTm.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o options.o -c options.c options.c: In function 'validateOption': options.c:49:11: warning: variable 'discardMe' set but not used [-Wunused-but-set-variable] long long discardMe = 0; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o osunix.o -c osunix.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pairHmm.o -c pairHmm.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pairDistance.o -c pairDistance.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o paraFetch.o -c paraFetch.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o peakCluster.o -c peakCluster.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o phyloTree.o -c phyloTree.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pipeline.o -c pipeline.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o portimpl.o -c portimpl.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pngwrite.o -c pngwrite.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o psGfx.o -c psGfx.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o psPoly.o -c psPoly.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pscmGfx.o -c pscmGfx.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o psl.o -c psl.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pslGenoShow.o -c pslGenoShow.c pslGenoShow.c: In function 'pslShowAlignmentStranded2': pslGenoShow.c:34:36: warning: variable 'tcfmEnd' set but not used [-Wunused-but-set-variable] int qcfmStart, qcfmEnd, tcfmStart, tcfmEnd; ^ pslGenoShow.c:34:16: warning: variable 'qcfmEnd' set but not used [-Wunused-but-set-variable] int qcfmStart, qcfmEnd, tcfmStart, tcfmEnd; ^ pslGenoShow.c:33:36: warning: variable 'tbafEnd' set but not used [-Wunused-but-set-variable] int qbafStart, qbafEnd, tbafStart, tbafEnd; ^ pslGenoShow.c:33:16: warning: variable 'qbafEnd' set but not used [-Wunused-but-set-variable] int qbafStart, qbafEnd, tbafStart, tbafEnd; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pslShow.o -c pslShow.c pslShow.c: In function 'pslShowAlignmentStranded': pslShow.c:25:36: warning: variable 'tcfmEnd' set but not used [-Wunused-but-set-variable] int qcfmStart, qcfmEnd, tcfmStart, tcfmEnd; ^ pslShow.c:25:16: warning: variable 'qcfmEnd' set but not used [-Wunused-but-set-variable] int qcfmStart, qcfmEnd, tcfmStart, tcfmEnd; ^ pslShow.c:24:36: warning: variable 'tbafEnd' set but not used [-Wunused-but-set-variable] int qbafStart, qbafEnd, tbafStart, tbafEnd; ^ pslShow.c:24:16: warning: variable 'qbafEnd' set but not used [-Wunused-but-set-variable] int qbafStart, qbafEnd, tbafStart, tbafEnd; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pslTbl.o -c pslTbl.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pslTransMap.o -c pslTransMap.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pthreadDoList.o -c pthreadDoList.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pthreadWrap.o -c pthreadWrap.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o qa.o -c qa.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o quickHeap.o -c quickHeap.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o quotedP.o -c quotedP.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o ra.o -c ra.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o rainbow.o -c rainbow.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o raToStruct.o -c raToStruct.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o rbTree.o -c rbTree.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o rangeTree.o -c rangeTree.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o regexHelper.o -c regexHelper.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o repMask.o -c repMask.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o rle.o -c rle.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o rnautil.o -c rnautil.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o rqlEval.o -c rqlEval.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o rqlParse.o -c rqlParse.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o rudp.o -c rudp.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o scoreWindow.o -c scoreWindow.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o seg.o -c seg.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o seqOut.o -c seqOut.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o seqStats.o -c seqStats.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o servBrcMcw.o -c servBrcMcw.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o servCrunx.o -c servCrunx.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o servcis.o -c servcis.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o servcl.o -c servcl.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o servmsII.o -c servmsII.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o servpws.o -c servpws.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o shaRes.o -c shaRes.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o slog.o -c slog.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o snof.o -c snof.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o snofmake.o -c snofmake.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o snofsig.o -c snofsig.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o spaceSaver.o -c spaceSaver.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o spacedColumn.o -c spacedColumn.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o spacedSeed.o -c spacedSeed.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o splatAli.o -c splatAli.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o sqlList.o -c sqlList.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o sqlNum.o -c sqlNum.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o subText.o -c subText.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o sufa.o -c sufa.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o sufx.o -c sufx.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o synQueue.o -c synQueue.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o tabRow.o -c tabRow.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o textOut.o -c textOut.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o tokenizer.o -c tokenizer.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o trix.o -c trix.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o twoBit.o -c twoBit.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o udc.o -c udc.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o vcf.o -c vcf.c udc.c: In function 'udcBitmapOpen': udc.c:557:8: warning: variable 'reserved64' set but not used [-Wunused-but-set-variable] bits64 reserved64; ^ udc.c:556:8: warning: variable 'reserved32' set but not used [-Wunused-but-set-variable] bits32 reserved32; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o vcfBits.o -c vcfBits.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o vGfx.o -c vGfx.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o vPng.o -c vPng.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o verbose.o -c verbose.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o wildcmp.o -c wildcmp.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o wormdna.o -c wormdna.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o xAli.o -c xAli.c wormdna.c: In function 'wormGeneForOrf': wormdna.c:605:13: warning: variable 'wordCount' set but not used [-Wunused-but-set-variable] int wordCount; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o xa.o -c xa.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o xap.o -c xap.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o xenshow.o -c xenshow.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o xmlEscape.o -c xmlEscape.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o xp.o -c xp.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o zlibFace.o -c zlibFace.c ar rcus x86_64/jkweb.a aliType.o annoAssembly.o annoFilter.o annoFormatter.o annoFormatTab.o annoGrator.o annoGrateWig.o annoGratorQuery.o annoOption.o annoRow.o annoStreamer.o annoStreamBigBed.o annoStreamBigWig.o annoStreamTab.o annoStreamVcf.o apacheLog.o asParse.o axt.o axtAffine.o bamFile.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o bwgValsOnChrom.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dyOut.o dystring.o elmTree.o emblParse.o errCatch.o errAbort.o fa.o ffAli.o ffScore.o fieldedTable.o filePath.o fixColor.o flydna.o fof.o font/mgCourier10.o font/mgCourier12.o font/mgCourier14.o font/mgCourier18.o font/mgCourier24.o font/mgCourier34.o font/mgCourier8.o font/mgHelvetica10.o font/mgHelvetica12.o font/mgHelvetica14.o font/mgHelvetica18.o font/mgHelvetica24.o font/mgHelvetica34.o font/mgHelvetica8.o font/mgHelveticaBold10.o font/mgHelveticaBold12.o font/mgHelveticaBold14.o font/mgHelveticaBold18.o font/mgHelveticaBold24.o font/mgHelveticaBold34.o font/mgHelveticaBold8.o font/mgSixhi6.o font/mgSail8.o font/mgTimes10.o font/mgTimes12.o font/mgTimes14.o font/mgTimes18.o font/mgTimes24.o font/mgTimes34.o font/mgTimes8.o font/mgMenlo12.o fq.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o hacTree.o hash.o hex.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o hmac.o https.o intExp.o intValTree.o internet.o itsa.o iupac.o jointalign.o jpegSize.o jsonParse.o jsonWrite.o keys.o knetUdc.o kxTok.o linefile.o lineFileOnBigBed.o localmem.o log.o longToList.o maf.o mafFromAxt.o mafScore.o mailViaPipe.o md5.o memalloc.o memgfx.o meta.o metaWig.o mgCircle.o mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o pairDistance.o paraFetch.o peakCluster.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadDoList.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rainbow.o raToStruct.o rbTree.o rangeTree.o regexHelper.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vcf.o vcfBits.o vGfx.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/lib' gmake -C jkOwnLib gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/jkOwnLib' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o bandExt.o -c bandExt.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o crudeali.o -c crudeali.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o ffAliHelp.o -c ffAliHelp.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o ffSeedExtend.o -c ffSeedExtend.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o fuzzyFind.o -c fuzzyFind.c fuzzyFind.c: In function 'rwFindTilesBetween': fuzzyFind.c:1170:5: warning: variable 'tileIx' set but not used [-Wunused-but-set-variable] int tileIx; ^ ffSeedExtend.c: In function 'clumpToExactRange': ffSeedExtend.c:217:57: warning: variable 'lastTe' set but not used [-Wunused-but-set-variable] BIOPOL *lastQs = NULL, *lastQe = NULL, *lastTs = NULL, *lastTe = NULL; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o genoFind.o -c genoFind.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o gfBlatLib.o -c gfBlatLib.c gfBlatLib.c: In function 'clumpToHspRange': gfBlatLib.c:728:57: warning: variable 'lastTe' set but not used [-Wunused-but-set-variable] BIOPOL *lastQs = NULL, *lastQe = NULL, *lastTs = NULL, *lastTe = NULL; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o gfClientLib.o -c gfClientLib.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o gfInternal.o -c gfInternal.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o gfOut.o -c gfOut.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o gfPcrLib.o -c gfPcrLib.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o gfWebLib.o -c gfWebLib.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o ooc.o -c ooc.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o patSpace.o -c patSpace.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o splix.o -c splix.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o supStitch.o -c supStitch.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o trans3.o -c trans3.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o xenbig.o -c xenbig.c xenbig.c: In function 'xStitch': xenbig.c:885:13: warning: variable 'partCount' set but not used [-Wunused-but-set-variable] int partCount; ^ cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o xensmall.o -c xensmall.c xensmall.c: In function 'xenAlignSmall': xensmall.c:223:5: warning: variable 'matchOff' set but not used [-Wunused-but-set-variable] int matchOff, qSlipOff, tSlipOff; ^ ar rcus ../lib/x86_64/jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/jkOwnLib' gmake -C blat gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/blat' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o blat.o -c blat.c cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /wrkdirs/biology/blat/blatSrc//bin/x86_64/blat blat.o ../lib/x86_64/jkOwnLib.a ../lib/x86_64/jkweb.a -L/usr/local/lib -L/usr/local/lib -lpng16 -L/usr/local/lib/mysql -Wl,-rpath,/usr/local/lib -pthread /usr/local/lib/libpng.a -lm true /wrkdirs/biology/blat/blatSrc//bin/x86_64/blat gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/blat' gmake -C gfClient gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/gfClient' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o gfClient.o -c gfClient.c cc -O -g -o /wrkdirs/biology/blat/blatSrc//bin/x86_64/gfClient gfClient.o ../lib/x86_64/jkOwnLib.a ../lib/x86_64/jkweb.a -L/usr/local/lib/mysql -lmysqlclient -pthread -lm -lstdc++ -lrt -lm -L/usr/local/lib -L/usr/local/lib -lpng16 -L/usr/local/lib/mysql -Wl,-rpath,/usr/local/lib -pthread /usr/local/lib/libpng.a -lm -lm true /wrkdirs/biology/blat/blatSrc//bin/x86_64/gfClient gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/gfClient' gmake -C gfServer gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/gfServer' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o gfServer.o -c gfServer.c cc -O -g -o /wrkdirs/biology/blat/blatSrc//bin/x86_64/gfServer gfServer.o ../lib/x86_64/jkOwnLib.a ../lib/x86_64/jkweb.a -L/usr/local/lib/mysql -lmysqlclient -pthread -lm -lstdc++ -lrt -lm -L/usr/local/lib -L/usr/local/lib -lpng16 -L/usr/local/lib/mysql -Wl,-rpath,/usr/local/lib -pthread /usr/local/lib/libpng.a -lm -lm true /wrkdirs/biology/blat/blatSrc//bin/x86_64/gfServer gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/gfServer' gmake -C hg/pslPretty gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/hg/pslPretty' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pslPretty.o -c pslPretty.c cc -O -g -o /wrkdirs/biology/blat/blatSrc//bin/x86_64/pslPretty pslPretty.o ../../lib/x86_64/jkweb.a -L/usr/local/lib/mysql -lmysqlclient -pthread -lm -lstdc++ -lrt -lm -L/usr/local/lib -L/usr/local/lib -lpng16 -L/usr/local/lib/mysql -Wl,-rpath,/usr/local/lib -pthread /usr/local/lib/libpng.a -lm true /wrkdirs/biology/blat/blatSrc//bin/x86_64/pslPretty gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/hg/pslPretty' gmake -C hg/pslReps gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/hg/pslReps' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pslReps.o -c pslReps.c pslReps.c: In function 'processBestSingle': pslReps.c:324:13: warning: variable 'bestPsl' set but not used [-Wunused-but-set-variable] struct psl *bestPsl = NULL, *psl; ^ cc -O -g -o /wrkdirs/biology/blat/blatSrc//bin/x86_64/pslReps pslReps.o ../../lib/x86_64/jkweb.a -L/usr/local/lib/mysql -lmysqlclient -pthread -lm -lstdc++ -lrt -lm -L/usr/local/lib -L/usr/local/lib -lpng16 -L/usr/local/lib/mysql -Wl,-rpath,/usr/local/lib -pthread /usr/local/lib/libpng.a -lm true /wrkdirs/biology/blat/blatSrc//bin/x86_64/pslReps gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/hg/pslReps' gmake -C hg/pslSort gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/hg/pslSort' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o pslSort.o -c pslSort.c cc -O -g -o /wrkdirs/biology/blat/blatSrc//bin/x86_64/pslSort pslSort.o ../../lib/x86_64/jkweb.a -L/usr/local/lib/mysql -lmysqlclient -pthread -lm -lstdc++ -lrt -lm -L/usr/local/lib -L/usr/local/lib -lpng16 -L/usr/local/lib/mysql -Wl,-rpath,/usr/local/lib -pthread /usr/local/lib/libpng.a -lm true /wrkdirs/biology/blat/blatSrc//bin/x86_64/pslSort gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/hg/pslSort' gmake -C utils/nibFrag gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/utils/nibFrag' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o nibFrag.o -c nibFrag.c cc -O -g -o /wrkdirs/biology/blat/blatSrc//bin/x86_64/nibFrag nibFrag.o ../../lib/x86_64/jkweb.a -L/usr/local/lib/mysql -lmysqlclient -pthread -lm -lstdc++ -lrt -lm -L/usr/local/lib -L/usr/local/lib -lpng16 -L/usr/local/lib/mysql -Wl,-rpath,/usr/local/lib -pthread /usr/local/lib/libpng.a -lm true /wrkdirs/biology/blat/blatSrc//bin/x86_64/nibFrag gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/utils/nibFrag' gmake -C utils/faToNib gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/utils/faToNib' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o faToNib.o -c faToNib.c cc -O -g -o /wrkdirs/biology/blat/blatSrc//bin/x86_64/faToNib faToNib.o ../../lib/x86_64/jkweb.a -L/usr/local/lib/mysql -lmysqlclient -pthread -lm -lstdc++ -lrt -lm -L/usr/local/lib -L/usr/local/lib -lpng16 -L/usr/local/lib/mysql -Wl,-rpath,/usr/local/lib -pthread /usr/local/lib/libpng.a -lm -lm true /wrkdirs/biology/blat/blatSrc//bin/x86_64/faToNib gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/utils/faToNib' gmake -C utils/faToTwoBit gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/utils/faToTwoBit' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o faToTwoBit.o -c faToTwoBit.c cc -O -g -o /wrkdirs/biology/blat/blatSrc//bin/x86_64/faToTwoBit faToTwoBit.o ../../lib/x86_64/jkweb.a -L/usr/local/lib/mysql -lmysqlclient -pthread -lm -lstdc++ -lrt -lm -L/usr/local/lib -L/usr/local/lib -lpng16 -L/usr/local/lib/mysql -Wl,-rpath,/usr/local/lib -pthread /usr/local/lib/libpng.a -lm -lm true /wrkdirs/biology/blat/blatSrc//bin/x86_64/faToTwoBit gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/utils/faToTwoBit' gmake -C utils/twoBitToFa gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/utils/twoBitToFa' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o twoBitToFa.o -c twoBitToFa.c cc -O -g -o /wrkdirs/biology/blat/blatSrc//bin/x86_64/twoBitToFa twoBitToFa.o ../../lib/x86_64/jkweb.a -L/usr/local/lib/mysql -lmysqlclient -pthread -lm -lstdc++ -lrt -lm -L/usr/local/lib -L/usr/local/lib -lpng16 -L/usr/local/lib/mysql -Wl,-rpath,/usr/local/lib -pthread /usr/local/lib/libpng.a -lm -lm true /wrkdirs/biology/blat/blatSrc//bin/x86_64/twoBitToFa gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/utils/twoBitToFa' gmake -C utils/twoBitInfo gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/utils/twoBitInfo' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o twoBitInfo.o -c twoBitInfo.c cc -O -g -o /wrkdirs/biology/blat/blatSrc//bin/x86_64/twoBitInfo twoBitInfo.o ../../lib/x86_64/jkweb.a -L/usr/local/lib/mysql -lmysqlclient -pthread -lm -lstdc++ -lrt -lm -L/usr/local/lib -L/usr/local/lib -lpng16 -L/usr/local/lib/mysql -Wl,-rpath,/usr/local/lib -pthread /usr/local/lib/libpng.a -lm -lm true /wrkdirs/biology/blat/blatSrc//bin/x86_64/twoBitInfo gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/utils/twoBitInfo' gmake -C webBlat gmake[2]: Entering directory '/wrkdirs/biology/blat/blatSrc/webBlat' cc -O -g -pipe -I/usr/local/include -O2 -fno-strict-aliasing -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/local/include/libpng16 -o webBlat.o -c webBlat.c cc -O -g -o webBlat webBlat.o ../lib/x86_64/jkOwnLib.a ../lib/x86_64/jkweb.a -L/usr/local/lib -L/usr/local/lib -lpng16 -L/usr/local/lib/mysql -Wl,-rpath,/usr/local/lib -pthread /usr/local/lib/libpng.a -lm true webBlat gmake[2]: Leaving directory '/wrkdirs/biology/blat/blatSrc/webBlat' gmake[1]: Leaving directory '/wrkdirs/biology/blat/blatSrc' =========================================================================== =================================================== ===> blat-36 depends on file: /usr/local/lib/libcrypto.so.38 - found =========================================================================== =================================================== ===> Staging for blat-36 ===> Generating temporary packing list (cd /wrkdirs/biology/blat/blatSrc/bin/x86_64 && install -s -m 555 blat /wrkdirs/biology/blat/stage/usr/local/bin) (cd /wrkdirs/biology/blat/blatSrc/bin/x86_64 && install -s -m 555 faToNib /wrkdirs/biology/blat/stage/usr/local/bin) (cd /wrkdirs/biology/blat/blatSrc/bin/x86_64 && install -s -m 555 faToTwoBit /wrkdirs/biology/blat/stage/usr/local/bin) (cd /wrkdirs/biology/blat/blatSrc/bin/x86_64 && install -s -m 555 gfClient /wrkdirs/biology/blat/stage/usr/local/bin) (cd /wrkdirs/biology/blat/blatSrc/bin/x86_64 && install -s -m 555 gfServer /wrkdirs/biology/blat/stage/usr/local/bin) (cd /wrkdirs/biology/blat/blatSrc/bin/x86_64 && install -s -m 555 nibFrag /wrkdirs/biology/blat/stage/usr/local/bin) (cd /wrkdirs/biology/blat/blatSrc/bin/x86_64 && install -s -m 555 pslPretty /wrkdirs/biology/blat/stage/usr/local/bin) (cd /wrkdirs/biology/blat/blatSrc/bin/x86_64 && install -s -m 555 pslReps /wrkdirs/biology/blat/stage/usr/local/bin) (cd /wrkdirs/biology/blat/blatSrc/bin/x86_64 && install -s -m 555 pslSort /wrkdirs/biology/blat/stage/usr/local/bin) (cd /wrkdirs/biology/blat/blatSrc/bin/x86_64 && install -s -m 555 twoBitInfo /wrkdirs/biology/blat/stage/usr/local/bin) (cd /wrkdirs/biology/blat/blatSrc/bin/x86_64 && install -s -m 555 twoBitToFa /wrkdirs/biology/blat/stage/usr/local/bin) (cd /wrkdirs/biology/blat/blatSrc/webBlat && install -s -m 555 webBlat /wrkdirs/biology/blat/stage/usr/local/lib/blat/webBlat) (cd /wrkdirs/biology/blat/blatSrc/webBlat && install -m 0644 install.txt /wrkdirs/biology/blat/stage/usr/local/lib/blat/webBlat) ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for blat-36 file sizes/checksums [13]: . done packing files [13]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for blat-36 build of biology/blat ended at Wed Oct 5 13:35:43 PDT 2016 build time: 00:00:55