=> Building math/py-pysparse build started at Mon Sep 18 23:41:07 PDT 2017 port directory: /usr/ports/math/py-pysparse building for: DragonFly pkgbox64.dragonflybsd.org 4.9-DEVELOPMENT DragonFly v4.9.0.503.g33553-DEVELOPMENT #21: Fri Aug 4 16:51:32 PDT 2017 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: yuri@rawbw.com ident warning: no id keywords in /build/boomdata/data/.m/Release48-default/ref/../01//usr/ports/math/py-pysparse/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400908 Jail OSVERSION: 400801 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release48-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-pysparse-1.3_3 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release48-default/ref/.p/pool MASTERNAME=Release48-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/math/py-pysparse XDG_CONFIG_HOME=/wrkdirs/math/py-pysparse HOME=/wrkdirs/math/py-pysparse TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/math/py-pysparse XDG_CONFIG_HOME=/wrkdirs/math/py-pysparse HOME=/wrkdirs/math/py-pysparse TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly4 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=4.8 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pysparse" EXAMPLESDIR="share/examples/pysparse" DATADIR="share/pysparse" WWWDIR="www/pysparse" ETCDIR="etc/pysparse" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pysparse DOCSDIR=/usr/local/share/doc/pysparse EXAMPLESDIR=/usr/local/share/examples/pysparse WWWDIR=/usr/local/www/pysparse ETCDIR=/usr/local/etc/pysparse --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===> py27-pysparse-1.3_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz Installing pkg-1.10.1... Extracting pkg-1.10.1: .......... done ===> py27-pysparse-1.3_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-pysparse-1.3_3 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-pysparse-1.3_3 for building =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-pysparse-1.3_3 for building => SHA256 Checksum OK for PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-pysparse-1.3_3 for building ===> Extracting for py27-pysparse-1.3_3 => SHA256 Checksum OK for PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for py27-pysparse-1.3_3 ===> Applying ports patches for py27-pysparse-1.3_3 =========================================================================== =================================================== ===> py27-pysparse-1.3_3 depends on package: py27-numpy>=1.2,1 - not found ===> Installing existing package /packages/All/py27-numpy-1.13.1_2,1.txz Installing py27-numpy-1.13.1_2,1... `-- Installing blas-3.5.0_3... | `-- Installing gcc5-5.4.0_3... | | `-- Installing binutils-2.28,1... | | `-- Installing gettext-runtime-0.19.8.1_1... | | | `-- Installing indexinfo-0.2.6... | | | `-- Extracting indexinfo-0.2.6: .... done | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | | `-- Extracting binutils-2.28,1: .......... done | | `-- Installing gmp-6.1.2... | | `-- Extracting gmp-6.1.2: .......... done | | `-- Installing mpc-1.0.3... | | `-- Installing mpfr-3.1.5_1... | | `-- Extracting mpfr-3.1.5_1: .......... done | | `-- Extracting mpc-1.0.3: ...... done | `-- Extracting gcc5-5.4.0_3: .......... done `-- Extracting blas-3.5.0_3: ....... done `-- Installing cblas-1.0_7... `-- Extracting cblas-1.0_7: ......... done `-- Installing lapack-3.5.0_3... `-- Extracting lapack-3.5.0_3: .......... done `-- Installing py27-setuptools-36.2.2... | `-- Installing python27-2.7.13_7... | | `-- Installing expat-2.2.1... | | `-- Extracting expat-2.2.1: .......... done | | `-- Installing libffi-3.2.1... | | `-- Extracting libffi-3.2.1: .......... done | | `-- Installing libressl-2.5.5... | | `-- Extracting libressl-2.5.5: .......... done | | `-- Installing ncurses-6.0_3... | | `-- Extracting ncurses-6.0_3: .......... done | | `-- Installing readline-7.0.3... | | `-- Extracting readline-7.0.3: .......... done | `-- Extracting python27-2.7.13_7: .......... done `-- Extracting py27-setuptools-36.2.2: .......... done `-- Installing suitesparse-4.0.2_7... | `-- Installing openblas-0.2.20_1,1... | `-- Extracting openblas-0.2.20_1,1: ......... done `-- Extracting suitesparse-4.0.2_7: .......... done Extracting py27-numpy-1.13.1_2,1: .......... done Message from gcc5-5.4.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_7: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from ncurses-6.0_3: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.13_7: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> py27-pysparse-1.3_3 depends on package: py27-numpy>=1.2,1 - found ===> Returning to build of py27-pysparse-1.3_3 ===> py27-pysparse-1.3_3 depends on executable: gfortran5 - found ===> py27-pysparse-1.3_3 depends on package: py27-setuptools>0 - found ===> py27-pysparse-1.3_3 depends on file: /usr/local/bin/python2.7 - found ===> py27-pysparse-1.3_3 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== ===> py27-pysparse-1.3_3 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> py27-pysparse-1.3_3 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> py27-pysparse-1.3_3 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> py27-pysparse-1.3_3 depends on shared library: libcblas.so - found (/usr/local/lib/libcblas.so) =========================================================================== =================================================== ===> Configuring for py27-pysparse-1.3_3 blas_opt_info: blas_mkl_info: libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../../'] NOT AVAILABLE blis_info: libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS customize GnuFCompiler Found executable /usr/local/bin/gfortran5 gnu: no Fortran 90 compiler found Could not locate executable cc -shared Found executable /usr/local/bin/ld Found executable /usr/local/bin/ar Found executable /usr/local/bin/ranlib gnu: no Fortran 90 compiler found customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lblas -lcblas -o _configtest _configtest.o:_configtest.c:function main: error: undefined reference to 'ATL_buildinfo' collect2: error: ld returned 1 exit status _configtest.o:_configtest.c:function main: error: undefined reference to 'ATL_buildinfo' collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lblas -lcblas -o _configtest _configtest.o:_configtest.c:function main: error: undefined reference to 'ATL_buildinfo' collect2: error: ld returned 1 exit status _configtest.o:_configtest.c:function main: error: undefined reference to 'ATL_buildinfo' collect2: error: ld returned 1 exit status Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../../'] Library tatlas was not found. Ignoring FOUND: libraries = ['blas', 'cblas'] library_dirs = ['/usr/local/lib'] language = c define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')] include_dirs = ['/usr/local/include'] FOUND: libraries = ['blas', 'cblas'] library_dirs = ['/usr/local/lib'] language = c define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')] include_dirs = ['/usr/local/include'] Sparse:: Using BLAS info: {'libraries': ['blas', 'cblas'], 'library_dirs': ['/usr/local/lib'], 'define_macros': [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')], 'language': 'c', 'include_dirs': ['/usr/local/include']} Using dflt_lib_dirs = [] Using dflt_libs = [] Eigen:: Using BLAS info: {'libraries': ['blas', 'cblas'], 'library_dirs': ['/usr/local/lib'], 'define_macros': [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')], 'language': 'c', 'include_dirs': ['/usr/local/include']} lapack_opt_info: lapack_mkl_info: libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../../'] NOT AVAILABLE openblas_lapack_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpbvABKz/tmp creating /tmp/tmpbvABKz/tmp/tmpbvABKz compile options: '-MMD -MF /tmp/tmpbvABKz/file.c.d -c' cc: /tmp/tmpbvABKz/file.c C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpYahZPt/tmp creating /tmp/tmpYahZPt/tmp/tmpYahZPt compile options: '-c' cc: /tmp/tmpYahZPt/source.c /tmp/tmpYahZPt/source.c: In function 'main': /tmp/tmpYahZPt/source.c:4:13: warning: implicit declaration of function 'zungqr_' [-Wimplicit-function-declaration] zungqr_(); ^ cc /tmp/tmpYahZPt/tmp/tmpYahZPt/source.o -L/usr/local/lib -lopenblas -o /tmp/tmpYahZPt/a.out FOUND: libraries = ['openblas', 'openblas'] library_dirs = ['/usr/local/lib'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'openblas'] library_dirs = ['/usr/local/lib'] language = c define_macros = [('HAVE_CBLAS', None)] /usr/local/lib/python2.7/site-packages/setuptools/dist.py:341: UserWarning: Normalizing '1.3-dev' to '1.3.dev0' normalized_version, Eigen:: Using LAPACK info: {'libraries': ['openblas', 'openblas'], 'library_dirs': ['/usr/local/lib'], 'define_macros': [('HAVE_CBLAS', None)], 'language': 'c'} Direct:: Using BLAS info: {'libraries': ['blas', 'cblas'], 'library_dirs': ['/usr/local/lib'], 'define_macros': [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')], 'language': 'c', 'include_dirs': ['/usr/local/include']} Using default UMFPACK and AMD If you do not like this, edit the [UMFPACK] and [AMD] sections of site.cfg Using default SuperLU. If you do not like this, edit the [SuperLU] section of site.cfg running config =========================================================================== =================================================== ===> Building for py27-pysparse-1.3_3 blas_opt_info: blas_mkl_info: libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../../'] NOT AVAILABLE blis_info: libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS customize GnuFCompiler Found executable /usr/local/bin/gfortran5 gnu: no Fortran 90 compiler found Could not locate executable cc -shared Found executable /usr/local/bin/ld Found executable /usr/local/bin/ar Found executable /usr/local/bin/ranlib gnu: no Fortran 90 compiler found customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lblas -lcblas -o _configtest _configtest.o:_configtest.c:function main: error: undefined reference to 'ATL_buildinfo' collect2: error: ld returned 1 exit status _configtest.o:_configtest.c:function main: error: undefined reference to 'ATL_buildinfo' collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lblas -lcblas -o _configtest _configtest.o:_configtest.c:function main: error: undefined reference to 'ATL_buildinfo' collect2: error: ld returned 1 exit status _configtest.o:_configtest.c:function main: error: undefined reference to 'ATL_buildinfo' collect2: error: ld returned 1 exit status Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../../'] Library tatlas was not found. Ignoring FOUND: libraries = ['blas', 'cblas'] library_dirs = ['/usr/local/lib'] language = c define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')] include_dirs = ['/usr/local/include'] FOUND: libraries = ['blas', 'cblas'] library_dirs = ['/usr/local/lib'] language = c define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')] include_dirs = ['/usr/local/include'] Sparse:: Using BLAS info: {'libraries': ['blas', 'cblas'], 'library_dirs': ['/usr/local/lib'], 'define_macros': [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')], 'language': 'c', 'include_dirs': ['/usr/local/include']} Using dflt_lib_dirs = [] Using dflt_libs = [] Eigen:: Using BLAS info: {'libraries': ['blas', 'cblas'], 'library_dirs': ['/usr/local/lib'], 'define_macros': [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')], 'language': 'c', 'include_dirs': ['/usr/local/include']} lapack_opt_info: lapack_mkl_info: libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../../'] NOT AVAILABLE openblas_lapack_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpVH0lCk/tmp creating /tmp/tmpVH0lCk/tmp/tmpVH0lCk compile options: '-MMD -MF /tmp/tmpVH0lCk/file.c.d -c' cc: /tmp/tmpVH0lCk/file.c C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpEefFzM/tmp creating /tmp/tmpEefFzM/tmp/tmpEefFzM compile options: '-c' cc: /tmp/tmpEefFzM/source.c /tmp/tmpEefFzM/source.c: In function 'main': /tmp/tmpEefFzM/source.c:4:13: warning: implicit declaration of function 'zungqr_' [-Wimplicit-function-declaration] zungqr_(); ^ cc /tmp/tmpEefFzM/tmp/tmpEefFzM/source.o -L/usr/local/lib -lopenblas -o /tmp/tmpEefFzM/a.out FOUND: libraries = ['openblas', 'openblas'] library_dirs = ['/usr/local/lib'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'openblas'] library_dirs = ['/usr/local/lib'] language = c define_macros = [('HAVE_CBLAS', None)] /usr/local/lib/python2.7/site-packages/setuptools/dist.py:341: UserWarning: Normalizing '1.3-dev' to '1.3.dev0' normalized_version, Eigen:: Using LAPACK info: {'libraries': ['openblas', 'openblas'], 'library_dirs': ['/usr/local/lib'], 'define_macros': [('HAVE_CBLAS', None)], 'language': 'c'} Direct:: Using BLAS info: {'libraries': ['blas', 'cblas'], 'library_dirs': ['/usr/local/lib'], 'define_macros': [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')], 'language': 'c', 'include_dirs': ['/usr/local/include']} Using default UMFPACK and AMD If you do not like this, edit the [UMFPACK] and [AMD] sections of site.cfg Using default SuperLU. If you do not like this, edit the [SuperLU] section of site.cfg running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building py_modules sources creating build creating build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7 creating build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse creating build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse creating build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen creating build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct creating build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers creating build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon building extension "pysparse.sparse.spmatrix" sources building extension "pysparse.eigen.jdsym" sources building extension "pysparse.direct.umfpack" sources building extension "pysparse.direct.superlu" sources building extension "pysparse.itsolvers.krylov" sources building extension "pysparse.precon.precon" sources building data_files sources build_src: building npy-pkg config files running build_py creating build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7 creating build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse copying pysparse/__init__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse copying pysparse/setup.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse copying pysparse/version.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse copying build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/__config__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse creating build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse copying pysparse/sparse/sparseMatrix.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse copying pysparse/sparse/setup.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse copying pysparse/sparse/__init__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse copying pysparse/sparse/pysparseMatrix.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse copying build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse/__config__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse creating build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen copying pysparse/eigen/__init__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen copying pysparse/eigen/setup.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen copying build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen/__config__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen creating build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct copying pysparse/direct/pysparseUmfpack.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct copying pysparse/direct/__init__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct copying pysparse/direct/directSolver.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct copying pysparse/direct/pysparseSuperLU.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct copying pysparse/direct/setup.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct copying build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/__config__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct creating build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers copying pysparse/itsolvers/itsolvers_util.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers copying pysparse/itsolvers/__init__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers copying pysparse/itsolvers/setup.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers copying build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/__config__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers creating build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon copying pysparse/precon/setup.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon copying pysparse/precon/__init__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon copying build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon/__config__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon creating build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/tools copying pysparse/tools/poisson.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/tools copying pysparse/tools/__init__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/tools copying pysparse/tools/sptime.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/tools copying pysparse/tools/spmatrix_util.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/tools copying pysparse/tools/sparray.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/tools copying pysparse/tools/poisson_vec.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/tools creating build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/misc copying pysparse/misc/__init__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/misc copying pysparse/misc/system.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/misc running build_ext customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpTZJqOk/tmp creating /tmp/tmpTZJqOk/tmp/tmpTZJqOk compile options: '-MMD -MF /tmp/tmpTZJqOk/file.c.d -c' cc: /tmp/tmpTZJqOk/file.c customize UnixCCompiler using build_ext building 'pysparse.sparse.spmatrix' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7 creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse/src compile options: '-DLENFUNC_OK=1 -DHAVE_CBLAS -DATLAS_INFO="\"None\"" -Ipysparse/sparse/src -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/sparse/src/spmatrixmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/sparse/src/spmatrixmodule.c:9: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse/src/spmatrixmodule.o -L/usr/local/lib -L/usr/local/lib -lblas -lcblas -lpython2.7 -o build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse/spmatrix.so building 'pysparse.eigen.jdsym' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen/src compile options: '-DHAVE_CBLAS -DATLAS_INFO="\"None\"" -DHAVE_CBLAS -Ipysparse/eigen/src -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/eigen/src/jdsymmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/eigen/src/jdsymmodule.c:16: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen/src/jdsymmodule.o -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -lblas -lcblas -lopenblas -lopenblas -lpython2.7 -o build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen/jdsym.so building 'pysparse.direct.umfpack' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/src creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/amd creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/amd/src compile options: '-DNBLAS=1 -DDINT=1 -DHAVE_CBLAS -DATLAS_INFO="\"None\"" -Ipysparse/direct/src -Ipysparse/direct/umfpack/include -Ipysparse/direct/amd/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/direct/umfpack/src/umfpack_symbolic.c cc: pysparse/direct/umfpack/src/umf_create_element.c cc: pysparse/direct/umfpack/src/umfpack_wsolve.c cc: pysparse/direct/umfpack/src/umf_symbolic_usage.c cc: pysparse/direct/umfpack/src/umf_analyze.c cc: pysparse/direct/umfpack/src/umfpack_save_symbolic.c cc: pysparse/direct/umfpack/src/umfpack_scale.c cc: pysparse/direct/umfpack/src/umf_is_permutation.c cc: pysparse/direct/umfpack/src/umf_dump.c cc: pysparse/direct/umfpack/src/umf_triplet_map_x.c cc: pysparse/direct/umfpack/src/umf_mem_alloc_element.c cc: pysparse/direct/umfpack/src/umf_valid_numeric.c cc: pysparse/direct/umfpack/src/umfpack_get_symbolic.c cc: pysparse/direct/amd/src/amd_control.c cc: pysparse/direct/amd/src/amd_post_tree.c cc: pysparse/direct/umfpack/src/umf_2by2.c cc: pysparse/direct/umfpack/src/umf_apply_order.c cc: pysparse/direct/amd/src/amd_valid.c cc: pysparse/direct/umfpack/src/umf_kernel_wrapup.c cc: pysparse/direct/umfpack/src/umf_utsolve.c cc: pysparse/direct/umfpack/src/umfpack_report_numeric.c cc: pysparse/direct/umfpack/src/umf_lhsolve.c cc: pysparse/direct/umfpack/src/umfpack_tictoc.c cc: pysparse/direct/umfpack/src/umfpack_report_vector.c cc: pysparse/direct/umfpack/src/umf_kernel_init.c cc: pysparse/direct/umfpack/src/umf_colamd.c cc: pysparse/direct/umfpack/src/umfpack_col_to_triplet.c cc: pysparse/direct/umfpack/src/umf_assemble_fixq.c cc: pysparse/direct/umfpack/src/umfpack_free_symbolic.c cc: pysparse/direct/umfpack/src/umfpack_get_numeric.c cc: pysparse/direct/umfpack/src/umfpack_load_symbolic.c cc: pysparse/direct/umfpack/src/umf_row_search.c cc: pysparse/direct/umfpack/src/umf_report_perm.c cc: pysparse/direct/umfpack/src/umfpack_timer.c cc: pysparse/direct/umfpack/src/umfpack_triplet_to_col.c cc: pysparse/direct/umfpack/src/umfpack_report_matrix.c cc: pysparse/direct/amd/src/amd_defaults.c cc: pysparse/direct/umfpack/src/umf_ltsolve.c cc: pysparse/direct/umfpack/src/umf_get_memory.c cc: pysparse/direct/umfpack/src/umf_realloc.c cc: pysparse/direct/umfpack/src/umfpack_get_lunz.c cc: pysparse/direct/umfpack/src/umf_valid_symbolic.c cc: pysparse/direct/umfpack/src/umfpack_numeric.c cc: pysparse/direct/umfpack/src/umfpack_qsymbolic.c cc: pysparse/direct/umfpack/src/umfpack_report_status.c cc: pysparse/direct/umfpack/src/umf_triplet_nomap_x.c cc: pysparse/direct/umfpack/src/umf_fsize.c cc: pysparse/direct/umfpack/src/umfpack_report_perm.c cc: pysparse/direct/umfpack/src/umf_solve.c cc: pysparse/direct/umfpack/src/umf_store_lu.c cc: pysparse/direct/umfpack/src/umfpack_report_control.c cc: pysparse/direct/umfpack/src/umf_kernel.c cc: pysparse/direct/amd/src/amd_postorder.c cc: pysparse/direct/umfpack/src/umfpack_defaults.c cc: pysparse/direct/umfpack/src/umfpack_transpose.c cc: pysparse/direct/umfpack/src/umfpack_report_info.c cc: pysparse/direct/umfpack/src/umf_local_search.c cc: pysparse/direct/umfpack/src/umf_triplet_map_nox.c cc: pysparse/direct/src/umfpackmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/direct/src/umfpackmodule.c:64: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc: pysparse/direct/umfpack/src/umfpack_report_symbolic.c cc: pysparse/direct/umfpack/src/umf_scale_column.c cc: pysparse/direct/umfpack/src/umf_uhsolve.c cc: pysparse/direct/umfpack/src/umf_assemble.c cc: pysparse/direct/umfpack/src/umf_free.c cc: pysparse/direct/amd/src/amd_1.c cc: pysparse/direct/umfpack/src/umf_usolve.c cc: pysparse/direct/umfpack/src/umf_lsolve.c cc: pysparse/direct/umfpack/src/umfpack_report_triplet.c cc: pysparse/direct/amd/src/amd_aat.c cc: pysparse/direct/umfpack/src/umf_garbage_collection.c cc: pysparse/direct/umfpack/src/umf_transpose.c cc: pysparse/direct/umfpack/src/umf_malloc.c cc: pysparse/direct/umfpack/src/umf_extend_front.c cc: pysparse/direct/umfpack/src/umf_start_front.c cc: pysparse/direct/umfpack/src/umf_singletons.c cc: pysparse/direct/umfpack/src/umf_report_vector.c cc: pysparse/direct/umfpack/src/umfpack_free_numeric.c cc: pysparse/direct/umfpack/src/umf_build_tuples.c cc: pysparse/direct/umfpack/src/umf_scale.c cc: pysparse/direct/amd/src/amd_info.c cc: pysparse/direct/umfpack/src/umf_triplet_nomap_nox.c cc: pysparse/direct/umfpack/src/umf_init_front.c cc: pysparse/direct/amd/src/amd_dump.c cc: pysparse/direct/umfpack/src/umfpack_load_numeric.c cc: pysparse/direct/umfpack/src/umf_mem_init_memoryspace.c cc: pysparse/direct/umfpack/src/umfpack_save_numeric.c cc: pysparse/direct/umfpack/src/umfpack_solve.c cc: pysparse/direct/umfpack/src/umf_tuple_lengths.c cc: pysparse/direct/umfpack/src/umf_mem_alloc_tail_block.c cc: pysparse/direct/umfpack/src/umf_blas3_update.c cc: pysparse/direct/amd/src/amd_order.c cc: pysparse/direct/umfpack/src/umf_mem_free_tail_block.c cc: pysparse/direct/umfpack/src/umf_grow_front.c cc: pysparse/direct/umfpack/src/umf_mem_alloc_head_block.c cc: pysparse/direct/amd/src/amd_2.c cc: pysparse/direct/umfpack/src/umf_set_stats.c cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_set_stats.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_numeric.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_uhsolve.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_scale.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_get_lunz.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_local_search.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_matrix.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_timer.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_lhsolve.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_get_memory.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_fsize.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_free_tail_block.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_assemble.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_numeric.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_save_symbolic.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_load_numeric.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_kernel_wrapup.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_transpose.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_start_front.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_triplet.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_scale_column.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_vector.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_2by2.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_usolve.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_malloc.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_apply_order.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_save_numeric.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_utsolve.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_info.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_symbolic.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_extend_front.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_perm.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_free_numeric.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_free.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_status.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_triplet_nomap_x.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_triplet_to_col.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_free_symbolic.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_dump.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_get_numeric.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_row_search.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_analyze.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_kernel_init.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_colamd.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_realloc.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_build_tuples.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_report_perm.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_symbolic.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_col_to_triplet.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_control.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_defaults.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_is_permutation.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_create_element.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_scale.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_valid_symbolic.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_grow_front.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_load_symbolic.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_transpose.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_triplet_map_x.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_alloc_element.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_qsymbolic.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_valid_numeric.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_store_lu.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_symbolic_usage.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_tictoc.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_singletons.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_kernel.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_solve.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_lsolve.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_wsolve.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_ltsolve.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_alloc_head_block.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_assemble_fixq.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_solve.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_blas3_update.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_init_memoryspace.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_alloc_tail_block.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_report_vector.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_tuple_lengths.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_get_symbolic.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_garbage_collection.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_triplet_nomap_nox.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_triplet_map_nox.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack/src/umf_init_front.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/src/umfpackmodule.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/amd/src/amd_info.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/amd/src/amd_1.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/amd/src/amd_postorder.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/amd/src/amd_2.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/amd/src/amd_aat.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/amd/src/amd_control.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/amd/src/amd_defaults.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/amd/src/amd_valid.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/amd/src/amd_dump.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/amd/src/amd_post_tree.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/amd/src/amd_order.o -L/usr/local/lib -L/usr/local/lib -lblas -lcblas -lpython2.7 -o build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack.so building 'pysparse.direct.superlu' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src compile options: '-DUSE_VENDOR_BLAS=1 -DHAVE_CBLAS -DATLAS_INFO="\"None\"" -Ipysparse/direct/src -Ipysparse/direct/superlu/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/direct/superlu/src/dpruneL.c cc: pysparse/direct/superlu/src/scomplex.c cc: pysparse/direct/superlu/src/memory.c cc: pysparse/direct/superlu/src/dpivotL.c cc: pysparse/direct/superlu/src/dlaqgs.c cc: pysparse/direct/superlu/src/dgstrf.c cc: pysparse/direct/superlu/src/dutil.c pysparse/direct/superlu/src/dutil.c:470:1: warning: return type defaults to 'int' [-Wimplicit-int] print_double_vec(char *what, int n, double *vec) ^ cc: pysparse/direct/superlu/src/dcopy_to_ucol.c cc: pysparse/direct/superlu/src/dgssv.c cc: pysparse/direct/superlu/src/relax_snode.c cc: pysparse/direct/superlu/src/colamd.c cc: pysparse/direct/superlu/src/dlamch.c pysparse/direct/superlu/src/dlamch.c: In function 'dlamch_': pysparse/direct/superlu/src/dlamch.c:100:9: warning: implicit declaration of function 'lsame_' [-Wimplicit-function-declaration] if (lsame_(cmach, "E")) { ^ cc: pysparse/direct/superlu/src/dgsrfs.c cc: pysparse/direct/superlu/src/dzsum1.c cc: pysparse/direct/superlu/src/dsnode_dfs.c cc: pysparse/direct/superlu/src/dgscon.c cc: pysparse/direct/superlu/src/get_perm_c.c cc: pysparse/direct/superlu/src/dcomplex.c cc: pysparse/direct/superlu/src/dpivotgrowth.c cc: pysparse/direct/superlu/src/dsp_blas3.c cc: pysparse/direct/superlu/src/dreadhb.c cc: pysparse/direct/superlu/src/dsnode_bmod.c pysparse/direct/superlu/src/dsnode_bmod.c: In function 'dsnode_bmod': pysparse/direct/superlu/src/dsnode_bmod.c:97:2: warning: implicit declaration of function 'dtrsv_' [-Wimplicit-function-declaration] dtrsv_( "L", "N", "U", &nsupc, &lusup[luptr], &nsupr, ^ pysparse/direct/superlu/src/dsnode_bmod.c:99:2: warning: implicit declaration of function 'dgemv_' [-Wimplicit-function-declaration] dgemv_( "N", &nrow, &nsupc, &alpha, &lusup[luptr+nsupc], &nsupr, ^ cc: pysparse/direct/superlu/src/dcolumn_dfs.c cc: pysparse/direct/superlu/src/sp_ienv.c pysparse/direct/superlu/src/sp_ienv.c: In function 'sp_ienv': pysparse/direct/superlu/src/sp_ienv.c:57:5: warning: implicit declaration of function 'xerbla_' [-Wimplicit-function-declaration] xerbla_("sp_ienv", &i); ^ cc: pysparse/direct/superlu/src/dpanel_bmod.c pysparse/direct/superlu/src/dpanel_bmod.c: In function 'dpanel_bmod': pysparse/direct/superlu/src/dpanel_bmod.c:217:7: warning: implicit declaration of function 'dtrsv_' [-Wimplicit-function-declaration] dtrsv_( "L", "N", "U", &segsze, &lusup[luptr], ^ pysparse/direct/superlu/src/dpanel_bmod.c:264:7: warning: implicit declaration of function 'dgemv_' [-Wimplicit-function-declaration] dgemv_("N", &block_nrow, &segsze, &alpha, &lusup[luptr1], ^ cc: pysparse/direct/superlu/src/dlangs.c cc: pysparse/direct/superlu/src/icmax1.c cc: pysparse/direct/superlu/src/superlu_timer.c cc: pysparse/direct/superlu/src/mmd.c cc: pysparse/direct/superlu/src/dgssvx.c cc: pysparse/direct/superlu/src/izmax1.c pysparse/direct/superlu/src/izmax1.c: In function 'izmax1_': pysparse/direct/superlu/src/izmax1.c:70:29: warning: implicit declaration of function 'abs' [-Wimplicit-function-declaration] smax = (d__1 = CX(1).r, abs(d__1)); ^ cc: pysparse/direct/src/superlumodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/direct/src/superlumodule.c:5: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from pysparse/direct/src/superlumodule.c:9:0: pysparse/direct/superlu/include/util.h:41:0: warning: "FALSE" redefined #define FALSE 0 ^ In file included from pysparse/direct/src/superlumodule.c:6:0: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/noprefix.h:151:0: note: this is the location of the previous definition #define FALSE NPY_FALSE ^ In file included from pysparse/direct/src/superlumodule.c:9:0: pysparse/direct/superlu/include/util.h:42:0: warning: "TRUE" redefined #define TRUE 1 ^ In file included from pysparse/direct/src/superlumodule.c:6:0: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/noprefix.h:147:0: note: this is the location of the previous definition #define TRUE NPY_TRUE ^ cc: pysparse/direct/superlu/src/util.c cc: pysparse/direct/superlu/src/dpanel_dfs.c cc: pysparse/direct/superlu/src/dgstrs.c pysparse/direct/superlu/src/dgstrs.c: In function 'dgstrs': pysparse/direct/superlu/src/dgstrs.c:183:3: warning: implicit declaration of function 'dtrsm_' [-Wimplicit-function-declaration] dtrsm_("L", "L", "N", "U", &nsupc, &nrhs, &alpha, ^ pysparse/direct/superlu/src/dgstrs.c:186:3: warning: implicit declaration of function 'dgemm_' [-Wimplicit-function-declaration] dgemm_( "N", "N", &nrow, &nrhs, &nsupc, &alpha, ^ cc: pysparse/direct/superlu/src/dsp_blas2.c pysparse/direct/superlu/src/dsp_blas2.c: In function 'sp_dtrsv': pysparse/direct/superlu/src/dsp_blas2.c:154:7: warning: implicit declaration of function 'dtrsv_' [-Wimplicit-function-declaration] dtrsv_("L", "N", "U", &nsupc, &Lval[luptr], &nsupr, ^ pysparse/direct/superlu/src/dsp_blas2.c:157:7: warning: implicit declaration of function 'dgemv_' [-Wimplicit-function-declaration] dgemv_("N", &nrow, &nsupc, &alpha, &Lval[luptr+nsupc], ^ cc: pysparse/direct/superlu/src/dgsequ.c cc: pysparse/direct/superlu/src/sp_preorder.c pysparse/direct/superlu/src/sp_preorder.c:144:1: warning: return type defaults to 'int' [-Wimplicit-int] check_perm(char *what, int n, int *perm) ^ cc: pysparse/direct/superlu/src/lsame.c cc: pysparse/direct/superlu/src/dmemory.c cc: pysparse/direct/superlu/src/dlacon.c cc: pysparse/direct/superlu/src/sp_coletree.c cc: pysparse/direct/superlu/src/dcolumn_bmod.c pysparse/direct/superlu/src/dcolumn_bmod.c: In function 'dcolumn_bmod': pysparse/direct/superlu/src/dcolumn_bmod.c:217:3: warning: implicit declaration of function 'dtrsv_' [-Wimplicit-function-declaration] dtrsv_( "L", "N", "U", &segsze, &lusup[luptr], ^ pysparse/direct/superlu/src/dcolumn_bmod.c:228:3: warning: implicit declaration of function 'dgemv_' [-Wimplicit-function-declaration] dgemv_( "N", &nrow, &segsze, &alpha, &lusup[luptr], ^ cc: pysparse/direct/superlu/src/xerbla.c pysparse/direct/superlu/src/xerbla.c: In function 'xerbla_': pysparse/direct/superlu/src/xerbla.c:33:5: warning: implicit declaration of function 'printf' [-Wimplicit-function-declaration] printf("** On entry to %6s, parameter number %2d had an illegal value\n", ^ pysparse/direct/superlu/src/xerbla.c:33:5: warning: incompatible implicit declaration of built-in function 'printf' pysparse/direct/superlu/src/xerbla.c:33:5: note: include '' or provide a declaration of 'printf' cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dgscon.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dgsrfs.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dgssvx.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dgsequ.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/xerbla.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dgstrf.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dpivotgrowth.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/sp_coletree.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dpivotL.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dreadhb.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dlamch.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/sp_preorder.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/superlu_timer.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dlangs.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dcolumn_bmod.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/izmax1.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dutil.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dsnode_dfs.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dgstrs.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/util.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/sp_ienv.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dgssv.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dcopy_to_ucol.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dsp_blas2.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dcolumn_dfs.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dlaqgs.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/scomplex.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dmemory.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/lsame.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dsp_blas3.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/colamd.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dlacon.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dpruneL.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dpanel_bmod.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/get_perm_c.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dzsum1.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dsnode_bmod.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/relax_snode.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/mmd.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/memory.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/icmax1.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dcomplex.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu/src/dpanel_dfs.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/src/superlumodule.o -L/usr/local/lib -L/usr/local/lib -lblas -lcblas -lpython2.7 -o build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu.so building 'pysparse.itsolvers.krylov' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/src compile options: '-DHAVE_CBLAS -DATLAS_INFO="\"None\"" -Ipysparse/itsolvers/src -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/itsolvers/src/pcg.c cc: pysparse/itsolvers/src/qmrs.c cc: pysparse/itsolvers/src/gmres.c cc: pysparse/itsolvers/src/cgs.c cc: pysparse/itsolvers/src/itsolversmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/itsolvers/src/itsolversmodule.c:9: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc: pysparse/itsolvers/src/bicgstab.c cc: pysparse/itsolvers/src/minres.c cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/src/itsolversmodule.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/src/bicgstab.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/src/cgs.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/src/gmres.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/src/minres.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/src/pcg.o build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/src/qmrs.o -L/usr/local/lib -L/usr/local/lib -lblas -lcblas -lpython2.7 -o build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/krylov.so building 'pysparse.precon.precon' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon creating build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon/src compile options: '-DHAVE_CBLAS -DATLAS_INFO="\"None\"" -Ipysparse/precon/src -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/precon/src/preconmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/precon/src/preconmodule.c:4: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon/src/preconmodule.o -L/usr/local/lib -L/usr/local/lib -lblas -lcblas -lpython2.7 -o build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon/precon.so =========================================================================== =================================================== ===> py27-pysparse-1.3_3 depends on package: py27-numpy>=1.2,1 - found ===> py27-pysparse-1.3_3 depends on executable: gfortran5 - found ===> py27-pysparse-1.3_3 depends on package: py27-setuptools>0 - found ===> py27-pysparse-1.3_3 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =================================================== ===> Staging for py27-pysparse-1.3_3 ===> Generating temporary packing list blas_opt_info: blas_mkl_info: libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../../'] NOT AVAILABLE blis_info: libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS customize GnuFCompiler Found executable /usr/local/bin/gfortran5 gnu: no Fortran 90 compiler found Could not locate executable cc -shared Found executable /usr/local/bin/ld Found executable /usr/local/bin/ar Found executable /usr/local/bin/ranlib gnu: no Fortran 90 compiler found customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lblas -lcblas -o _configtest _configtest.o:_configtest.c:function main: error: undefined reference to 'ATL_buildinfo' collect2: error: ld returned 1 exit status _configtest.o:_configtest.c:function main: error: undefined reference to 'ATL_buildinfo' collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lblas -lcblas -o _configtest _configtest.o:_configtest.c:function main: error: undefined reference to 'ATL_buildinfo' collect2: error: ld returned 1 exit status _configtest.o:_configtest.c:function main: error: undefined reference to 'ATL_buildinfo' collect2: error: ld returned 1 exit status Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../../'] Library tatlas was not found. Ignoring FOUND: libraries = ['blas', 'cblas'] library_dirs = ['/usr/local/lib'] language = c define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')] include_dirs = ['/usr/local/include'] FOUND: libraries = ['blas', 'cblas'] library_dirs = ['/usr/local/lib'] language = c define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')] include_dirs = ['/usr/local/include'] Sparse:: Using BLAS info: {'libraries': ['blas', 'cblas'], 'library_dirs': ['/usr/local/lib'], 'define_macros': [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')], 'language': 'c', 'include_dirs': ['/usr/local/include']} Using dflt_lib_dirs = [] Using dflt_libs = [] Eigen:: Using BLAS info: {'libraries': ['blas', 'cblas'], 'library_dirs': ['/usr/local/lib'], 'define_macros': [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')], 'language': 'c', 'include_dirs': ['/usr/local/include']} lapack_opt_info: lapack_mkl_info: libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../../'] NOT AVAILABLE openblas_lapack_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpnT0wRS/tmp creating /tmp/tmpnT0wRS/tmp/tmpnT0wRS compile options: '-MMD -MF /tmp/tmpnT0wRS/file.c.d -c' cc: /tmp/tmpnT0wRS/file.c C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpTItfsa/tmp creating /tmp/tmpTItfsa/tmp/tmpTItfsa compile options: '-c' cc: /tmp/tmpTItfsa/source.c /tmp/tmpTItfsa/source.c: In function 'main': /tmp/tmpTItfsa/source.c:4:13: warning: implicit declaration of function 'zungqr_' [-Wimplicit-function-declaration] zungqr_(); ^ cc /tmp/tmpTItfsa/tmp/tmpTItfsa/source.o -L/usr/local/lib -lopenblas -o /tmp/tmpTItfsa/a.out FOUND: libraries = ['openblas', 'openblas'] library_dirs = ['/usr/local/lib'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'openblas'] library_dirs = ['/usr/local/lib'] language = c define_macros = [('HAVE_CBLAS', None)] /usr/local/lib/python2.7/site-packages/setuptools/dist.py:341: UserWarning: Normalizing '1.3-dev' to '1.3.dev0' normalized_version, Eigen:: Using LAPACK info: {'libraries': ['openblas', 'openblas'], 'library_dirs': ['/usr/local/lib'], 'define_macros': [('HAVE_CBLAS', None)], 'language': 'c'} Direct:: Using BLAS info: {'libraries': ['blas', 'cblas'], 'library_dirs': ['/usr/local/lib'], 'define_macros': [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"None\\""')], 'language': 'c', 'include_dirs': ['/usr/local/include']} Using default UMFPACK and AMD If you do not like this, edit the [UMFPACK] and [AMD] sections of site.cfg Using default SuperLU. If you do not like this, edit the [SuperLU] section of site.cfg running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building py_modules sources building extension "pysparse.sparse.spmatrix" sources building extension "pysparse.eigen.jdsym" sources building extension "pysparse.direct.umfpack" sources building extension "pysparse.direct.superlu" sources building extension "pysparse.itsolvers.krylov" sources building extension "pysparse.precon.precon" sources building data_files sources build_src: building npy-pkg config files running build_py copying pysparse/version.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse copying build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/__config__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse copying build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse/__config__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse copying build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen/__config__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen copying build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/__config__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct copying build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/__config__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers copying build/src.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon/__config__.py -> build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon running build_ext customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpXgyyAq/tmp creating /tmp/tmpXgyyAq/tmp/tmpXgyyAq compile options: '-MMD -MF /tmp/tmpXgyyAq/file.c.d -c' cc: /tmp/tmpXgyyAq/file.c customize UnixCCompiler using build_ext running install_lib creating /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7 creating /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages creating /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse creating /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon/precon.so -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon/__config__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon/__init__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/precon/setup.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/__init__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse creating /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse/__init__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse/__config__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse/setup.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse/pysparseMatrix.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse/sparseMatrix.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/sparse/spmatrix.so -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse creating /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/umfpack.so -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/setup.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/pysparseSuperLU.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/__init__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/directSolver.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/__config__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/pysparseUmfpack.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/direct/superlu.so -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct creating /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/krylov.so -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/__init__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/__config__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/itsolvers_util.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/itsolvers/setup.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/setup.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/version.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/__config__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse creating /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/misc/__init__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/misc/system.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc creating /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen/setup.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen/__init__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen/__config__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/eigen/jdsym.so -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen creating /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/tools/sptime.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/tools/sparray.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/tools/spmatrix_util.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/tools/__init__.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/tools/poisson.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-4.9-DEVELOPMENT-x86_64-2.7/pysparse/tools/poisson_vec.py -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon/__config__.py to __config__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon/setup.py to setup.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/__config__.py to __config__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/setup.py to setup.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/pysparseMatrix.py to pysparseMatrix.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/sparseMatrix.py to sparseMatrix.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/setup.py to setup.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/pysparseSuperLU.py to pysparseSuperLU.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/directSolver.py to directSolver.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/__config__.py to __config__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/pysparseUmfpack.py to pysparseUmfpack.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers/__config__.py to __config__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers/itsolvers_util.py to itsolvers_util.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers/setup.py to setup.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/setup.py to setup.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/version.py to version.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/__config__.py to __config__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc/system.py to system.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen/setup.py to setup.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen/__config__.py to __config__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/sptime.py to sptime.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/sparray.py to sparray.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/spmatrix_util.py to spmatrix_util.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/__init__.py to __init__.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/poisson.py to poisson.pyc byte-compiling /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/poisson_vec.py to poisson_vec.pyc writing byte-compilation script '/tmp/tmpkb94pZ.py' /usr/local/bin/python2.7 -O /tmp/tmpkb94pZ.py removing /tmp/tmpkb94pZ.py running install_data creating /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/dsp_defs.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/minres.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/gmres.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/blas.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/cgs.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/qmrs.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/fortran.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/lapack.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/spmatrix_api.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/csr_mat.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/sss_mat.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/pcg.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/bicgstab.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/mmio.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/util.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/spmatrix.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /wrkdirs/math/py-pysparse/pysparse-f8430bd/pysparse/include/ll_mat.h -> /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ running install_clib customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpMMHy5t/tmp creating /tmp/tmpMMHy5t/tmp/tmpMMHy5t compile options: '-MMD -MF /tmp/tmpMMHy5t/file.c.d -c' cc: /tmp/tmpMMHy5t/file.c running install_egg_info running egg_info creating pysparse.egg-info writing requirements to pysparse.egg-info/requires.txt writing pysparse.egg-info/PKG-INFO writing top-level names to pysparse.egg-info/top_level.txt writing dependency_links to pysparse.egg-info/dependency_links.txt writing manifest file 'pysparse.egg-info/SOURCES.txt' reading manifest file 'pysparse.egg-info/SOURCES.txt' writing manifest file 'pysparse.egg-info/SOURCES.txt' Copying pysparse.egg-info to /wrkdirs/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse-1.3.dev0-py2.7.egg-info running install_scripts writing list of installed files to '/wrkdirs/math/py-pysparse/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for py27-pysparse-1.3_3 file sizes/checksums [130]: .. done packing files [130]: .. done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for py27-pysparse-1.3_3 build of math/py-pysparse ended at Mon Sep 18 23:42:45 PDT 2017 build time: 00:01:38