=> Building biology/cd-hit build started at Mon Sep 18 10:06:52 PDT 2017 port directory: /usr/ports/biology/cd-hit building for: DragonFly pkgbox64.dragonflybsd.org 4.9-DEVELOPMENT DragonFly v4.9.0.503.g33553-DEVELOPMENT #21: Fri Aug 4 16:51:32 PDT 2017 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: bacon4000@gmail.com ident warning: no id keywords in /build/boomdata/data/.m/Release48-default/ref/../04//usr/ports/biology/cd-hit/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400908 Jail OSVERSION: 400801 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release48-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=cd-hit-4.6.6_2 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release48-default/ref/.p/pool MASTERNAME=Release48-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/biology/cd-hit XDG_CONFIG_HOME=/wrkdirs/biology/cd-hit HOME=/wrkdirs/biology/cd-hit TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/biology/cd-hit XDG_CONFIG_HOME=/wrkdirs/biology/cd-hit HOME=/wrkdirs/biology/cd-hit TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=4.8 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/cd-hit" EXAMPLESDIR="share/examples/cd-hit" DATADIR="share/cd-hit" WWWDIR="www/cd-hit" ETCDIR="etc/cd-hit" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cd-hit DOCSDIR=/usr/local/share/doc/cd-hit EXAMPLESDIR=/usr/local/share/examples/cd-hit WWWDIR=/usr/local/www/cd-hit ETCDIR=/usr/local/etc/cd-hit --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> cd-hit-4.6.6_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz Installing pkg-1.10.1... Extracting pkg-1.10.1: .......... done ===> cd-hit-4.6.6_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of cd-hit-4.6.6_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by cd-hit-4.6.6_2 for building =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by cd-hit-4.6.6_2 for building => SHA256 Checksum OK for weizhongli-cdhit-V4.6.6_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by cd-hit-4.6.6_2 for building ===> Extracting for cd-hit-4.6.6_2 => SHA256 Checksum OK for weizhongli-cdhit-V4.6.6_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for cd-hit-4.6.6_2 =========================================================================== =================================================== ===> cd-hit-4.6.6_2 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz Installing gmake-4.2.1_1... `-- Installing indexinfo-0.2.6... `-- Extracting indexinfo-0.2.6: .... done `-- Installing gettext-runtime-0.19.8.1_1... `-- Extracting gettext-runtime-0.19.8.1_1: .......... done Extracting gmake-4.2.1_1: .......... done ===> cd-hit-4.6.6_2 depends on executable: gmake - found ===> Returning to build of cd-hit-4.6.6_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for cd-hit-4.6.6_2 =========================================================================== =================================================== ===> Building for cd-hit-4.6.6_2 gmake[1]: Entering directory '/wrkdirs/biology/cd-hit/cdhit-4.6.6' gmake[1]: Nothing to be done for 'Makefile'. c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit-common.c++ -c c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit-utility.c++ -c c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit.c++ -c c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit-est.c++ -c c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit-2d.c++ -c c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit-est-2d.c++ -c c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit-div.c++ -c c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit-454.c++ -c c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit.o cdhit-common.o cdhit-utility.o -o cd-hit c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit-est.o cdhit-common.o cdhit-utility.o -o cd-hit-est c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit-2d.o cdhit-common.o cdhit-utility.o -o cd-hit-2d c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit-est-2d.o cdhit-common.o cdhit-utility.o -o cd-hit-est-2d c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit-div.o cdhit-common.o cdhit-utility.o -o cd-hit-div c++ -fopenmp -O2 -pipe -O2 -fno-strict-aliasing cdhit-454.o cdhit-common.o cdhit-utility.o -o cd-hit-454 gmake[1]: Leaving directory '/wrkdirs/biology/cd-hit/cdhit-4.6.6' =========================================================================== =================================================== =========================================================================== =================================================== ===> Staging for cd-hit-4.6.6_2 ===> Generating temporary packing list gmake[1]: Entering directory '/wrkdirs/biology/cd-hit/cdhit-4.6.6' gmake[1]: Nothing to be done for 'Makefile'. for prog in cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454; do \ install -m 0755 $prog /wrkdirs/biology/cd-hit/stage/usr/local/bin; \ done install -m 0755 *.pl /wrkdirs/biology/cd-hit/stage/usr/local/bin; gmake[1]: Leaving directory '/wrkdirs/biology/cd-hit/cdhit-4.6.6' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for cd-hit-4.6.6_2 file sizes/checksums [36]: . done packing files [36]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for cd-hit-4.6.6_2 build of biology/cd-hit ended at Mon Sep 18 10:07:21 PDT 2017 build time: 00:00:29