=> Building biology/diamond build started at Mon Sep 18 22:35:39 PDT 2017 port directory: /usr/ports/biology/diamond building for: DragonFly pkgbox64.dragonflybsd.org 4.9-DEVELOPMENT DragonFly v4.9.0.503.g33553-DEVELOPMENT #21: Fri Aug 4 16:51:32 PDT 2017 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: jrm@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/Release48-default/ref/../10//usr/ports/biology/diamond/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400908 Jail OSVERSION: 400801 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release48-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=diamond-0.9.10 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release48-default/ref/.p/pool MASTERNAME=Release48-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/biology/diamond XDG_CONFIG_HOME=/wrkdirs/biology/diamond HOME=/wrkdirs/biology/diamond TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/biology/diamond XDG_CONFIG_HOME=/wrkdirs/biology/diamond HOME=/wrkdirs/biology/diamond TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -DNDEBUG -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -DNDEBUG -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=4.8 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/diamond" EXAMPLESDIR="share/examples/diamond" DATADIR="share/diamond" WWWDIR="www/diamond" ETCDIR="etc/diamond" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/diamond DOCSDIR=/usr/local/share/doc/diamond EXAMPLESDIR=/usr/local/share/examples/diamond WWWDIR=/usr/local/www/diamond ETCDIR=/usr/local/etc/diamond --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License AGPLv3 accepted by the user =========================================================================== =================================================== ===> diamond-0.9.10 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz Installing pkg-1.10.1... Extracting pkg-1.10.1: .......... done ===> diamond-0.9.10 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of diamond-0.9.10 =========================================================================== =================================================== =========================================================================== =================================================== ===> License AGPLv3 accepted by the user => bbuchfink-diamond-v0.9.10_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/bbuchfink/diamond/tar.gz/v0.9.10?dummy=/bbuchfink-diamond-v0.9.10_GH0.tar.gz fetch: https://codeload.github.com/bbuchfink/diamond/tar.gz/v0.9.10?dummy=/bbuchfink-diamond-v0.9.10_GH0.tar.gz: size unknown fetch: https://codeload.github.com/bbuchfink/diamond/tar.gz/v0.9.10?dummy=/bbuchfink-diamond-v0.9.10_GH0.tar.gz: size of remote file is not known bbuchfink-diamond-v0.9.10_GH0.tar.gz -1 B 0 Bps ===> Fetching all distfiles required by diamond-0.9.10 for building =========================================================================== =================================================== ===> License AGPLv3 accepted by the user ===> Fetching all distfiles required by diamond-0.9.10 for building => SHA256 Checksum OK for bbuchfink-diamond-v0.9.10_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License AGPLv3 accepted by the user ===> Fetching all distfiles required by diamond-0.9.10 for building ===> Extracting for diamond-0.9.10 => SHA256 Checksum OK for bbuchfink-diamond-v0.9.10_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for diamond-0.9.10 ===> Applying ports patches for diamond-0.9.10 =========================================================================== =================================================== ===> diamond-0.9.10 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.8.2.txz Installing cmake-3.8.2... `-- Installing cmake-modules-3.8.2... `-- Extracting cmake-modules-3.8.2: .......... done `-- Installing curl-7.55.0... | `-- Installing ca_root_nss-3.32... | `-- Extracting ca_root_nss-3.32: ........ done | `-- Installing krb5-1.15.1_5... | | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.2.6... | | `-- Extracting indexinfo-0.2.6: .... done | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | | `-- Installing libressl-2.5.5... | | `-- Extracting libressl-2.5.5: .......... done | | `-- Installing pkgconf-1.3.7,1... | | `-- Extracting pkgconf-1.3.7,1: .......... done | | `-- Installing readline-7.0.3... | | `-- Installing ncurses-6.0_3... | | `-- Extracting ncurses-6.0_3: .......... done | | `-- Extracting readline-7.0.3: .......... done | `-- Extracting krb5-1.15.1_5: .......... done | `-- Installing libnghttp2-1.24.0... | `-- Extracting libnghttp2-1.24.0: .......... done `-- Extracting curl-7.55.0: .......... done `-- Installing expat-2.2.1... `-- Extracting expat-2.2.1: .......... done `-- Installing jsoncpp-1.8.1... `-- Extracting jsoncpp-1.8.1: .......... done `-- Installing libarchive-3.3.1,1... | `-- Installing liblz4-1.7.5,1... | `-- Extracting liblz4-1.7.5,1: .......... done | `-- Installing lzo2-2.10_1... | `-- Extracting lzo2-2.10_1: .......... done `-- Extracting libarchive-3.3.1,1: .......... done `-- Installing libuv-1.13.1... `-- Extracting libuv-1.13.1: .......... done `-- Installing rhash-1.3.4... `-- Extracting rhash-1.3.4: .......... done Extracting cmake-3.8.2: .......... done Message from ca_root_nss-3.32: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from ncurses-6.0_3: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> diamond-0.9.10 depends on file: /usr/local/bin/cmake - found ===> Returning to build of diamond-0.9.10 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for diamond-0.9.10 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/biology/diamond/.build -- The C compiler identification is GNU 5.4.1 -- The CXX compiler identification is GNU 5.4.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/libz.so (found version "1.2.8") -- Looking for pthread.h -- Looking for pthread.h - found -- Found Threads: TRUE -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS -- Build files have been written to: /wrkdirs/biology/diamond/.build =========================================================================== =================================================== ===> Building for diamond-0.9.10 /usr/local/bin/cmake -H/wrkdirs/biology/diamond/diamond-0.9.10 -B/wrkdirs/biology/diamond/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/biology/diamond/.build/CMakeFiles /wrkdirs/biology/diamond/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- CMakeFiles/diamond.dir/all --- /usr/bin/make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend --- CMakeFiles/diamond.dir/depend --- cd /wrkdirs/biology/diamond/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/biology/diamond/diamond-0.9.10 /wrkdirs/biology/diamond/diamond-0.9.10 /wrkdirs/biology/diamond/.build /wrkdirs/biology/diamond/.build /wrkdirs/biology/diamond/.build/CMakeFiles/diamond.dir/DependInfo.cmake Scanning dependencies of target diamond /usr/bin/make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build --- CMakeFiles/diamond.dir/src/run/main.cpp.o --- --- CMakeFiles/diamond.dir/src/basic/config.cpp.o --- --- CMakeFiles/diamond.dir/src/util/tinythread.cpp.o --- --- 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