=> Building science/silo build started at Mon Sep 18 14:52:27 PDT 2017 port directory: /usr/ports/science/silo building for: DragonFly pkgbox64.dragonflybsd.org 4.9-DEVELOPMENT DragonFly v4.9.0.503.g33553-DEVELOPMENT #21: Fri Aug 4 16:51:32 PDT 2017 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: dbaio@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/Release48-default/ref/../04//usr/ports/science/silo/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400908 Jail OSVERSION: 400801 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release48-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=silo-4.10.2_5 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release48-default/ref/.p/pool MASTERNAME=Release48-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for silo-4.10.2_5: FORTRAN=off: Fortran language support HDF5=on: HDF-5 data format support PYTHON=off: Python bindings or support QT4=off: Qt 4 toolkit support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --enable-shared --disable-static --disable-fortran --with-hdf5=/usr/local/include,/usr/local/lib --disable-pythonmodule --disable-silex --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/science/silo XDG_CONFIG_HOME=/wrkdirs/science/silo HOME=/wrkdirs/science/silo TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/science/silo XDG_CONFIG_HOME=/wrkdirs/science/silo HOME=/wrkdirs/science/silo TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- FORTRAN="@comment " NO_FORTRAN="" HDF5="" NO_HDF5="@comment " SUFX_HDF5="h5" PYTHON="@comment " NO_PYTHON="" QT4="@comment " NO_QT4="" OSREL=4.8 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/silo" EXAMPLESDIR="share/examples/silo" DATADIR="share/silo" WWWDIR="www/silo" ETCDIR="etc/silo" --End PLIST_SUB-- --SUB_LIST-- FORTRAN="@comment " NO_FORTRAN="" HDF5="" NO_HDF5="@comment " PYTHON="@comment " NO_PYTHON="" QT4="@comment " NO_QT4="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/silo DOCSDIR=/usr/local/share/doc/silo EXAMPLESDIR=/usr/local/share/examples/silo WWWDIR=/usr/local/www/silo ETCDIR=/usr/local/etc/silo --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===> silo-4.10.2_5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz Installing pkg-1.10.1... Extracting pkg-1.10.1: .......... done ===> silo-4.10.2_5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of silo-4.10.2_5 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by silo-4.10.2_5 for building =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by silo-4.10.2_5 for building => SHA256 Checksum OK for silo-4.10.2-bsd.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by silo-4.10.2_5 for building ===> Extracting for silo-4.10.2_5 => SHA256 Checksum OK for silo-4.10.2-bsd.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for silo-4.10.2_5 ===> Applying ports patches for silo-4.10.2_5 =========================================================================== =================================================== ===> silo-4.10.2_5 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz Installing gmake-4.2.1_1... `-- Installing indexinfo-0.2.6... `-- Extracting indexinfo-0.2.6: .... done `-- Installing gettext-runtime-0.19.8.1_1... `-- Extracting gettext-runtime-0.19.8.1_1: .......... done Extracting gmake-4.2.1_1: .......... done ===> silo-4.10.2_5 depends on executable: gmake - found ===> Returning to build of silo-4.10.2_5 =========================================================================== =================================================== ===> silo-4.10.2_5 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.10.1_1.txz Installing hdf5-1.10.1_1... `-- Installing hdf-szip-2.1_2... `-- Extracting hdf-szip-2.1_2: ........ done Extracting hdf5-1.10.1_1: .......... done ===> silo-4.10.2_5 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of silo-4.10.2_5 ===> silo-4.10.2_5 depends on shared library: libreadline.so.7 - not found ===> Installing existing package /packages/All/readline-7.0.3.txz Installing readline-7.0.3... `-- Installing ncurses-6.0_3... `-- Extracting ncurses-6.0_3: .......... done Extracting readline-7.0.3: .......... done Message from ncurses-6.0_3: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> silo-4.10.2_5 depends on shared library: libreadline.so.7 - found (/usr/local/lib/libreadline.so.7) ===> Returning to build of silo-4.10.2_5 =========================================================================== =================================================== ===> Configuring for silo-4.10.2_5 configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64-portbld-dragonfly4.8 checking host system type... x86_64-portbld-dragonfly4.8 checking what version the package is... 4.10.2 checking for site config host file... no checking for config-site x86_64-portbld-dragonfly4.8... no checking for config-site x86_64-portbld-freebsd... no checking for config-site portbld-dragonfly4.8... no checking for config-site portbld-freebsd... no checking for config-site x86_64-dragonfly4.8... no checking for config-site x86_64-freebsd... no checking for config-site x86_64-portbld... no checking for config-site dragonfly4.8... no checking for config-site freebsd... no checking for config-site portbld... no checking for config-site x86_64... found checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for style of include used by gmake... GNU checking dependency style of c++... gcc3 checking for gcc... cc checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking dependency style of cc... gcc3 checking how to run the C preprocessor... cpp checking whether gmake sets $(MAKE)... (cached) yes checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether c++ accepts -g... (cached) yes checking dependency style of c++... (cached) gcc3 checking how to run the C++ preprocessor... c++ -E checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking whether we are using the GNU Fortran compiler... no checking whether accepts -g... no checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly4.8 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for ld used by c++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly4.8 ld.so checking how to hardcode library paths into programs... immediate checking for library containing strerror... none required checking for hzip... hzip compression not available in BSD version checking for fpzip... fpzip compression not available in BSD version checking compiler optimization... disabled checking whether C compiler accepts "-D_LARGEFILE_SOURCE"... yes checking whether C compiler accepts "-D_LARGEFILE64_SOURCE"... yes checking whether C compiler accepts "-D_FILE_OFFSET_BITS=64"... yes checking whether C compiler accepts "-Wdeclaration-after-statement"... yes checking size of off64_t... 0 checking for a BSD-compatible install... /usr/bin/install -c checking for sys/time.h... (cached) yes checking for stdarg.h... (cached) yes checking for sys/stat.h... (cached) yes checking for fcntl.h... (cached) yes checking for sys/fcntl.h... (cached) yes checking fnmatch.h usability... yes checking fnmatch.h presence... yes checking for fnmatch.h... yes checking ieeefp.h usability... yes checking ieeefp.h presence... yes checking for ieeefp.h... yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for ANSI C header files... (cached) yes checking for fclose function pointer... yes checking for fflush function pointer... yes checking for fopen function pointer... yes checking for fprintf function pointer... yes checking for fread function pointer... yes checking for fseek function pointer... yes checking for setvbuf function pointer... yes checking for ftell function pointer... yes checking for fwrite function pointer... yes checking for memmove... (cached) yes checking for fnmatch... yes checking for isnan... yes checking for fpclass... no checking for strerror... (cached) yes checking if setjmp and longjmp work... yes checking for cos in -lm... yes checking for szlib... suppressed checking for hdf5... configure: checking for hdf5 and supporting libraries... checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5open... yes checking for a readline compatible library... -lreadline checking readline.h usability... no checking readline.h presence... no checking for readline.h... no checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking whether readline supports history... yes checking history.h usability... no checking history.h presence... no checking for history.h... no checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating SiloWindows/Makefile config.status: creating svn_bin/Makefile config.status: creating config/Makefile config.status: creating config-site/Makefile config.status: creating docs/Makefile config.status: creating src/Makefile config.status: creating src/score/Makefile config.status: creating src/pdb/Makefile config.status: creating src/silo/Makefile config.status: creating src/silo/silo.h config.status: creating src/debug/Makefile config.status: creating src/netcdf/Makefile config.status: creating src/pdb_drv/Makefile config.status: creating src/pdbp_drv/Makefile config.status: creating src/hdf5_drv/Makefile config.status: creating src/taurus/Makefile config.status: creating src/unknown/Makefile config.status: creating src/filters/Makefile config.status: creating tests/Makefile config.status: creating tools/Makefile config.status: creating tools/browser/Makefile config.status: creating tools/python/Makefile config.status: creating tools/silex/Makefile config.status: creating tools/silock/Makefile config.status: creating tools/json/Makefile config.status: creating tools/mapred/Makefile config.status: creating src/libsiloh5.settings config.status: creating config.h config.status: executing tests/atconfig commands config.status: executing depfiles commands config.status: executing libtool commands SUMMARY OF THE Silo with HDF5 CONFIGURATION ================================= Silo Version: 4.10.2 Configured on: Mon Sep 18 21:52:44 UTC 2017 Configured by: root@pkgbox64.dragonflybsd.org Configure command: ./configure '--enable-shared' '--disable-static' '--disable-fortran' '--with-hdf5=/usr/local/include,/usr/local/lib' '--disable-pythonmodule' '--disable-silex' '--prefix=/usr/local' '--localstatedir=/var' '--mandir=/usr/local/man' '--infodir=/usr/local/info/' '--build=x86_64-portbld-dragonfly4.8' 'build_alias=x86_64-portbld-dragonfly4.8' 'CXX=c++' 'CXXFLAGS= -pipe -O2 -fno-strict-aliasing' 'LDFLAGS= -L/usr/local/lib' 'LIBS=' 'CPPFLAGS=-I/usr/local/include' 'CC=cc' 'CFLAGS=-pipe -O2 -fno-strict-aliasing' 'CPP=cpp' Host system: x86_64-portbld-dragonfly4.8 Build system: x86_64-portbld-dragonfly4.8 Installation point: /usr/local Source directory: @UsingSrcDir@ Archiver: ar Ranlib: ranlib Configure Summary Compiling Options: C Compiler /usr/bin/cc CPPFLAGS -I/usr/local/include -I/usr/local/include CFLAGS -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement LDFLAGS -L/usr/local/lib -L/usr/local/lib LIBS -lhdf5 -lm Languages: C++ Compiler /usr/bin/c++ CXXFLAGS -pipe -O2 -fno-strict-aliasing Fortran Compiler FCFLAGS FCLIBS Features: Browser @UsingBrowser@ Readline @UsingReadline@ HDF5 @UsingHDF5@ Silex @UsingSilex@ Qt @UsingQt@ Qt moc Compiler Qt CXXFLAGS Qt LIBS Python @UsingPython@ Python Compiler Python CPPFLAGS =========================================================================== =================================================== ===> Building for silo-4.10.2_5 gmake[1]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd' gmake all-recursive gmake[2]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd' Making all in . gmake[3]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd' gmake[3]: Nothing to be done for 'all-am'. gmake[3]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd' Making all in src gmake[3]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' gmake all-recursive gmake[4]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' Making all in score gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/score' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT memmove.lo -MD -MP -MF .deps/memmove.Tpo -c -o memmove.lo memmove.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctla.lo -MD -MP -MF .deps/scctla.Tpo -c -o scctla.lo scctla.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctl.lo -MD -MP -MF .deps/scctl.Tpo -c -o scctl.lo scctl.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT schash.lo -MD -MP -MF .deps/schash.Tpo -c -o schash.lo schash.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scstr.lo -MD -MP -MF .deps/scstr.Tpo -c -o scstr.lo scstr.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scstr.lo -MD -MP -MF .deps/scstr.Tpo -c scstr.c -fPIC -DPIC -o .libs/scstr.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctl.lo -MD -MP -MF .deps/scctl.Tpo -c scctl.c -fPIC -DPIC -o .libs/scctl.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctla.lo -MD -MP -MF .deps/scctla.Tpo -c scctla.c -fPIC -DPIC -o .libs/scctla.o mv -f .deps/scstr.Tpo .deps/scstr.Plo mv -f .deps/scctl.Tpo .deps/scctl.Plo mv -f .deps/scctla.Tpo .deps/scctla.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT memmove.lo -MD -MP -MF .deps/memmove.Tpo -c memmove.c -fPIC -DPIC -o .libs/memmove.o mv -f .deps/memmove.Tpo .deps/memmove.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT schash.lo -MD -MP -MF .deps/schash.Tpo -c schash.c -fPIC -DPIC -o .libs/schash.o mv -f .deps/schash.Tpo .deps/schash.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/local/lib -L/usr/local/lib -o libsilo_score.la memmove.lo scctla.lo scctl.lo schash.lo scstr.lo -lhdf5 -lm libtool: link: ar cru .libs/libsilo_score.a .libs/memmove.o .libs/scctla.o .libs/scctl.o .libs/schash.o .libs/scstr.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsilo_score.a libtool: link: ( cd ".libs" && rm -f "libsilo_score.la" && ln -s "../libsilo_score.la" "libsilo_score.la" ) gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/score' Making all in pdb gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb' cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT detect.o -MD -MP -MF .deps/detect.Tpo -c -o detect.o detect.c mv -f .deps/detect.Tpo .deps/detect.Po cc -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -o detect detect.o ./detect >> pdform.h gmake all-am gmake[6]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdb.lo -MD -MP -MF .deps/pdb.Tpo -c -o pdb.lo pdb.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbdir.lo -MD -MP -MF .deps/pdbdir.Tpo -c -o pdbdir.lo pdbdir.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbio.lo -MD -MP -MF .deps/pdbio.Tpo -c -o pdbio.lo pdbio.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbmm.lo -MD -MP -MF .deps/pdbmm.Tpo -c -o pdbmm.lo pdbmm.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbx.lo -MD -MP -MF .deps/pdbx.Tpo -c -o pdbx.lo pdbx.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbmm.lo -MD -MP -MF .deps/pdbmm.Tpo -c pdbmm.c -fPIC -DPIC -o .libs/pdbmm.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbio.lo -MD -MP -MF .deps/pdbio.Tpo -c pdbio.c -fPIC -DPIC -o .libs/pdbio.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdb.lo -MD -MP -MF .deps/pdb.Tpo -c pdb.c -fPIC -DPIC -o .libs/pdb.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbdir.lo -MD -MP -MF .deps/pdbdir.Tpo -c pdbdir.c -fPIC -DPIC -o .libs/pdbdir.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbx.lo -MD -MP -MF .deps/pdbx.Tpo -c pdbx.c -fPIC -DPIC -o .libs/pdbx.o mv -f .deps/pdbio.Tpo .deps/pdbio.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 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-I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdpath.lo -MD -MP -MF .deps/pdpath.Tpo -c -o pdpath.lo pdpath.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdpath.lo -MD -MP -MF .deps/pdpath.Tpo -c pdpath.c -fPIC -DPIC -o .libs/pdpath.o mv -f .deps/pdmemb.Tpo .deps/pdmemb.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdrdwr.lo -MD -MP -MF .deps/pdrdwr.Tpo -c -o pdrdwr.lo pdrdwr.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdrdwr.lo -MD -MP -MF .deps/pdrdwr.Tpo -c pdrdwr.c -fPIC -DPIC -o .libs/pdrdwr.o mv -f .deps/pdconv.Tpo .deps/pdconv.Plo mv -f .deps/pdrdwr.Tpo .deps/pdrdwr.Plo mv -f .deps/pdb.Tpo .deps/pdb.Plo mv -f .deps/pdpath.Tpo .deps/pdpath.Plo mv -f .deps/pdlow.Tpo .deps/pdlow.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/local/lib -L/usr/local/lib -o libsilo_pdb.la pdb.lo pdbdir.lo pdbio.lo pdbmm.lo pdbx.lo pdconv.lo pdlow.lo pdmemb.lo pdpath.lo pdrdwr.lo -lhdf5 -lm libtool: link: ar cru .libs/libsilo_pdb.a .libs/pdb.o .libs/pdbdir.o .libs/pdbio.o .libs/pdbmm.o .libs/pdbx.o .libs/pdconv.o .libs/pdlow.o .libs/pdmemb.o .libs/pdpath.o .libs/pdrdwr.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsilo_pdb.a libtool: link: ( cd ".libs" && rm -f "libsilo_pdb.la" && ln -s "../libsilo_pdb.la" "libsilo_pdb.la" ) gmake[6]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb' gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb' Making all in silo gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/silo' gmake all-am gmake[6]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/silo' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT alloc.lo -MD -MP -MF .deps/alloc.Tpo -c -o alloc.lo alloc.c /bin/sh ../../libtool --tag=CC --mode=compile cc 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-I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT extface.lo -MD -MP -MF .deps/extface.Tpo -c extface.c -fPIC -DPIC -o .libs/extface.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT alloc.lo -MD -MP -MF .deps/alloc.Tpo -c alloc.c -fPIC -DPIC -o .libs/alloc.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silo_ns.lo -MD -MP -MF .deps/silo_ns.Tpo -c silo_ns.c -fPIC -DPIC -o .libs/silo_ns.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/local/include -I/usr/local/include -pipe -O2 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-Wdeclaration-after-statement -MT silo_debug.lo -MD -MP -MF .deps/silo_debug.Tpo -c silo_debug.c -fPIC -DPIC -o .libs/silo_debug.o mv -f .deps/silo_debug.Tpo .deps/silo_debug.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/local/lib -L/usr/local/lib -o libsilo_debug.la silo_debug.lo -lhdf5 -lm libtool: link: ar cru .libs/libsilo_debug.a .libs/silo_debug.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsilo_debug.a libtool: link: ( cd ".libs" && rm -f "libsilo_debug.la" && ln -s "../libsilo_debug.la" "libsilo_debug.la" ) gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/debug' Making all in netcdf gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/netcdf' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT api.lo -MD -MP -MF .deps/api.Tpo -c -o api.lo api.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT ent.lo -MD -MP -MF .deps/ent.Tpo -c -o ent.lo ent.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT netcdf.lo -MD -MP -MF .deps/netcdf.Tpo -c -o netcdf.lo netcdf.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT obj.lo -MD -MP -MF .deps/obj.Tpo -c -o obj.lo obj.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silo_netcdf.lo -MD -MP -MF .deps/silo_netcdf.Tpo -c -o silo_netcdf.lo silo_netcdf.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT api.lo -MD -MP -MF .deps/api.Tpo -c api.c -fPIC -DPIC -o .libs/api.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT netcdf.lo -MD -MP -MF .deps/netcdf.Tpo -c netcdf.c -fPIC -DPIC -o .libs/netcdf.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT obj.lo -MD -MP -MF .deps/obj.Tpo -c obj.c -fPIC -DPIC -o .libs/obj.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT ent.lo -MD -MP -MF .deps/ent.Tpo -c ent.c -fPIC -DPIC -o .libs/ent.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silo_netcdf.lo -MD -MP -MF .deps/silo_netcdf.Tpo -c silo_netcdf.c -fPIC -DPIC -o .libs/silo_netcdf.o mv -f .deps/netcdf.Tpo .deps/netcdf.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT table.lo -MD -MP -MF .deps/table.Tpo -c -o table.lo table.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT table.lo -MD -MP -MF .deps/table.Tpo -c table.c -fPIC -DPIC -o .libs/table.o mv -f .deps/obj.Tpo .deps/obj.Plo mv -f .deps/api.Tpo .deps/api.Plo mv -f .deps/ent.Tpo .deps/ent.Plo mv -f .deps/table.Tpo .deps/table.Plo mv -f .deps/silo_netcdf.Tpo .deps/silo_netcdf.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/local/lib -L/usr/local/lib -o libsilo_netcdf.la api.lo ent.lo netcdf.lo obj.lo silo_netcdf.lo table.lo -lhdf5 -lm libtool: link: ar cru .libs/libsilo_netcdf.a .libs/api.o .libs/ent.o .libs/netcdf.o .libs/obj.o .libs/silo_netcdf.o .libs/table.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsilo_netcdf.a libtool: link: ( cd ".libs" && rm -f "libsilo_netcdf.la" && ln -s "../libsilo_netcdf.la" "libsilo_netcdf.la" ) gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/netcdf' Making all in pdb_drv gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb_drv' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silo_pdb.lo -MD -MP -MF .deps/silo_pdb.Tpo -c -o silo_pdb.lo silo_pdb.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silo_pdb.lo -MD -MP -MF .deps/silo_pdb.Tpo -c silo_pdb.c -fPIC -DPIC -o .libs/silo_pdb.o mv -f .deps/silo_pdb.Tpo .deps/silo_pdb.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/local/lib -L/usr/local/lib -o libsilo_pdb_drv.la silo_pdb.lo -lhdf5 -lm libtool: link: ar cru .libs/libsilo_pdb_drv.a .libs/silo_pdb.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsilo_pdb_drv.a libtool: link: ( cd ".libs" && rm -f "libsilo_pdb_drv.la" && ln -s "../libsilo_pdb_drv.la" "libsilo_pdb_drv.la" ) gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb_drv' Making all in hdf5_drv gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/hdf5_drv' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silo_hdf5.lo -MD -MP -MF .deps/silo_hdf5.Tpo -c -o silo_hdf5.lo silo_hdf5.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT H5FDsilo.lo -MD -MP -MF .deps/H5FDsilo.Tpo -c -o H5FDsilo.lo H5FDsilo.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT H5FDsilo.lo -MD -MP -MF .deps/H5FDsilo.Tpo -c H5FDsilo.c -fPIC -DPIC -o .libs/H5FDsilo.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silo_hdf5.lo -MD -MP -MF .deps/silo_hdf5.Tpo -c silo_hdf5.c -fPIC -DPIC -o .libs/silo_hdf5.o H5FDsilo.c:491:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] H5FD_silo_sb_size, /*sb_size */ ^ H5FDsilo.c:491:5: note: (near initialization for 'H5FD_silo_g.terminate') H5FDsilo.c:492:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] H5FD_silo_sb_encode, /*sb_encode */ ^ H5FDsilo.c:492:5: note: (near initialization for 'H5FD_silo_g.sb_size') H5FDsilo.c:493:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] H5FD_silo_sb_decode, /*sb_decode */ ^ H5FDsilo.c:493:5: note: (near initialization for 'H5FD_silo_g.sb_encode') H5FDsilo.c:495:5: warning: initialization makes integer from pointer without a cast [-Wint-conversion] NULL, /*fapl_get */ ^ H5FDsilo.c:495:5: note: (near initialization for 'H5FD_silo_g.fapl_size') H5FDsilo.c:499:5: warning: initialization makes integer from pointer without a cast [-Wint-conversion] NULL, /*dxpl_copy */ ^ H5FDsilo.c:499:5: note: (near initialization for 'H5FD_silo_g.dxpl_size') H5FDsilo.c:501:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] H5FD_silo_open, /*open */ ^ H5FDsilo.c:501:5: note: (near initialization for 'H5FD_silo_g.dxpl_free') H5FDsilo.c:502:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] H5FD_silo_close, /*close */ ^ H5FDsilo.c:502:5: note: (near initialization for 'H5FD_silo_g.open') H5FDsilo.c:503:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] H5FD_silo_cmp, /*cmp */ ^ H5FDsilo.c:503:5: note: (near initialization for 'H5FD_silo_g.close') H5FDsilo.c:504:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] H5FD_silo_query, /*query */ ^ H5FDsilo.c:504:5: note: (near initialization for 'H5FD_silo_g.cmp') H5FDsilo.c:508:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] H5FD_silo_get_eoa, /*get_eoa */ ^ H5FDsilo.c:508:5: note: (near initialization for 'H5FD_silo_g.free') H5FDsilo.c:509:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] H5FD_silo_set_eoa, /*set_eoa */ ^ H5FDsilo.c:509:5: note: (near initialization for 'H5FD_silo_g.get_eoa') H5FDsilo.c:510:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] H5FD_silo_get_eof, /*get_eof */ ^ H5FDsilo.c:510:5: note: (near initialization for 'H5FD_silo_g.set_eoa') H5FDsilo.c:511:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] H5FD_silo_get_handle, /*get_handle */ ^ H5FDsilo.c:511:5: note: (near initialization for 'H5FD_silo_g.get_eof') H5FDsilo.c:512:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] H5FD_silo_read, /*read */ ^ H5FDsilo.c:512:5: note: (near initialization for 'H5FD_silo_g.get_handle') H5FDsilo.c:513:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] H5FD_silo_write, /*write */ ^ H5FDsilo.c:513:5: note: (near initialization for 'H5FD_silo_g.read') H5FDsilo.c:518:5: warning: braces around scalar initializer H5FD_FLMAP_SINGLE /*fl_map */ ^ H5FDsilo.c:518:5: note: (near initialization for 'H5FD_silo_g.unlock') In file included from /usr/local/include/hdf5.h:28:0, from H5FDsilo.c:62: /usr/local/include/H5FDpublic.h:116:5: warning: initialization makes pointer from integer without a cast [-Wint-conversion] H5FD_MEM_SUPER, /*default*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ /usr/local/include/H5FDpublic.h:116:5: note: (near initialization for 'H5FD_silo_g.unlock') H5FD_MEM_SUPER, /*default*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ /usr/local/include/H5FDpublic.h:117:5: warning: excess elements in scalar initializer H5FD_MEM_SUPER, /*super*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ /usr/local/include/H5FDpublic.h:117:5: note: (near initialization for 'H5FD_silo_g.unlock') H5FD_MEM_SUPER, /*super*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ /usr/local/include/H5FDpublic.h:118:5: warning: excess elements in scalar initializer H5FD_MEM_SUPER, /*btree*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ /usr/local/include/H5FDpublic.h:118:5: note: (near initialization for 'H5FD_silo_g.unlock') H5FD_MEM_SUPER, /*btree*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ /usr/local/include/H5FDpublic.h:119:5: warning: excess elements in scalar initializer H5FD_MEM_SUPER, /*draw*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ /usr/local/include/H5FDpublic.h:119:5: note: (near initialization for 'H5FD_silo_g.unlock') H5FD_MEM_SUPER, /*draw*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ /usr/local/include/H5FDpublic.h:120:5: warning: excess elements in scalar initializer H5FD_MEM_SUPER, /*gheap*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ /usr/local/include/H5FDpublic.h:120:5: note: (near initialization for 'H5FD_silo_g.unlock') H5FD_MEM_SUPER, /*gheap*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ /usr/local/include/H5FDpublic.h:121:5: warning: excess elements in scalar initializer H5FD_MEM_SUPER, /*lheap*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ /usr/local/include/H5FDpublic.h:121:5: note: (near initialization for 'H5FD_silo_g.unlock') H5FD_MEM_SUPER, /*lheap*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ /usr/local/include/H5FDpublic.h:122:5: warning: excess elements in scalar initializer H5FD_MEM_SUPER /*ohdr*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ /usr/local/include/H5FDpublic.h:122:5: note: (near initialization for 'H5FD_silo_g.unlock') H5FD_MEM_SUPER /*ohdr*/ \ ^ H5FDsilo.c:518:5: note: in expansion of macro 'H5FD_FLMAP_SINGLE' H5FD_FLMAP_SINGLE /*fl_map */ ^ silo_hdf5.c: In function 'db_hdf5_process_file_options': silo_hdf5.c:4667:2: warning: #warning REMOVED WINDOWS SPECIFIC CHECK [-Wcpp] #warning REMOVED WINDOWS SPECIFIC CHECK ^ silo_hdf5.c:4808:2: warning: #warning REMOVED WINDOWS SPECIFIC CHECK [-Wcpp] #warning REMOVED WINDOWS SPECIFIC CHECK ^ mv -f .deps/H5FDsilo.Tpo .deps/H5FDsilo.Plo mv -f .deps/silo_hdf5.Tpo .deps/silo_hdf5.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/local/lib -L/usr/local/lib -o libsilo_hdf5_drv.la silo_hdf5.lo H5FDsilo.lo -lhdf5 -lm libtool: link: ar cru .libs/libsilo_hdf5_drv.a .libs/silo_hdf5.o .libs/H5FDsilo.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsilo_hdf5_drv.a libtool: link: ( cd ".libs" && rm -f "libsilo_hdf5_drv.la" && ln -s "../libsilo_hdf5_drv.la" "libsilo_hdf5_drv.la" ) gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/hdf5_drv' Making all in taurus gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/taurus' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silo_taurus.lo -MD -MP -MF .deps/silo_taurus.Tpo -c -o silo_taurus.lo silo_taurus.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT taurus.lo -MD -MP -MF .deps/taurus.Tpo -c -o taurus.lo taurus.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT taurus.lo -MD -MP -MF .deps/taurus.Tpo -c taurus.c -fPIC -DPIC -o .libs/taurus.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silo_taurus.lo -MD -MP -MF .deps/silo_taurus.Tpo -c silo_taurus.c -fPIC -DPIC -o .libs/silo_taurus.o mv -f .deps/taurus.Tpo .deps/taurus.Plo mv -f .deps/silo_taurus.Tpo .deps/silo_taurus.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/local/lib -L/usr/local/lib -o libsilo_taurus.la silo_taurus.lo taurus.lo -lhdf5 -lm libtool: link: ar cru .libs/libsilo_taurus.a .libs/silo_taurus.o .libs/taurus.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsilo_taurus.a libtool: link: ( cd ".libs" && rm -f "libsilo_taurus.la" && ln -s "../libsilo_taurus.la" "libsilo_taurus.la" ) gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/taurus' Making all in unknown gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/unknown' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silo_unknown.lo -MD -MP -MF .deps/silo_unknown.Tpo -c -o silo_unknown.lo silo_unknown.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silo_unknown.lo -MD -MP -MF .deps/silo_unknown.Tpo -c silo_unknown.c -fPIC -DPIC -o .libs/silo_unknown.o mv -f .deps/silo_unknown.Tpo .deps/silo_unknown.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/local/lib -L/usr/local/lib -o libsilo_unknown.la silo_unknown.lo -lhdf5 -lm libtool: link: ar cru .libs/libsilo_unknown.a .libs/silo_unknown.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsilo_unknown.a libtool: link: ( cd ".libs" && rm -f "libsilo_unknown.la" && ln -s "../libsilo_unknown.la" "libsilo_unknown.la" ) gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/unknown' Making all in filters gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/filters' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT f_ale3d.lo -MD -MP -MF .deps/f_ale3d.Tpo -c -o f_ale3d.lo f_ale3d.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT f_sample.lo -MD -MP -MF .deps/f_sample.Tpo -c -o f_sample.lo f_sample.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT f_sample.lo -MD -MP -MF .deps/f_sample.Tpo -c f_sample.c -fPIC -DPIC -o .libs/f_sample.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT f_ale3d.lo -MD -MP -MF .deps/f_ale3d.Tpo -c f_ale3d.c -fPIC -DPIC -o .libs/f_ale3d.o mv -f .deps/f_sample.Tpo .deps/f_sample.Plo mv -f .deps/f_ale3d.Tpo .deps/f_ale3d.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/local/lib -L/usr/local/lib -o libsilo_filters.la f_ale3d.lo f_sample.lo -lhdf5 -lm libtool: link: ar cru .libs/libsilo_filters.a .libs/f_ale3d.o .libs/f_sample.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsilo_filters.a libtool: link: ( cd ".libs" && rm -f "libsilo_filters.la" && ln -s "../libsilo_filters.la" "libsilo_filters.la" ) gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/filters' Making all in . gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT siloh5_version.lo -MD -MP -MF .deps/siloh5_version.Tpo -c -o siloh5_version.lo siloh5_version.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT siloh5_version.lo -MD -MP -MF .deps/siloh5_version.Tpo -c siloh5_version.c -fPIC -DPIC -o .libs/siloh5_version.o mv -f .deps/siloh5_version.Tpo .deps/siloh5_version.Plo /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/local/lib -L/usr/local/lib -o libsiloh5.la -rpath /usr/local/lib siloh5_version.lo score/libsilo_score.la pdb/libsilo_pdb.la silo/libsilo_silo.la debug/libsilo_debug.la netcdf/libsilo_netcdf.la pdb_drv/libsilo_pdb_drv.la hdf5_drv/libsilo_hdf5_drv.la taurus/libsilo_taurus.la unknown/libsilo_unknown.la filters/libsilo_filters.la -lhdf5 -lm libtool: link: cc -shared .libs/siloh5_version.o -Wl,--whole-archive score/.libs/libsilo_score.a pdb/.libs/libsilo_pdb.a silo/.libs/libsilo_silo.a debug/.libs/libsilo_debug.a netcdf/.libs/libsilo_netcdf.a pdb_drv/.libs/libsilo_pdb_drv.a hdf5_drv/.libs/libsilo_hdf5_drv.a taurus/.libs/libsilo_taurus.a unknown/.libs/libsilo_unknown.a filters/.libs/libsilo_filters.a -Wl,--no-whole-archive -L/usr/local/lib -lhdf5 -lm -Wl,-soname -Wl,libsiloh5.so.0 -o .libs/libsiloh5.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libsiloh5.so.0" && ln -s "libsiloh5.so.0.0.0" "libsiloh5.so.0") libtool: link: (cd ".libs" && rm -f "libsiloh5.so" && ln -s "libsiloh5.so.0.0.0" "libsiloh5.so") libtool: link: ( cd ".libs" && rm -f "libsiloh5.la" && ln -s "../libsiloh5.la" "libsiloh5.la" ) gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' gmake[4]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' gmake[3]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' Making all in tools gmake[3]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools' Making all in . gmake[4]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools' gmake[4]: Nothing to be done for 'all-am'. gmake[4]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools' Making all in silock gmake[4]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools/silock' cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/local/include -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silock.o -MD -MP -MF .deps/silock.Tpo -c -o silock.o silock.c mv -f .deps/silock.Tpo .deps/silock.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -pipe -O2 -fno-strict-aliasing -L/usr/local/lib -L/usr/local/lib -o silock silock.o ../../src/libsiloh5.la -lhdf5 -lm libtool: link: c++ -pipe -O2 -fno-strict-aliasing -o .libs/silock silock.o -L/usr/local/lib ../../src/.libs/libsiloh5.so -lm -lhdf5 -Wl,-rpath -Wl,/usr/local/lib gmake[4]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools/silock' Making all in browser gmake[4]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools/browser' cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT array.o -MD -MP -MF .deps/array.Tpo -c -o array.o array.c cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT bif.o -MD -MP -MF .deps/bif.Tpo -c -o bif.o bif.c cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT browser.o -MD -MP -MF .deps/browser.Tpo -c -o browser.o browser.c cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT cons.o -MD -MP -MF .deps/cons.Tpo -c -o cons.o cons.c cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT file.o -MD -MP -MF .deps/file.Tpo -c -o file.o file.c array.c: In function 'ary_walk1': array.c:604:18: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] while ((void*) sentinel != memtmp[i]) ^ mv -f .deps/cons.Tpo .deps/cons.Po mv -f .deps/bif.Tpo .deps/bif.Po cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT func.o -MD -MP -MF .deps/func.Tpo -c -o func.o func.c cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT lex.o -MD -MP -MF .deps/lex.Tpo -c -o lex.o lex.c mv -f .deps/lex.Tpo .deps/lex.Po cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT num.o -MD -MP -MF .deps/num.Tpo -c -o num.o num.c mv -f .deps/num.Tpo .deps/num.Po cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT obj.o -MD -MP -MF .deps/obj.Tpo -c -o obj.o obj.c mv -f .deps/obj.Tpo .deps/obj.Po cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT output.o -MD -MP -MF .deps/output.Tpo -c -o output.o output.c mv -f .deps/func.Tpo .deps/func.Po cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT parse.o -MD -MP -MF .deps/parse.Tpo -c -o parse.o parse.c mv -f .deps/browser.Tpo .deps/browser.Po cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT prim.o -MD -MP -MF .deps/prim.Tpo -c -o prim.o prim.c mv -f .deps/output.Tpo .deps/output.Po cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT ptr.o -MD -MP -MF .deps/ptr.Tpo -c -o ptr.o ptr.c mv -f .deps/array.Tpo .deps/array.Po cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT range.o -MD -MP -MF .deps/range.Tpo -c -o range.o range.c mv -f .deps/ptr.Tpo .deps/ptr.Po cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT sdo.o -MD -MP -MF .deps/sdo.Tpo -c -o sdo.o sdo.c mv -f .deps/range.Tpo .deps/range.Po cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT stc.o -MD -MP -MF .deps/stc.Tpo -c -o stc.o stc.c mv -f .deps/sdo.Tpo .deps/sdo.Po cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT str.o -MD -MP -MF .deps/str.Tpo -c -o str.o str.c mv -f .deps/str.Tpo .deps/str.Po cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT switch.o -MD -MP -MF .deps/switch.Tpo -c -o switch.o switch.c mv -f .deps/prim.Tpo .deps/prim.Po cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I../../src/filters -I/usr/local/include -DPUBLIC_INIT_FILE=\"/usr/local/include/browser_rc\" -I../../src/filters -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT sym.o -MD -MP -MF .deps/sym.Tpo -c -o sym.o sym.c mv -f .deps/parse.Tpo .deps/parse.Po mv -f .deps/sym.Tpo .deps/sym.Po mv -f .deps/switch.Tpo .deps/switch.Po mv -f .deps/file.Tpo .deps/file.Po mv -f .deps/stc.Tpo .deps/stc.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -pipe -O2 -fno-strict-aliasing -L/usr/local/lib -L/usr/local/lib -o browser array.o bif.o browser.o cons.o file.o func.o lex.o num.o obj.o output.o parse.o prim.o ptr.o range.o sdo.o stc.o str.o switch.o sym.o ../../src/libsiloh5.la -lreadline -lhdf5 -lm libtool: link: c++ -pipe -O2 -fno-strict-aliasing -o .libs/browser array.o bif.o browser.o cons.o file.o func.o lex.o num.o obj.o output.o parse.o prim.o ptr.o range.o sdo.o stc.o str.o switch.o sym.o -L/usr/local/lib ../../src/.libs/libsiloh5.so -lreadline -lm -lhdf5 -Wl,-rpath -Wl,/usr/local/lib gmake[4]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools/browser' gmake[3]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools' Making all in tests gmake[3]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tests' NOTICE: Silo test cases are not compiled by default. To compile and test them NOTICE: run "make check" from the silo "tests" directory. Otherwise you can NOTICE: compile them individually with "make TESTNAME". The test names are: NOTICE: array, dir, extface, multi_test, partial_io, point, quad, simple, ucd, NOTICE: ucdsamp3, testall, obj, onehex, oneprism, onepyramid, onetet, subhex, NOTICE: TestReadMask, twohex, multispec, sami, specmix, spec, cpz1plt, NOTICE: group_test, listtypes, alltypes, wave, multi_file, polyzl, csg, NOTICE: rocket, mmadjacency, largefile, version, namescheme, efcentering, NOTICE: mk_nasf_pdb, ioperf, arbpoly2d, readstuff, mat3d_3across, merge_block, NOTICE: empty, majorder, realloc_obj_and_opts, compression, grab, mk_nasf_h5, NOTICE: but "testall" is a good one to start with. gmake[3]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tests' gmake[2]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd' gmake[1]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd' =========================================================================== =================================================== =========================================================================== =================================================== ===> Staging for silo-4.10.2_5 ===> Generating temporary packing list gmake[1]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd' gmake INSTALL_PROGRAM="/bin/sh /wrkdirs/science/silo/silo-4.10.2-bsd/config/install-sh -c -s" \ install_sh_PROGRAM="/bin/sh /wrkdirs/science/silo/silo-4.10.2-bsd/config/install-sh -c -s" INSTALL_STRIP_FLAG=-s \ `test -z 'strip' || \ echo "INSTALL_PROGRAM_ENV=STRIPPROG='strip'"` install gmake[2]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd' Making install in . gmake[3]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd' gmake[4]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd' gmake[3]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd' Making install in src gmake[3]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' gmake install-recursive gmake[4]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' Making install in score gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/score' gmake[6]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/score' gmake[6]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/include" || /bin/mkdir -p "/wrkdirs/science/silo/stage/usr/local/include" gmake[6]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/score' gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/score' Making install in pdb gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb' gmake install-am gmake[6]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb' gmake[7]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb' gmake[7]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/include" || /bin/mkdir -p "/wrkdirs/science/silo/stage/usr/local/include" gmake[7]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb' gmake[6]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb' gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb' Making install in silo gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/silo' gmake install-am gmake[6]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/silo' gmake[7]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/silo' gmake[7]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/include" || /bin/mkdir -p "/wrkdirs/science/silo/stage/usr/local/include" install -m 0644 silo.inc silo_f77.inc silo_f9x.inc pmpio.h silo_exports.h '/wrkdirs/science/silo/stage/usr/local/include' test -z "/usr/local/include" || /bin/mkdir -p "/wrkdirs/science/silo/stage/usr/local/include" install -m 0644 silo.h '/wrkdirs/science/silo/stage/usr/local/include' gmake[7]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/silo' gmake[6]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/silo' gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/silo' Making install in debug gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/debug' gmake[6]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/debug' gmake[6]: Nothing to be done for 'install-exec-am'. gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/debug' gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/debug' Making install in netcdf gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/netcdf' gmake[6]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/netcdf' gmake[6]: Nothing to be done for 'install-exec-am'. gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/netcdf' gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/netcdf' Making install in pdb_drv gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb_drv' gmake[6]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb_drv' gmake[6]: Nothing to be done for 'install-exec-am'. gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb_drv' gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/pdb_drv' Making install in hdf5_drv gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/hdf5_drv' gmake[6]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/hdf5_drv' gmake[6]: Nothing to be done for 'install-exec-am'. gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/hdf5_drv' gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/hdf5_drv' Making install in taurus gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/taurus' gmake[6]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/taurus' gmake[6]: Nothing to be done for 'install-exec-am'. gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/taurus' gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/taurus' Making install in unknown gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/unknown' gmake[6]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/unknown' gmake[6]: Nothing to be done for 'install-exec-am'. gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/unknown' gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/unknown' Making install in filters gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/filters' gmake[6]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/filters' gmake[6]: Nothing to be done for 'install-exec-am'. gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/filters' gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src/filters' Making install in . gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' gmake[6]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' test -z "/usr/local/lib" || /bin/mkdir -p "/wrkdirs/science/silo/stage/usr/local/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c -s libsiloh5.la '/wrkdirs/science/silo/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libsiloh5.so.0.0.0 /wrkdirs/science/silo/stage/usr/local/lib/libsiloh5.so.0.0.0 libtool: install: strip --strip-unneeded /wrkdirs/science/silo/stage/usr/local/lib/libsiloh5.so.0.0.0 libtool: install: (cd /wrkdirs/science/silo/stage/usr/local/lib && { ln -s -f libsiloh5.so.0.0.0 libsiloh5.so.0 || { rm -f libsiloh5.so.0 && ln -s libsiloh5.so.0.0.0 libsiloh5.so.0; }; }) libtool: install: (cd /wrkdirs/science/silo/stage/usr/local/lib && { ln -s -f libsiloh5.so.0.0.0 libsiloh5.so || { rm -f libsiloh5.so && ln -s libsiloh5.so.0.0.0 libsiloh5.so; }; }) libtool: install: /usr/bin/install -c .libs/libsiloh5.lai /wrkdirs/science/silo/stage/usr/local/lib/libsiloh5.la libtool: install: warning: remember to run `libtool --finish /usr/local/lib' gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' gmake[4]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' gmake[3]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/src' Making install in tools gmake[3]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools' Making install in . gmake[4]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools' gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools' gmake[4]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools' Making install in silock gmake[4]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools/silock' gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools/silock' test -z "/usr/local/bin" || /bin/mkdir -p "/wrkdirs/science/silo/stage/usr/local/bin" STRIPPROG='strip' /bin/sh ../../libtool --mode=install /bin/sh /wrkdirs/science/silo/silo-4.10.2-bsd/config/install-sh -c -s silock '/wrkdirs/science/silo/stage/usr/local/bin' libtool: install: warning: `../../src/libsiloh5.la' has not been installed in `/usr/local/lib' libtool: install: /bin/sh /wrkdirs/science/silo/silo-4.10.2-bsd/config/install-sh -c -s .libs/silock /wrkdirs/science/silo/stage/usr/local/bin/silock gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools/silock' gmake[4]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools/silock' Making install in browser gmake[4]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools/browser' gmake[5]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools/browser' test -z "/usr/local/bin" || /bin/mkdir -p "/wrkdirs/science/silo/stage/usr/local/bin" STRIPPROG='strip' /bin/sh ../../libtool --mode=install /bin/sh /wrkdirs/science/silo/silo-4.10.2-bsd/config/install-sh -c -s browser '/wrkdirs/science/silo/stage/usr/local/bin' libtool: install: warning: `../../src/libsiloh5.la' has not been installed in `/usr/local/lib' libtool: install: /bin/sh /wrkdirs/science/silo/silo-4.10.2-bsd/config/install-sh -c -s .libs/browser /wrkdirs/science/silo/stage/usr/local/bin/browser test -z "/usr/local/bin" || /bin/mkdir -p "/wrkdirs/science/silo/stage/usr/local/bin" install -m 555 silodiff silofile '/wrkdirs/science/silo/stage/usr/local/bin' gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools/browser' gmake[4]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools/browser' gmake[3]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tools' Making install in tests gmake[3]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tests' NOTICE: Silo test cases are not compiled by default. To compile and test them NOTICE: run "make check" from the silo "tests" directory. Otherwise you can NOTICE: compile them individually with "make TESTNAME". The test names are: NOTICE: array, dir, extface, multi_test, partial_io, point, quad, simple, ucd, NOTICE: ucdsamp3, testall, obj, onehex, oneprism, onepyramid, onetet, subhex, NOTICE: TestReadMask, twohex, multispec, sami, specmix, spec, cpz1plt, NOTICE: group_test, listtypes, alltypes, wave, multi_file, polyzl, csg, NOTICE: rocket, mmadjacency, largefile, version, namescheme, efcentering, NOTICE: mk_nasf_pdb, ioperf, arbpoly2d, readstuff, mat3d_3across, merge_block, NOTICE: empty, majorder, realloc_obj_and_opts, compression, grab, mk_nasf_h5, NOTICE: but "testall" is a good one to start with. gmake[4]: Entering directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tests' gmake[4]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/include" || /bin/mkdir -p "/wrkdirs/science/silo/stage/usr/local/include" install -m 0644 ioperf.h '/wrkdirs/science/silo/stage/usr/local/include' gmake[4]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tests' gmake[3]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd/tests' gmake[2]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd' gmake[1]: Leaving directory '/wrkdirs/science/silo/silo-4.10.2-bsd' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for silo-4.10.2_5 file sizes/checksums [17]: . done packing files [17]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for silo-4.10.2_5 build of science/silo ended at Mon Sep 18 14:55:08 PDT 2017 build time: 00:02:41