=> Building biology/ncbi-blast+ build started at Mon Sep 18 22:37:24 PDT 2017 port directory: /usr/ports/biology/ncbi-blast+ building for: DragonFly pkgbox64.dragonflybsd.org 4.9-DEVELOPMENT DragonFly v4.9.0.503.g33553-DEVELOPMENT #21: Fri Aug 4 16:51:32 PDT 2017 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: bacon4000@gmail.com ident warning: no id keywords in /build/boomdata/data/.m/Release48-default/ref/../04//usr/ports/biology/ncbi-blast+/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400908 Jail OSVERSION: 400801 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release48-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=ncbi-blast+-2.5.0_2 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release48-default/ref/.p/pool MASTERNAME=Release48-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- AR="ar cr" --without-boost --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ncbi_cv_prog_amq_w=no MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/biology/ncbi-blast+ XDG_CONFIG_HOME=/wrkdirs/biology/ncbi-blast+ HOME=/wrkdirs/biology/ncbi-blast+ TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/biology/ncbi-blast+ XDG_CONFIG_HOME=/wrkdirs/biology/ncbi-blast+ HOME=/wrkdirs/biology/ncbi-blast+ TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="gcc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="g++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly4 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=4.8 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PERL_VERSION=5.24.2 PERL_VER=5.24 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.24 PROFILE="@comment " DOCSDIR="share/doc/blast+" EXAMPLESDIR="share/examples/blast+" DATADIR="share/blast+" WWWDIR="www/blast+" ETCDIR="etc/blast+" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/blast+ DOCSDIR=/usr/local/share/doc/blast+ EXAMPLESDIR=/usr/local/share/examples/blast+ WWWDIR=/usr/local/www/blast+ ETCDIR=/usr/local/etc/blast+ --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License PD accepted by the user =========================================================================== =================================================== ===> ncbi-blast+-2.5.0_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz Installing pkg-1.10.1... Extracting pkg-1.10.1: .......... done ===> ncbi-blast+-2.5.0_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-blast+-2.5.0_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.5.0_2 for building =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.5.0_2 for building => SHA256 Checksum OK for ncbi-blast-2.5.0+-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.5.0_2 for building ===> Extracting for ncbi-blast+-2.5.0_2 => SHA256 Checksum OK for ncbi-blast-2.5.0+-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for ncbi-blast+-2.5.0_2 ===> Applying ports patches for ncbi-blast+-2.5.0_2 ===> Applying dragonfly patches for ncbi-blast+-2.5.0_2 /usr/bin/sed -i.bak -e 's|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|' -e '/--infodir=DIR/d' -e '/--mandir=DIR/d' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/configure /usr/bin/sed -i.bak -e 's|@prefix@|/wrkdirs/biology/ncbi-blast+/stage@prefix@|g' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.top =========================================================================== =================================================== ===> ncbi-blast+-2.5.0_2 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz Installing gmake-4.2.1_1... `-- Installing indexinfo-0.2.6... `-- Extracting indexinfo-0.2.6: .... done `-- Installing gettext-runtime-0.19.8.1_1... `-- Extracting gettext-runtime-0.19.8.1_1: .......... done Extracting gmake-4.2.1_1: .......... done ===> ncbi-blast+-2.5.0_2 depends on executable: gmake - found ===> Returning to build of ncbi-blast+-2.5.0_2 ===> ncbi-blast+-2.5.0_2 depends on file: /usr/local/bin/python2.7 - not found ===> Installing existing package /packages/All/python27-2.7.13_7.txz Installing python27-2.7.13_7... `-- Installing expat-2.2.1... `-- Extracting expat-2.2.1: .......... done `-- Installing libffi-3.2.1... `-- Extracting libffi-3.2.1: .......... done `-- Installing libressl-2.5.5... `-- Extracting libressl-2.5.5: .......... done `-- Installing ncurses-6.0_3... `-- Extracting ncurses-6.0_3: .......... done `-- Installing readline-7.0.3... `-- Extracting readline-7.0.3: .......... done Extracting python27-2.7.13_7: .......... done Message from ncurses-6.0_3: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.13_7: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> ncbi-blast+-2.5.0_2 depends on file: /usr/local/bin/python2.7 - found ===> Returning to build of ncbi-blast+-2.5.0_2 ===> ncbi-blast+-2.5.0_2 depends on package: perl5>=5.24<5.25 - not found ===> Installing existing package /packages/All/perl5-5.24.2.txz Installing perl5-5.24.2... Extracting perl5-5.24.2: .......... done Message from perl5-5.24.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> ncbi-blast+-2.5.0_2 depends on package: perl5>=5.24<5.25 - found ===> Returning to build of ncbi-blast+-2.5.0_2 =========================================================================== =================================================== ===> ncbi-blast+-2.5.0_2 depends on shared library: libpcre.so - not found ===> Installing existing package /packages/All/pcre-8.40_1.txz Installing pcre-8.40_1... 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liblapack... no checking for liblmdb... no configure: looking for configurables below /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++... configure: ...done configure: updating cache config.cache configure: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/config.status config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/html/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial/datatool/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/docsum/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/omssa/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/cdd/Makefile 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/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib/Makefile.precompile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/./Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc/common/ncbi_build_ver.h config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc/ncbiconf_unix.h config.status: executing default commands /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib/ncbicfg.c is updated /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc/common/ncbi_build_ver.h is updated gmake[1]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/helpers' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/helpers TMPL=run_with_lock -kw all gmake[2]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/helpers' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/helpers/run_with_lock.c. gcc -c -g -O2 /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc run_with_lock.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lm -o run_with_lock strip run_with_lock /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f run_with_lock /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/run_with_lock gmake[2]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[1]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/helpers' Platform not defined for DragonFly x86_64 -- please fix me Prebuilt project_tree_builder not found =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O LIBRARIES: build as static by default FEATURES: GCC MT LFS DLL unix WinMain PACKAGES: enabled: Iconv Z BZ2 PCRE PYTHON PYTHON27 PERL MAGIC disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GMP GCRYPT NETTLE GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON25 PYTHON26 PYTHON3 Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.Spirit Boost.System Boost.Test Boost.Test.Included Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MIMETIC GSOAP AVRO Cereal SASL2 MONGODB GMOCK LAPACK LMDB PROJECTS: enabled: cgi serial objects dbapi app algo disabled: local_lbsm connext ncbi_crypt bdb ctools gui gbench Tools / flags / paths: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.mk Configuration header: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc/ncbiconf_unix.h To build everything: cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build && /usr/local/bin/gmake all_r or simply run /usr/local/bin/gmake in the current directory ******* CONFIGURATION SUCCESSFUL ******* =========================================================================== =================================================== ===> Building for ncbi-blast+-2.5.0_2 gmake[1]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++' if test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build && gmake -f Makefile.flat; \ elif test -s ""; then \ cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build && gmake -w all_p; \ else \ cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build && gmake -w all_r; \ fi gmake[2]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/db/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/db/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/db/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT db/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/db/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/ctools/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/ctools/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/ctools/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT ctools/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/ctools/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/sra/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/sra/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/sra/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT sra/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/sra/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/gui/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/gui/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/gui/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT gui/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/gui/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/sample/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/sample/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/sample/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT sample/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/sample/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/internal/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/internal/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/internal/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT internal/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/internal/Makefile /usr/local/bin/gmake -C corelib -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib/test/Makefile gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib TMPL=corelib -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib TMPL=test_mt -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib TMPL=corelib -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_system.cpp: In function 'bool ncbi::SetMemoryLimitHard(size_t, ncbi::TLimitsPrintHandler, ncbi::TLimitsPrintParameter)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_system.cpp:384:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rl.rlim_cur > max_size) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_system.cpp:403:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rlas.rlim_cur > cur_soft_limit) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp:849:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbidiag.hpp:1810:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp:1819:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp:979:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp:1882:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp:979:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp:1907:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp:979:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp:1939:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp:979:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp:3221:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbifile.hpp:48, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiapp.hpp:354:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^ gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/guard.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/expr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/version.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_os_unix.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbifile.cpp: In function 'void ncbi::s_GetFileSystemInfo(const string&, ncbi::CFileUtil::SFileSystemInfo*, ncbi::TFileSystemInfo)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbifile.cpp:4883:10: warning: variable 'need_name_max' set but not used [-Wunused-but-set-variable] bool need_name_max = true; ^ 2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/obj_store.cpp -o obj_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/syslog.cpp -o syslog.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/request_ctx.cpp -o request_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/request_control.cpp -o request_control.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/expr.cpp -o expr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/resource_info.cpp -o resource_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/guard.cpp -o guard.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib TMPL=test_mt -w all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/test_mt.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib/test' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -C util -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/diff/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/diff/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT diff/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/diff/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/image/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/image/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/image/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT image/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/image/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/qparse/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/qparse/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT qparse/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/qparse/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/demo/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/demo/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/demo/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util TMPL=util -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util TMPL=util -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/format_guess.cpp: In static member function 'static bool ncbi::CFormatGuess::IsLineAugustus(const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/format_guess.cpp:2683:75: warning: logical not is only applied to the left hand side of comparison [-Wlogical-not-parentheses] if (!NStr::SplitInTwo(remaining, " \t", head, tail) || !head.size() == 1 || ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/format_guess.cpp:2691:75: warning: logical not is only applied to the left hand side of comparison [-Wlogical-not-parentheses] if (!NStr::SplitInTwo(remaining, " \t", head, tail) || !head.size() == 1 || ^ gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/stream_source.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/table_printer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/util_misc.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/rangelist.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/distribution.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/scheduler.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/itransaction.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/uttp.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/util_exception.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/line_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/miscmath.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/static_set.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/dictionary.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/unicode.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/md5.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/ascii85.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/format_guess.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/logrotate.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/strsearch.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/smalldns.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/itree.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/checksum.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/utf8.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/random_gen.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/random_gen.cpp -o random_gen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/utf8.cpp -o utf8.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/checksum.cpp -o checksum.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/bytesrc.cpp -o bytesrc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/strbuffer.cpp -o strbuffer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread 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itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xutil.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -C regexp -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/regexp' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/regexp TMPL=regexp -w mark-as-disabled gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/regexp' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/regexp' /usr/local/bin/gmake -C xregexp -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/regexp' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/xregexp TMPL=xregexp -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/xregexp TMPL=xregexp -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/xregexp/regexp.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include -I/usr/local/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include -I/usr/local/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include -I/usr/local/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -C compress -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress' /usr/local/bin/gmake -C bzip2 -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -w mark-as-disabled gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/local/bin/gmake -C zlib -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/zlib TMPL=zlib -w mark-as-disabled gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/local/bin/gmake -C api -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/api' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api TMPL=compress -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/api' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api TMPL=compress -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive_zip.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/compress.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/stream.cpp -o stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/tar.cpp -o tar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive.cpp -o archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xcompress.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress' /usr/local/bin/gmake -C diff -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/diff' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/diff' /usr/local/bin/gmake -C image -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/image' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/image' /usr/local/bin/gmake -C tables -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/tables/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/tables/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables/test/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/tables TMPL=tables -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/tables TMPL=tables -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_tables.log.new: No such file or directory. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/tables/raw_scoremat.c. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.tables.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/tables/raw_scoremat.c. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.tables.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -C creaders -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/creaders TMPL=creaders -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/creaders TMPL=creaders -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/creaders/alnread.c. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.a .libcreaders.a.stamp ar cr libcreaders.a alnread.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libcreaders.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libcreaders.a /bin/ln -f .creaders.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.creaders.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -C sequtil -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil TMPL=sequtil -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil TMPL=sequtil -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_shared.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.sequtil.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -C bitset -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/bitset/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/bitset/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/bitset/demo/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/util/bitset/demo/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/test' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset' /usr/local/bin/gmake -C qparse -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/qparse' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/qparse' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/test' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/demo' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/demo' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -C connect -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ext/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ext/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ext/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT ext/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/ext/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/daemons/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/daemons/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT daemons/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/daemons/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=connect -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=connssl -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=xxconnect -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=xconnect -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=xthrserv -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' awk: can't open file /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find connect/connect in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat awk: can't open file /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find connect/xconnect in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat awk: can't open file /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find connect/xxconnect in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=connect -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/run_with_lock: Adjusting base from make_connect to make__connect_common per /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/.#lock-map. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/parson.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_lbos.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_local.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_lbsmd_stub.c. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/parson.c -o parson.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o parson.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=connssl -w all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_gnutls.c. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=xxconnect -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/run_with_lock: Adjusting base from make_xxconnect to make__connect_common per /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/.#lock-map. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_lbos_cxx.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_socket_cxx.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_gnutls.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=xconnect -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/.#lock-map. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o parson.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_gnutls.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=xthrserv -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/threaded_server.cpp:33:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/threaded_server.cpp:33:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/connection_pool.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/server.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/threaded_server.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/server.cpp -o server.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_xthrserv.log.new: No such file or directory. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/connection_pool.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/server.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/threaded_server.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/server.cpp -o server.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -C services -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services/test/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services TMPL=xconnserv -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services TMPL=xconnserv -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/tmp_wn_info.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/pack_int.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/util.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/balancing.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_worker.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/netservice_api.cpp -o netservice_api.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/balancing.cpp -o balancing.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include 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-I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/tmp_wn_info.cpp -o tmp_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o balancing.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o pack_int.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o tmp_wn_info.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/neticache_client.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/rm -f libncbi_xcache_netcache-dll.so .libncbi_xcache_netcache-dll.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xcache_netcache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC neticache_client.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.so /bin/ln -f .ncbi_xcache_netcache-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/blob_storage_netcache.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -C ext -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/ext' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/test' /usr/local/bin/gmake -C daemons -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/daemons' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/daemons' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -C cgi -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/cgi' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/cgi/test/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi TMPL=cgi -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi TMPL=fcgi -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/cgi' awk: can't open file /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find cgi/cgi in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat awk: can't open file /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find cgi/fcgi in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi TMPL=cgi -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/.#lock-map. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/user_agent.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/ncbicgi.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi TMPL=fcgi -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/run_with_lock: Adjusting base from make_fcgi to make__cgi_common per /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/.#lock-map. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/fcgi_run.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include -DNCBI_XFCGI_EXPORTS /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/cgi/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/cgi/test' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -C html -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/html' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/html/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/demo/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/demo/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/html/demo/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html TMPL=html -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/html' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html TMPL=html -w all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/html' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/writer_htmlenc.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/html_exception.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/indentstream.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/components.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/selection.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/pager.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/page.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/html.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/node.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/html.cpp -o html.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/page.cpp -o page.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/selection.cpp -o selection.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/components.cpp -o components.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/indentstream.cpp -o indentstream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/html_exception.cpp -o html_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xhtml.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/html/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/html/test' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/html/demo' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/html/demo' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -C build-system -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system' /usr/local/bin/gmake -C helpers -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/helpers' /usr/local/bin/gmake[4] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/helpers' /usr/local/bin/gmake -C project_tree_builder -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/local/lib -lpcre -lm -o project_tree_builder strip project_tree_builder /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/project_tree_builder gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/local/bin/gmake -C msbuild -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w mark-as-disabled gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/build-system' /usr/local/bin/gmake -C serial -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/soap/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/soap/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT soap/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial/soap/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial TMPL=serial -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial TMPL=cserial -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial TMPL=serial -w all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/rpcbase.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/serializable.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objstack.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objlist.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objhook.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/exception.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/serial.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/iterator.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objostr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objistr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/choice.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/variant.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/member.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/memberid.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/continfo.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/typemap.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/typeref.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objectio.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/hookdata.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objectiter.cpp -o objectiter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/objectio.cpp -o objectio.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/typeref.cpp -o typeref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/typemap.cpp -o typemap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/enumerated.cpp -o enumerated.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include 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/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial TMPL=cserial -w all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/serialasn.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/asntypes.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/asntypes.cpp -o asntypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -C datatool -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial/datatool' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool TMPL=datatool -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/datatool.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/classstr.cpp -o classstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -o datatool strip datatool /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f datatool /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial/datatool' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial/test' /usr/local/bin/gmake -C soap -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial/soap' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial/soap' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -C db -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/db' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/db' /usr/local/bin/gmake -C dbapi -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/simple/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/simple/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT simple/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/simple/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/lang_bind/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/lang_bind/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT lang_bind/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/test/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi TMPL=dbapi -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi TMPL=dbapi -w all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/rw_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/variant.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/variant.cpp -o variant.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.dbapi.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_dbapi.log.new: No such file or directory. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/rw_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/variant.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/variant.cpp -o variant.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.dbapi.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C driver -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/util/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/util/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT util/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT ctlib/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/ftds64/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/ftds64/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/ftds64/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT ftds64/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds64/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT ftds95/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds95/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dblib/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dblib/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dblib/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT dblib/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/dblib/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/mysql/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/mysql/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT mysql/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/samples/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT samples/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/handle_stack.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/exception.cpp -o exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/public.cpp -o public.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/types.cpp -o types.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/memory_store.cpp -o memory_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libdbapi_driver-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C util -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/util' /usr/local/bin/gmake -C ctlib -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /usr/local/bin/gmake -C ftds64 -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds64' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds64' /usr/local/bin/gmake -C ftds95 -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' /usr/local/bin/gmake -C ftds-default -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /usr/local/bin/gmake -C dblib -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/dblib' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/dblib' /usr/local/bin/gmake -C mysql -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /usr/local/bin/gmake -C odbc -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w mark-as-disabled gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -C samples -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C simple -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/simple' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/simple' /usr/local/bin/gmake -C cache -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/cache' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cache/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cache/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cache/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/cache/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cache/admintool/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cache/admintool/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cache/admintool/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT admintool/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/cache/admintool/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/cache' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/cache' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp -o dbapi_blob_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp -o dbapi_blob_cache_cf.o /bin/rm -f libncbi_xcache_dbapi.a .libncbi_xcache_dbapi.a.stamp ar cr libncbi_xcache_dbapi.a dbapi_blob_cache.o dbapi_blob_cache_cf.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi.a /bin/ln -f .ncbi_xcache_dbapi.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi.dep /bin/rm -f libncbi_xcache_dbapi-dll.so .libncbi_xcache_dbapi-dll.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xcache_dbapi-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC dbapi_blob_cache.o dbapi_blob_cache_cf.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -ldbapi -ldbapi_driver-dll -lxncbi -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi-dll.so /bin/ln -f .ncbi_xcache_dbapi-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi-dll.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/cache/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/cache/test' /usr/local/bin/gmake -C admintool -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/cache/admintool' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/cache/admintool' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake -C lang_bind -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C objects -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/Makefile.sources builddir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects -w all Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/usr/local/bin/gmake -w"; export MAKE; \ ( cd $i && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-w" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA -oc omssa -or objects/omssa -odi -od omssa.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m access.asn -M "" -oA -oc access -or objects/access -odi -od access.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd access.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat/scoremat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA -oc cdd -or objects/cdd -odi -od cdd.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m docsum.asn -M "" -oA -oc docsum -or objects/docsum -odi -od docsum.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA -oc biotree -or objects/biotree -odi -od biotree.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/cPlatform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me ++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m featdef.asn -M "" -oA -oc featdef -or objects/featdef -odi -od featdef.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit/seqsplit.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m insdseq.asn -M "" -oA -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m macro.asn -M "" -oA -oc macro -or objects/macro -odi -od macro.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m mim.asn -M "" -oA -oc mim -or objects/mim -odi -od mim.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars/medlars.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1' /wrkdirs/biology/ncPlatform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me bi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m objprt.asn -M "" -oA -oc objprt -or objects/objprt -odi -od objprt.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA -oc proj -or objects/proj -odi -od proj.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqblock/seqblock.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqres/seqres.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/sePlatform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Warning: (110.8) Found multiple [Taxon1-name] taxid._type settings; using the one from line 18 Platform not defined for DragonFly x86_64 -- please fix me q' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqblock' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqblock' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqres' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqres' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: EntPlatform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Warning: (810.1) No service name provided for CTrackMgrClient Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me ering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m tinyseq.asn -M "" -oA -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA -oc remap -or objects/remap -odi -od remap.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA -oc homologene -or objects/homologene -odi -od homologene.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtable' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtable' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit/submit.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/bioloPlatform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me gy/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m genesbyloc.asn -M "" -oA -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -C general -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/general' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/general/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh general all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general TMPL=general -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/general' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general TMPL=general -w all gy/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m genesbyloc.asn -M "" -oA -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump datatool: 2.16.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/uoconv.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general__.cpp -o general__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general___.cpp -o general___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.general.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/general/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/general/test' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -C biblio -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/biblio' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh biblio all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio TMPL=biblio -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio TMPL=biblio -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/citation_base.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.biblio.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake -C medline -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/medline' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh medline all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline TMPL=medline -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/medline' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline TMPL=medline -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.medline.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake -C pub -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pub' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh pub all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub TMPL=pub -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pub' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub TMPL=pub -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.pub.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake -C seqcode -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqcode' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh seqcode all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode TMPL=seqcode -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode TMPL=seqcode -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode/seqcode___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode/seqcode__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.seqcode.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake -C seq -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/Makefile.sources builddir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -w all Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/usr/local/bin/gmake -w"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../$x ; \ (cd $d && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqblock' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqblock' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqres' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqres' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtable' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtable' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh seq all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqblock/seqblock.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqres/seqres.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq TMPL=seq -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq TMPL=seq -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/usr/local/bin/gmake -w"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../$x ; \ (cd $d && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqblock' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqblock' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqres' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqres' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtable' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtable' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqblock/seqblock.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqres/seqres.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq' In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1381:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1385:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1390:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1364:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30:0, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function 'static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::__cxx11::string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42:0, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'ncbi::CTempString ncbi::objects::s_AaName(int)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (idx > 0 && idx < ArraySize(sc_TrnaList)) { ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static size_t ncbi::objects::CSubSource::CheckDateFormat(const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:457:14: warning: unused variable 'first_bad' [-Wunused-variable] bool first_bad = false; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:458:14: warning: unused variable 'first_future' [-Wunused-variable] bool first_future = false; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:459:14: warning: unused variable 'second_bad' [-Wunused-variable] bool second_bad = false; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:460:14: warning: unused variable 'second_future' [-Wunused-variable] bool second_future = false; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static std::__cxx11::string ncbi::objects::CSubSource::GetCollectionDateProblem(const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:509:10: warning: unused variable 'bad_format' [-Wunused-variable] bool bad_format = false; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:510:10: warning: unused variable 'in_future' [-Wunused-variable] bool in_future = false; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static std::vector > ncbi::objects::CSubSource::x_GetDateTokens(const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:739:12: warning: unused variable 'i' [-Wunused-variable] size_t i; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static std::__cxx11::string ncbi::objects::CSubSource::ValidateLatLonCountry(const string&, std::__cxx11::string&, bool, ncbi::objects::CSubSource::ELatLonCountryErr&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:1985:67: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(lat_lon, ",", 0, NPOS, NStr::eLast); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function 'bool ncbi::objects::s_ContainsWholeWord(const string&, const string&, ncbi::NStr::ECase)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:3554:74: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(test, word, 0, NPOS, NStr::eFirst, case_sense); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:3560:77: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(test, word, pos + 1, NPOS, NStr::eFirst, case_sense); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:10:0, from seqloc__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqloc/Seq_id.cpp: In static member function 'static ncbi::SIZE_TYPE ncbi::objects::CSeq_id::ParseIDs(ncbi::objects::CBioseq_Base::TId&, const ncbi::CTempString&, ncbi::objects::CSeq_id::TParseFlags)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqloc/Seq_id.cpp:1859:60: warning: 'static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Split(ss, "|", fasta_pieces, NStr::eNoMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2516:31: note: declared here static list& Split( ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( row_n == p_row ) { ^ gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/sofa_map.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include seqalign__.cpp -o seqalign__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include seqblock__.cpp -o seqblock__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include seqfeat__.cpp -o seqfeat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include seqloc__.cpp -o seqloc__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include seqres__.cpp -o seqres__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include seqtable__.cpp -o seqtable__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include seqloc___.cpp -o seqloc___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include seqtable___.cpp -o seqtable___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.seq.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq/test' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -C seqset -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqset' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh seqset all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset TMPL=seqset -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset TMPL=seqset -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/gb_release_file.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.seqset.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -C submit -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/submit' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh submit all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit TMPL=submit -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/submit' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit TMPL=submit -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit/submit___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit/submit__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.submit.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake -C seqedit -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqedit' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh seqedit all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit TMPL=seqedit -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit TMPL=seqedit -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit/seqedit___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit/seqedit__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.seqedit.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake -C seqsplit -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqsplit' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh seqsplit all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake -C id1 -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id1' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1 && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh id1 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1 TMPL=id1 -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1 TMPL=id1cli -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1 TMPL=id1 -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1/id1___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1/id1__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1 TMPL=id1cli -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1/id1_client_.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1/id1_client.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id1/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id1/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -C id2 -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id2' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2 && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh id2 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit/seqsplit.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2 TMPL=id2 -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2 TMPL=id2cli -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2 TMPL=id2 -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqsplit/seqsplit.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2/id2___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2/id2__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2 TMPL=id2cli -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2/id2_client_.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2/id2_client.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -C entrez2 -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrez2' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2/demo/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2 && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh entrez2 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2/entrez2___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2/entrez2__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2/entrez2_client.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -C pubmed -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pubmed' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh pubmed all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed TMPL=pubmed -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed TMPL=pubmed -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed/pubmed___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed/pubmed__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.pubmed.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -C medlars -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/medlars' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh medlars all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars TMPL=medlars -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars TMPL=medlars -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars/medlars___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars/medlars__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.medlars.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -C mla -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mla' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh mla all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars/medlars.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla TMPL=mla -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla TMPL=mlacli -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla TMPL=mla -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medlars/medlars.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla/mla___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla/mla__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla TMPL=mlacli -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla/mla_client_.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla/mla_client.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -C proj -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/proj' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh proj all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj TMPL=proj -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/proj' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj TMPL=proj -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj/proj___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj/proj__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.proj.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake -C scoremat -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/scoremat' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh scoremat all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat TMPL=scoremat -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat TMPL=scoremat -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat/scoremat___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat/scoremat__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.scoremat.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake -C blast -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blast' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh blast all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat/scoremat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast TMPL=blast -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast TMPL=xnetblastcli -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast TMPL=blast -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat/scoremat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast/names.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast/blast__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast TMPL=xnetblastcli -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast/blastclient_.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast/blastclient.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -C blastdb -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastdb' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh blastdb all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb TMPL=blastdb -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb TMPL=blastdb -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb/blastdb___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb/blastdb__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.blastdb.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake -C blastxml -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh blastxml all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml TMPL=blastxml -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml TMPL=blastxml -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml/blastxml___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml/blastxml__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.blastxml.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake -C blastxml2 -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml2' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2 && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake -C mmdb -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb/Makefile.sources builddir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb -w all Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/usr/local/bin/gmake -w"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb TMPL=mmdb -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb TMPL=mmdb -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/usr/local/bin/gmake -w"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2' /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb3___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb1__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include mmdb1__.cpp -o mmdb1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include mmdb2__.cpp -o mmdb2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include mmdb3__.cpp -o mmdb3__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include mmdb1___.cpp -o mmdb1___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include mmdb2___.cpp -o mmdb2___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.mmdb.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -C cn3d -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/cn3d' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh cn3d all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d TMPL=cn3d -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d TMPL=cn3d -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d/cn3d___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d/cn3d__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.cn3d.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake -C cdd -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/cdd' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh cdd all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd TMPL=cdd -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd TMPL=cdd -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd/cdd___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd/cdd__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.cdd.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake -C ncbimime -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/ncbimime' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh ncbimime all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -C pcsubstance -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pcsubstance' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake -C pcassay -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pcassay' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh pcassay all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay TMPL=pcassay -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay TMPL=pcassay -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay/pcassay___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay/pcassay__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.pcassay.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake -C gbseq -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbseq' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh gbseq all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq TMPL=gbseq -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq TMPL=gbseq -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq/gbseq___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq/gbseq__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.gbseq.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbseq' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_gbseq.log.new: No such file or directory. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq/gbseq___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq/gbseq__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.gbseq.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake -C insdseq -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/insdseq' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh insdseq all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq TMPL=insdseq -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq TMPL=insdseq -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq/insdseq___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq/insdseq__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.insdseq.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake -C tinyseq -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/tinyseq' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh tinyseq all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake -C biotree -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/biotree' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh biotree all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree TMPL=biotree -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree TMPL=biotree -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree/biotree___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree/biotree__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.biotree.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake -C entrezgene -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrezgene' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh entrezgene all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -C omssa -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/omssa' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh omssa all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa TMPL=omssa -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa TMPL=omssa -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa/omssa___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa/omssa__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.omssa.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake -C remap -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/remap' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh remap all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap TMPL=remap -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap TMPL=remapcli -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap TMPL=remap -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap/remap___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap/remap__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap TMPL=remapcli -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap/remap_client_.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap/remap_client.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -C seqtest -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqtest' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh seqtest all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest TMPL=seqtest -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest TMPL=seqtest -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest/seqtest___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest/seqtest__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.seqtest.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqtest' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_seqtest.log.new: No such file or directory. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest/seqtest___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest/seqtest__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.seqtest.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake -C taxon1 -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/taxon1' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1 && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh taxon1 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1/ctreecont.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1/taxon1__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -C taxon3 -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/taxon3' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3 && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh taxon3 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3/cached_taxon3.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3/taxon3.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3/taxon3__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/taxon3/cached_taxon3.cpp -o cached_taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o cached_taxon3.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.taxon3.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake -C gbproj -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbproj' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh gbproj all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit/submit.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj TMPL=gbproj -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj TMPL=gbproj -w all In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj/gbproj__.cpp:9:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj/ProjectFolder.cpp: In member function 'void ncbi::objects::CProjectFolder::RemoveAllChildItems()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^ /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/submit/submit.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj/gbproj___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj/gbproj__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.gbproj.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake -C trackmgr -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh trackmgr all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: *** No rule to make target '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/LZO.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' NOTE: skipping project "trackmgrgridcli" due to unmet requirements gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: *** No rule to make target '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/LZO.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' NOTE: skipping project "trackmgrgridcli" due to unmet requirements gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -C valerr -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/valerr' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh valerr all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr TMPL=valerr -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr TMPL=valerr -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr/valerr___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr/valerr__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.valerr.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake -C valid -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/valid' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh valid all Platform not defined for DragonFly x86_64 -- please fix me gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid TMPL=valid -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/valid' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid TMPL=valid -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid' In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid/valid__.cpp:2:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid/Comment_rule.cpp: In member function 'ncbi::objects::CComment_rule::TErrorList ncbi::objects::CComment_rule::IsValid(const ncbi::objects::CUser_object&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid/Comment_rule.cpp:290:28: warning: unused variable 'sev' [-Wunused-variable] CField_rule::TSeverity sev; ^ gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid/valid___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid/valid__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.valid.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake -C access -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/access' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh access all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access TMPL=access -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/access' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access TMPL=access -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access/access___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access/access__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access/access__.cpp -o access__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.access.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake -C docsum -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/docsum' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh docsum all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum TMPL=docsum -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum TMPL=docsum -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum/docsum__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.docsum.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/docsum' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_docsum.log.new: No such file or directory. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum/docsum__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.docsum.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake -C featdef -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/featdef' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh featdef all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef TMPL=featdef -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef TMPL=featdef -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef/featdef___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef/featdef__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.featdef.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake -C genomecoll -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genomecoll' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genomecoll/test/Makefile cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh genome_collection all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.16.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/make_asn.lock/usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.16.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll' . Acquired /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/make_asn.lock for PID 936035 (make_asn) Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.16.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.16.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genomecoll/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genomecoll/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -C homologene -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/homologene' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh homologene all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene TMPL=homologene -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene TMPL=homologene -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene/homologene___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene/homologene__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.homologene.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake -C mim -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mim' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh mim all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim TMPL=mim -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mim' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim TMPL=mim -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim/mim__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.mim.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake -C objprt -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/objprt' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh objprt all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt TMPL=objprt -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt TMPL=objprt -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt/objprt___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt/objprt__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.objprt.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake -C variation -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/variation' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/variation && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh variation all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/variation' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.16.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/variation' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/variation' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/variation' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/variation TMPL=variation -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/variation' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/variation TMPL=variation -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/variation' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.16.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/variation' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/variation/variation___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/variation/variation__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.variation.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -C macro -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/macro' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh macro all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro TMPL=macro -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/macro' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro TMPL=macro -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro' In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:129:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_WholeWordReplaceNocase(std::__cxx11::string&, const string&, const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Replace_func.cpp:61:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:129:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Replace_func.cpp:74:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:129:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Replace_func.cpp:76:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:129:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_ReplaceNocase(std::__cxx11::string&, const string&, const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Replace_func.cpp:88:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:129:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Replace_func.cpp:99:99: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:136:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Search_func.cpp: In member function 'bool ncbi::objects::CSearch_func::x_StringMayContainPlural(const string&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Search_func.cpp:97:58: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] arr = NStr::Tokenize(str, " ,", arr, NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:136:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Search_func.cpp: In member function 'bool ncbi::objects::CSearch_func::x_StringContainsUnderscore(const string&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Search_func.cpp:345:37: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] arr = NStr::Tokenize(str, "_", arr); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:143:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Simple_replace.cpp: In function 'bool ncbi::objects::SkipWeasel(std::__cxx11::string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Simple_replace.cpp:92:36: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str, " ", tokens); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:158:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'std::__cxx11::string ncbi::objects::CString_constraint::x_SkipWeasel(const string&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/String_constraint.cpp:190:37: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] arr = NStr::Tokenize(str, " ", arr); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:158:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'bool ncbi::objects::CString_constraint::x_DoesSingleStringMatchConstraint(const string&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/String_constraint.cpp:625:86: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(search, pattern, 0, NPOS, NStr::eFirst, case_sens); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:158:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/String_constraint.cpp:635:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(search, pattern, pFound + 1, NPOS, NStr::eFirst, case_sens); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:158:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/String_constraint.cpp:654:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(search, pattern, pFound + 1, NPOS, NStr::eFirst, case_sens); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:158:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/String_constraint.cpp:662:86: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(pattern, search, 0, NPOS, NStr::eFirst, case_sens); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:158:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/String_constraint.cpp:668:113: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(pattern.substr(pFound + 1), search, 0, NPOS, NStr::eFirst, case_sens); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp:72:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Location_constraint.cpp: In member function 'bool ncbi::objects::CLocation_constraint::x_DoesLocationMatchDistanceConstraint(ncbi::CConstRef, const ncbi::objects::CSeq_loc&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/Location_constraint.cpp:195:34: warning: 'pos2' may be used uninitialized in this function [-Wmaybe-uninitialized] return GetEnd3().Match(pos2); ^ gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.macro.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -C genesbyloc -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genesbyloc' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake -C coords -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/coords' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/coords && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh objcoords all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/coords' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m objcoords.asn -M "" -oA -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump datatool: 2.16.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/coords' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/coords' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/coords' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/coords TMPL=objcoords -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/coords' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/coords' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/coords TMPL=objcoords -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/coords' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m objcoords.asn -M "" -oA -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump datatool: 2.16.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/coords' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/coords/objcoords___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/coords/objcoords__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.objcoords.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/coords' /usr/local/bin/gmake -C varrep -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/varrep' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/varrep && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/new_module.sh varrep all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/varrep' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m varrep.asn -M "" -oA -oc varrep -or objects/varrep -odi -od varrep.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump datatool: 2.16.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/varrep' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/varrep' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/varrep' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/varrep TMPL=varrep -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/varrep' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/varrep TMPL=varrep -w all /usr/local/bin/gmake -w -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/varrep' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src -m varrep.asn -M "" -oA -oc varrep -or objects/varrep -odi -od varrep.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump datatool: 2.16.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/varrep' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/varrep/varrep___.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/varrep/varrep__.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.varrep.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -C objmgr -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/test/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr TMPL=objmgr -w export-headers gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr TMPL=objmgr -w all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_id_sort.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/annot_type_index.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/bioseq_ci.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/tse_chunk_info.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/tse_split_info.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seqdesc_ci.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_vector_ci.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_vector.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/handle_range.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/bioseq_set_handle.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_entry_handle.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_table_ci.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_annot_ci.cpp. Updating dependency information for 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/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/test' /usr/local/bin/gmake -C util -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/util' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util TMPL=util -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util TMPL=util -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/weight.cpp: In function 'double ncbi::objects::GetProteinWeight(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const ncbi::objects::CSeq_loc*, ncbi::objects::TGetProteinWeight)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/weight.cpp:121:12: warning: enumeration value 'eProcessed_propeptide' not handled in switch [-Wswitch] switch (prot.GetProcessed()) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetFlags(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp:804:45: warning: 'static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)' is deprecated [-Wdeprecated-declarations] NStr::Split( clause, ";", kywds ); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/util/strsearch.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp: In function 'bool x_EndsWithStrain(const ncbi::CTempString&, const ncbi::CTempString&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp:1068:80: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/util/strsearch.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp: In function 'std::__cxx11::string s_RemoveBracketedOrgFromEnd(std::__cxx11::string, std::__cxx11::string)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp:1704:61: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/util/strsearch.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp:1782:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp: In function 'size_t s_TitleEndsInOrganism(std::__cxx11::string&, ncbi::CTempString)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp:2397:68: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/util/strsearch.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp:2398:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos == idx + 2) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffix(const ncbi::objects::CBioseq_Handle&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp:2468:83: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/util/strsearch.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'std::__cxx11::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp:2653:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/objutil.cpp:1803:81: required from here /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/objutil.cpp:1731:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { ^ gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/weight.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/weight.cpp -o weight.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -C split -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/split' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split TMPL=id2_split -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/split' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split TMPL=id2_split -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/split_exceptions.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/blob_splitter.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/size.cpp -o size.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.id2_split.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -C objtools -w all_r || exit 5 gmake[3]: Entering directory 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/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/variation/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/writers/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/writers/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/writers/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT writers/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/writers/Makefile /usr/local/bin/gmake -C unit_test_util -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/unit_test_util' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/unit_test_util' /usr/local/bin/gmake -C readers -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/app/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/app/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT app/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers TMPL=xobjread -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers TMPL=xobjreadex -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers TMPL=xobjread -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_read.cpp:33:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_read.cpp:33:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_read.cpp:123:42: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", fields); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/readers/agp_read.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_read.cpp:33: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual ncbi::CRef ncbi::objects::CBedReader::ReadSeqAnnot(ncbi::ILineReader&, ncbi::objects::ILineErrorListener*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/bed_reader.cpp:148:34: warning: unused variable 'tbl' [-Wunused-variable] CSeq_annot::C_Data::TFtable& tbl = annot->SetData().SetFtable(); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/bed_reader.cpp: In member function 'void ncbi::objects::CBedReader::xSetFeatureColorFromScore(ncbi::CRef, const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/bed_reader.cpp:1266:20: warning: 'score' may be used uninitialized in this function [-Wmaybe-uninitialized] if (score < 0 || 1000 < score) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/fasta.cpp: In member function 'virtual bool ncbi::objects::CFastaReader::ParseGapLine(const TStr&, ncbi::objects::ILineErrorListener*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/fasta.cpp:1285:35: warning: 'static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiapp.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/readers/fasta.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/fasta.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp: In member function 'virtual bool ncbi::objects::CGFFReader::x_ParseStructuredComment(const TStr&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp:408:55: warning: 'static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "# \t", v, NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiutil.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/readers/gff_reader.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp: In member function 'virtual ncbi::CRef ncbi::objects::CGFFReader::x_ParseFeatureInterval(const TStr&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp:479:55: warning: 'static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", v, NStr::eNoMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiutil.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/readers/gff_reader.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp:482:58: warning: 'static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t", v, NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiutil.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/readers/gff_reader.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp: In member function 'virtual void ncbi::objects::CGFFReader::x_ParseV3Attributes(ncbi::objects::CGFFReader::SRecord&, const TStrVec&, ncbi::SIZE_TYPE&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp:930:53: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v[i], ";", v2, NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiutil.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/readers/gff_reader.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp:938:45: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(values, ",", vals); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiutil.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/readers/gff_reader.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/reader_base.cpp: In member function 'virtual bool ncbi::objects::CReaderBase::xIsTrackTerminator(const ncbi::CTempString&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/reader_base.cpp:672:41: warning: 'static ncbi::CTempString ncbi::NStr::TruncateSpaces(ncbi::CTempString, ncbi::NStr::ETrunc)' is deprecated [-Wdeprecated-declarations] return (NStr::TruncateSpaces(strLine) == "###"); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/reader_base.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2212:24: note: declared here static CTempString TruncateSpaces(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/readfeat.cpp: In function 'ncbi::CRef ncbi::objects::{anonymous}::GetBestId(const TId&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/readfeat.cpp:146:29: warning: large integer implicitly truncated to unsigned type [-Woverflow] Uint1 best_weight = UINT_MAX; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/readfeat.cpp: In constructor 'ncbi::objects::CFeature_table_reader_imp::CFeature_table_reader_imp(ncbi::ILineReader*, unsigned int, ncbi::objects::ILineErrorListener*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/readfeat.cpp:433:18: warning: 'ncbi::objects::CFeature_table_reader_imp::m_reader' will be initialized after [-Wreorder] ILineReader* m_reader; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/readfeat.cpp:430:18: warning: 'unsigned int ncbi::objects::CFeature_table_reader_imp::m_line_num' [-Wreorder] unsigned int m_line_num; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/readfeat.cpp:784:1: warning: when initialized here [-Wreorder] CFeature_table_reader_imp::CFeature_table_reader_imp(ILineReader* reader, unsigned int line_num, ILineErrorListener* pMessageListener) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/rm_reader.cpp: In member function 'virtual bool ncbi::objects::CRepeatMaskerReader::ParseRecord(const string&, ncbi::objects::SRepeatRegion&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/rm_reader.cpp:893:43: warning: 'static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)' is deprecated [-Wdeprecated-declarations] if ( NStr::Split( line, " \t", values ).size() < MIN_VALUE_COUNT ) { ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/rm_reader.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^ gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/line_error.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff3_sofa.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/read_util.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/in/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff3_reader.cpp: In member function 'bool ncbi::objects::CGff3Reader::xVerifyExonLocation(const string&, const ncbi::objects::CGff2Record&, ncbi::objects::ILineErrorListener*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff3_reader.cpp:271:10: warning: unused variable 'failed' [-Wunused-variable] bool failed = (containedInt.GetFrom() < containingInt.GetFrom()) || ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff2_data.cpp: In static member function 'static void ncbi::objects::CGff2Record::TokenizeGFF(std::vector&, const ncbi::CTempStringEx&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff2_data.cpp:220:68: warning: 'static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::TSplitFlags, std::vector*, ncbi::CTempString_Storage*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(in_line, "\t", columns, NStr::fSplit_MergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff2_data.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2675:28: note: declared here vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::x_FeatureTrimQualifiers(const ncbi::objects::CGff2Record&, ncbi::CRef)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff2_reader.cpp:832:38: warning: typedef 'TAttrs' locally defined but not used [-Wunused-local-typedefs] typedef CGff2Record::TAttributes TAttrs; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_converter.cpp: In member function 'void ncbi::CAgpConverter::LoadChromosomeMap(ncbi::CNcbiIstream&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_converter.cpp:143:44: warning: 'static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)' is deprecated [-Wdeprecated-declarations] NStr::Split(line, " \t", split_line); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbitime.hpp:62, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbifile.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_converter.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp: In member function 'void ncbi::objects::CUCSCRegionReader::xSmartFieldSplit(std::vector >&, ncbi::CTempString)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp:184:62: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t.-:", fields, NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^ c -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.a .libxobjread.a.stamp ar cr libxobjread.a read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o message_listener.o line_error.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjread.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxobjread.a /bin/ln -f .xobjread.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xobjread.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers TMPL=xobjreadex -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/glimmer_reader.cpp: In member function 'ncbi::CRef ncbi::CGlimmerReader::Read(ncbi::CNcbiIstream&, ncbi::objects::CScope&, int)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:113:42: warning: 'static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)' is deprecated [-Wdeprecated-declarations] NStr::Split(line, " \t", toks); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^ gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/idmapper_scope.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/idmapper_database.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/idmapper_config.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/idmapper.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/glimmer_reader.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/glimmer_reader.cpp -o glimmer_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/idmapper.cpp -o idmapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o /bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjreadex.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxobjreadex.a /bin/ln -f .xobjreadex.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xobjreadex.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -C app -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers/app' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers/app' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers/test' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -C blast -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT gene_info_writer/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer/Makefile /usr/local/bin/gmake -C seqdb_reader -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function 'std::__cxx11::string ncbi::s_SeqDB_TryPaths(const string&, const string&, char, bool, ncbi::CSeqDB_FileExistence&, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:356:79: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blast_paths, s_GetPathSplitter(), roads, NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbireg.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/metareg.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function 'const string* ncbi::s_CheckUniqueValues(const std::map, std::__cxx11::basic_string >&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2034:37: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v, ":", items); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In member function 'void ncbi::CSeqDB_IdRemapper::AddMapping(int, int, const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2068:36: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function 'void ncbi::s_GetDetails(const string&, std::__cxx11::string&, std::__cxx11::string&, std::__cxx11::string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2244:36: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&, ncbi::CSeqDBLockHold&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:938:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.seqdb.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O seqdb_demo.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o seqdb_demo strip seqdb_demo /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/seqdb_demo gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O seqdb_perf.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o seqdb_perf strip seqdb_perf /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/seqdb_perf gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -C seqdb_writer -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In constructor 'ncbi::CWriteDB_File::CWriteDB_File(const string&, const string&, int, Uint8, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:115:24: warning: unused variable 'MAX_FILE_SIZE' [-Wunused-variable] static const Uint8 MAX_FILE_SIZE = (1L << MAX_OFFSET_BITS) - 1L; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In member function 'int ncbi::CWriteDB_File::Write(const ncbi::CTempString&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:147:24: warning: unused variable 'MAX_OFFSET' [-Wunused-variable] static const Uint8 MAX_OFFSET = (1L << MAX_OFFSET_BITS) - 1L; ^ gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.writedb.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -C gene_info_reader -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp: In member function 'void ncbi::CGeneInfo::ToString(std::__cxx11::string&, bool, const string&, unsigned int) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:177:60: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(GetDescription(), " ", strDescrWords); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp: In static member function 'static void ncbi::CGeneFileUtils::ReadGeneInfo(ncbi::CNcbiIfstream&, int, ncbi::CRef&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:161:42: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(strBuf, "\t", strItems); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.gene_info.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O gene_info_reader_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o gene_info_reader strip gene_info_reader /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/gene_info_reader gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -C gene_info_writer -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /usr/local/bin/gmake -C services -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/services TMPL=blast_services -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/services TMPL=blast_services -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/services/blast_services.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.blast_services.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -C blastdb_format -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/blast' /usr/local/bin/gmake -C lds2 -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/lds2' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/lds2' /usr/local/bin/gmake -C data_loaders -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT lds2/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT patcher/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT asn_cache/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile /usr/local/bin/gmake -C genbank -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT pubseq/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT pubseq2/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /bin/rm -f libncbi_xreader-dll.so .libncbi_xreader-dll.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.so /bin/ln -f .ncbi_xreader-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/rm -f libncbi_xloader_genbank-dll.so .libncbi_xloader_genbank-dll.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_genbank-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC gbloader.o gbload_util.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.so /bin/ln -f .ncbi_xloader_genbank-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -C cache -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w export-headers gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_cache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_cache.o writer_cache.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.so /bin/ln -f .ncbi_xreader_cache-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -C pubseq -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /usr/local/bin/gmake -C id2 -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w export-headers gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /bin/ln -f .ncbi_xreader_id2.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/rm -f libncbi_xreader_id2-dll.so .libncbi_xreader_id2-dll.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id2-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_id2.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.so /bin/ln -f .ncbi_xreader_id2-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -C id1 -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w export-headers gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/rm -f libncbi_xreader_id1-dll.so .libncbi_xreader_id1-dll.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id1-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_id1.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lxconnect -lncbi_xreader-dll -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.so /bin/ln -f .ncbi_xreader_id1-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -C pubseq2 -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /usr/local/bin/gmake -C gicache -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w export-headers gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w all In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache_cxx.cpp:38:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'void x_DumpIndexCache(SGiDataIndex*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:148:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (bytes_written != data_index->m_IndexCacheLen*sizeof(int) && LogFunc) { ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache_cxx.cpp:38:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'void x_DumpDataCache(SGiDataIndex*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:175:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (bytes_written != data_index->m_DataCacheLen && LogFunc) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'void x_UnMapData(SGiDataIndex*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:243:49: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'Int8 {aka long int}' [-Wformat=] data_index->m_FileNamePrefix); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'Uint1 x_OpenIndexFile(SGiDataIndex*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:316:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (bytes_written != data_index->m_GiIndexLen*sizeof(Uint4) && LogFunc) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'Uint1 x_OpenDataFile(SGiDataIndex*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:363:78: warning: format '%lld' expects argument of type 'long long int', but argument 6 has type 'Int8 {aka long int}' [-Wformat=] data_index->m_DataLen, data_index->m_FileNamePrefix, open_err); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'int x_GetGiData(SGiDataIndex*, int, const char**)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:903:95: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'Int8 {aka long int}' [-Wformat=] sprintf(logmsg, "GI_CACHE: Possible corruption: gi_offset: %lld, gi: %d\n", gi_offset, gi); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'int s_DecodeGiAccession(const char*, char*, int)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:1755:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (strlen(acc_buf) < acc_len) { ^ gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache_cxx.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache_cxx.cpp -o gicache_cxx.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache_cxx.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /bin/ln -f .ncbi_xreader_gicache.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/rm -f libncbi_xreader_gicache-dll.so .libncbi_xreader_gicache-dll.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_gicache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_gicache.o gicache_cxx.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.so /bin/ln -f .ncbi_xreader_gicache-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -C lds2 -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /usr/local/bin/gmake -C blastdb -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -C patcher -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /usr/local/bin/gmake -C asn_cache -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/data_loaders' /usr/local/bin/gmake -C simple -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/simple TMPL=xobjsimple -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/simple TMPL=xobjsimple -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/simple/simple_om.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -C alnmgr -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp: In function 'void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef 'TAlnRngColl' locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:1467:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore > 0 && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore < 0 && ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (start_its_i->second->first != -1) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: 'width2' may be used uninitialized in this function [-Wmaybe-uninitialized] int width1, width2; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:38: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (plus && prev_start_plus_len < start || ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -C cddalignview -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/cddalignview' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/cddalignview' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/test' /usr/local/bin/gmake -C manip -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/manip' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/manip' /usr/local/bin/gmake -C cleanup -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/cleanup' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup TMPL=cleanup -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup TMPL=cleanup -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::IsGeneXrefUnnecessary(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const ncbi::objects::CGene_ref&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp:734:84: warning: 'ncbi::objects::sequence::ECompare ncbi::objects::sequence::Compare(const ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*)' is deprecated [-Wdeprecated-declarations] sequence::Compare(g->second->GetLocation(), gene->GetLocation(), &scope) == sequence::eSame) { ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/util/sequence.hpp:52:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp:59: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:200:20: note: declared here sequence::ECompare Compare(const CSeq_loc& loc1, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static ncbi::CConstRef ncbi::objects::CCleanup::GetGeneForFeature(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp:1182:101: warning: 'ncbi::objects::sequence::ECompare ncbi::objects::sequence::Compare(const ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*)' is deprecated [-Wdeprecated-declarations] sequence::ECompare cmp = sequence::Compare(gf->GetLocation(), feat.GetLocation(), &scope); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/util/sequence.hpp:52:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp:59: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:200:20: note: declared here sequence::ECompare Compare(const CSeq_loc& loc1, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::s_TitleEndsInOrganism(const string&, const string&, ncbi::SIZE_TYPE*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp:1987:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] answer = NStr::FindNoCase(sTitle, sPattern, 0, NPOS, NStr::eLast); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp: In function 'void ncbi::objects::s_RemoveOrgFromEndOfProtein(ncbi::objects::CBioseq&, std::__cxx11::string)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp:2041:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_CleanupOrgModNoteEC(ncbi::objects::COrg_ref&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:5317:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] org.IsSetTaxname() && NStr::Equal(org.GetTaxname(), (*it)->GetSubname()))) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_SeqFeatTRNABC(ncbi::objects::CSeq_feat&, ncbi::objects::CTrna_ext&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:5896:19: warning: unused variable 'comment' [-Wunused-variable] const string &comment = ( FIELD_IS_SET(feat, Comment) ? GET_FIELD(feat, Comment) : kEmptyStr ); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In function 'bool ncbi::objects::HasAuthor(const ncbi::objects::CPubdesc&, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:11115:10: warning: unused variable 'is_patent' [-Wunused-variable] bool is_patent = false; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In static member function 'static bool ncbi::objects::CNewCleanup_imp::ShouldRemoveAnnot(const ncbi::objects::CSeq_annot&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:11394:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (!s_RetainEmptyAnnot(annot) && ^ gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o newcleanupp.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -C format -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format TMPL=xformat -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format TMPL=xformat -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp: In function 'void ncbi::objects::s_SplitCommaSeparatedStringInParens(std::vector >&, const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp:874:120: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize( string_to_split.substr( 1, string_to_split.length() - amount_to_chop_off_end - 1), ",", output_vec ); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp:44: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp: In member function 'void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp:1393:49: warning: 'static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)' is deprecated [-Wdeprecated-declarations] NStr::Split( raw_exception, ",", exceptions ); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp:44: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp:1790:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp: In function 'void ncbi::objects::s_ParseParentQual(const ncbi::objects::CGb_qual&, std::__cxx11::list >&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp:3355:37: warning: 'static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)' is deprecated [-Wdeprecated-declarations] NStr::Split(val, "(,)", vals); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp:44: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp: In member function 'void ncbi::objects::CFeatureItem::x_AddRptUnitQual(const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp:3786:39: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(tmp, ",", units); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp:44: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/keywords_item.cpp: In member function 'void ncbi::objects::CKeywordsItem::x_AddKeyword(const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/keywords_item.cpp:378:38: warning: 'static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)' is deprecated [-Wdeprecated-declarations] NStr::Split( keyword, ";", kywds ); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/keywords_item.cpp:33: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/primary_item.cpp:213:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/primary_item.cpp:214:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (this_start < (15 + last_stop) ) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/reference_item.cpp: In static member function 'static void ncbi::objects::CReferenceItem::ChangeMedlineAuthorsToISO(ncbi::CRef)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/reference_item.cpp:1300:72: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(author_name, " ", tokens, NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/reference_item.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/source_item.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ^ gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_qual_slots.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/accession_item.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_T/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_IdComments(ncbi::objects::CBioseqContext&, ncbi::objects::CFlatGatherer::EGenomeAnnotComment) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gather_items.cpp:1017:34: warning: unused variable 'format' [-Wunused-variable] CCommentItem::ECommentFormat format = ctx.Config().DoHTML() ? ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gather_items.cpp: At global scope: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gather_items.cpp:747:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_file_generator.cpp:185:10: warning: unused variable 'nearFeatsSuppress' [-Wunused-variable] bool nearFeatsSuppress = false; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_file_generator.cpp:188:10: warning: variable 'isNgNtNwNz' set but not used [-Wunused-but-set-variable] bool isNgNtNwNz = false; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_file_generator.cpp:189:10: warning: variable 'isGED' set but not used [-Wunused-but-set-variable] bool isGED = false; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_file_generator.cpp:190:10: warning: variable 'isTPA' set but not used [-Wunused-but-set-variable] bool isTPA = false; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gbseq_formatter.cpp: In function 'void ncbi::objects::s_GBSeqStringCleanup(std::__cxx11::string&, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:82:36: warning: 'static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)' is deprecated [-Wdeprecated-declarations] NStr::Split(str, " \n\r\t\b", l); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gbseq_formatter.cpp: In member function 'virtual void ncbi::objects::CGBSeqFormatter::FormatGenomeProject(const ncbi::objects::CGenomeProjectItem&, ncbi::objects::IFlatTextOStream&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:358:37: warning: 'static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)' is deprecated [-Wdeprecated-declarations] NStr::Split(second, ",", ids); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gbseq_formatter.cpp: In member function 'void ncbi::objects::CGBSeqFormatter::x_StrOStreamToTextOStream(ncbi::objects::IFlatTextOStream&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:685:70: warning: 'static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)' is deprecated [-Wdeprecated-declarations] NStr::Split((string)CNcbiOstrstreamToString(m_StrStream), "\n", l); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_file_config.cpp: In function 'ncbi::objects::CFlatFileConfig::TGenbankBlocks ncbi::objects::{anonymous}::x_GetGenbankBlocks(const ncbi::CArgs&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_file_config.cpp:841:52: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blocks_arg, ",", vecOfBlockNames); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/format/flat_file_config.hpp:34, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_file_config.cpp:33: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ HREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/context.cpp -o context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xformat.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -C edit -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/edit' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/demo/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/demo/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/edit/demo/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit TMPL=edit -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit TMPL=edit -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:172:44: warning: array subscript has type 'char' [-Wchar-subscripts] while (descr_insert_order[index] != 0) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:45: warning: array subscript has type 'char' [-Wchar-subscripts] if (descr_insert_order[index] >= size()) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (descr_insert_order[index] >= size()) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:175:52: warning: array subscript has type 'char' [-Wchar-subscripts] resize(descr_insert_order[index], kMax_Char); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:176:44: warning: array subscript has type 'char' [-Wchar-subscripts] at(descr_insert_order[index]) = index; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1717:71: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1719:74: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1742:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1744:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2604:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos >= start && pos < start + len) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2604:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos >= start && pos < start + len) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2808:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if (seg_start < cut_from) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2811:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if (seg_start >= cut_from && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'std::__cxx11::string ncbi::objects::edit::GetTargetedLocusNameConsensus(const string&, const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:3310:38: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(tls1, " ", tokens1); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:3312:38: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(tls2, " ", tokens2); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::__cxx11::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] remove_trailingX); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/promote.cpp:52:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/util/sequence.hpp:911:17: note: declared here static void TranslateCdregion(string& prot, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp: In static member function 'static std::vector > ncbi::objects::CAutoDefFeatureClause_Base::GetMiscRNAElements(const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp:1771:59: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(comment, ",", parts, NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/autodef.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp: In static member function 'static std::vector > ncbi::objects::CAutoDefFeatureClause_Base::GetTrnaIntergenicSpacerClausePhrases(const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp:1927:59: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(comment, ",", parts, NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/autodef.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp: In static member function 'static std::vector > ncbi::objects::CAutoDefFeatureClause_Base::GetFeatureClausePhrases(std::__cxx11::string)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp:1975:42: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(comment, ",", elements); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/autodef.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp: In static member function 'static ncbi::objects::CAutoDefFeatureClause_Base* ncbi::objects::CAutoDefFeatureClause_Base::ClauseFromPhrase(const string&, ncbi::objects::CBioseq_Handle, const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, bool, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp:2013:33: warning: unused variable 'clause' [-Wunused-variable] CAutoDefFeatureClause_Base *clause = NULL; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_mod_combo.cpp: In static member function 'static bool ncbi::objects::CAutoDefModifierCombo::x_AddMinicircle(std::__cxx11::string&, const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_mod_combo.cpp:780:42: warning: 'static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(note_text, ";", tokens); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/seq/Seq_descr.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_mod_combo.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/string_constraint.cpp: In member function 'bool ncbi::objects::edit::CStringConstraint::DoesTextMatch(const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/string_constraint.cpp:133:52: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(match, ",; ", tokens); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/string_constraint.cpp:32: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:85:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:99:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:164:87: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:178:87: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp: In function 'void ncbi::{anonymous}::xLinkCDSmRNAbyLabelAndLocation(ncbi::objects::CSeq_annot_Base::C_Data::TFtable&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:135:13: warning: unused variable 'best_fit_size' [-Wunused-variable] int best_fit_size = -1; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustProteinFeaturePartialsToMatchCDS(ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_feat&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:409:19: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:34:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:409:19: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:34:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:409:63: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:34:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:482:27: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:482:27: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:482:82: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:488:9: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:488:9: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:488:75: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:548:5: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:449:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:548:5: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:449:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:548:56: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp:449:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/capitalization_string.cpp: In function 'void ncbi::objects::edit::FixCapitalizationInString(ncbi::objects::CSeq_entry_Handle, std::__cxx11::string&, ncbi::objects::edit::ECapChange)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/capitalization_string.cpp:655:53: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str, " \t\r\n", words); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/capitalization_string.cpp:33: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/capitalization_string.cpp: In function 'void ncbi::objects::edit::CapitalizeAfterApostrophe(std::__cxx11::string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/capitalization_string.cpp:882:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rslt[0] != start) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/capitalization_string.cpp: In function 'void ncbi::objects::edit::FixAffiliationShortWordsInElement(std::__cxx11::string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/capitalization_string.cpp:921:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rslt[0] != start) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/capitalization_string.cpp: In function 'void ncbi::objects::edit::FixOrdinalNumbers(std::__cxx11::string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/capitalization_string.cpp:948:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rslt[0] != start) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp: In member function 'bool ncbi::objects::edit::CLocationEditPolicy::ApplyPolicyToFeature(ncbi::objects::CSeq_feat&, ncbi::objects::CScope&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:546:19: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:546:19: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:546:59: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp: In function 'bool ncbi::objects::edit::ApplyPolicyToFeature(const ncbi::objects::edit::CLocationEditPolicy&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:769:38: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/cds_fix.hpp:65:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:769:38: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/cds_fix.hpp:65:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:769:69: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/cds_fix.hpp:65:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:770:17: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(*new_feat, scope.GetBioseqHandle(new_feat->GetLocation()).GetSeq_entry_Handle()); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/cds_fix.hpp:64:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:770:17: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(*new_feat, scope.GetBioseqHandle(new_feat->GetLocation()).GetSeq_entry_Handle()); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/cds_fix.hpp:64:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:770:117: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(*new_feat, scope.GetBioseqHandle(new_feat->GetLocation()).GetSeq_entry_Handle()); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/cds_fix.hpp:64:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh); ^ gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/capitalization_string.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_source_group.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_source_desc.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_mod_combo.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_available_modifier.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/gene_utils.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/promote.cpp -o promote.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_available_modifier.cpp -o autodef_available_modifier.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef.cpp -o autodef.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_feature_clause.cpp -o autodef_feature_clause.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_mod_combo.cpp -o autodef_mod_combo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_source_desc.cpp -o autodef_source_desc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_source_group.cpp -o autodef_source_group.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/autodef_options.cpp -o autodef_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/capitalization_string.cpp -o capitalization_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5./wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/gaps_edit.cpp: In member function 'ncbi::CRef ncbi::objects::CGapsEditor::CreateGap(ncbi::objects::CBioseq&, ncbi::TSeqPos, ncbi::TSeqPos)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/gaps_edit.cpp:231:31: warning: unused variable 'lit' [-Wunused-variable] CDelta_seq::TLiteral& lit = seq->SetLiteral(); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/rna_edit.cpp:258:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int j = i + 1; j < spans.size(); j++) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objtools/edit/parse_text_options.hpp:34, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/parse_text_options.cpp:33: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ 0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_available_modifier.o autodef.o autodef_feature_clause_base.o autodef_feature_clause.o autodef_mod_combo.o autodef_source_desc.o autodef_source_group.o autodef_options.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o capitalization_string.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/edit/demo' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/edit/demo' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -C validator -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/validator' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/validator' /usr/local/bin/gmake -C asniotest -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/asniotest' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/asniotest' /usr/local/bin/gmake -C align -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/align' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/align' /usr/local/bin/gmake -C seqmasks_io -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -C eutils -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/eutils' /usr/local/bin/gmake -C align_format -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format TMPL=align_format -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format TMPL=align_format -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/showalign.cpp:4424:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/showalign.cpp:4424:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/aln_printer.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/format_flags.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.align_format.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -C snputil -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/snputil' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/snputil' /usr/local/bin/gmake -C uudutil -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/uudutil' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/uudutil' /usr/local/bin/gmake -C variation -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/variation' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/variation' /usr/local/bin/gmake -C writers -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/writers' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools/writers' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/objtools' /usr/local/bin/gmake -C ctools -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/ctools' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/ctools' /usr/local/bin/gmake -C sra -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/sra' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/sra' /usr/local/bin/gmake -C algo -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/sequence/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/sequence/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT sequence/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/sequence/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/align/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/align/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT align/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/align/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/structure/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/structure/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT structure/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/structure/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/ms/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/ms/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/ms/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT ms/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/ms/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/gnomon/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/gnomon/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT gnomon/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/gnomon/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/tree/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/tree/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT tree/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/tree/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/phy_tree/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/phy_tree/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT phy_tree/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/seqqa/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/seqqa/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT seqqa/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/seqqa/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/cobalt/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/cobalt/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT cobalt/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/cobalt/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/text/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/text/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT text/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/text/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/volume_merge/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/volume_merge/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT volume_merge/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/primer/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/primer/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT primer/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/primer/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/id_mapper/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/id_mapper/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile /usr/local/bin/gmake -C dustmask -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/dustmask/symdust.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -C winmask -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:49: warning: 'unit_size' may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ^ gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/nc/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^ bi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -C sequence -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/sequence' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/sequence' /usr/local/bin/gmake -C blast -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT dbindex_search/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT blast_sra_input/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile /usr/local/bin/gmake -C composition_adjustment -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^ gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -C core -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core TMPL=blast -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core TMPL=blast -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/jumper.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/boost_erf.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/index_ungapped.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/gencode_singleton.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/split_query.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_dynarray.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_sw.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_tune.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_query_info.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_program.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_posit.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_parameters.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/phi_lookup.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/phi_gapalign.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/phi_extend.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/pattern.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_encoding.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/ncbi_math.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/ncbi_std.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/matrix_freq_ratios.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/lookup_wrap.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/lookup_util.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/link_hsps.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/hspfilter_culling.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/hspfilter_besthit.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/hspfilter_collector.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/greedy_align.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/gapinfo.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_util.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_traceback.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_stat.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_setup.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_seqsrc.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_seg.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_psi_priv.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/na_ungapped.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_psi.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_options.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_message.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_nascan.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_nalookup.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_aascan.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_aalookup.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_lookup.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_kappa.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_itree.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_hspstream.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_hits.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_gapalign.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_filter.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_extend.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_engine.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/blast_diagnostics.c. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/aa_ungapped.c. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc 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-D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/jumper.c -o jumper.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.blast.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -C dbindex -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::__cxx11::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^ gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -C makeindex -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O main.o mkindex_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o makembindex strip makembindex /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/makembindex gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -C dbindex_search -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /usr/local/bin/gmake -C api -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api TMPL=xblast -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api TMPL=xblast -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/api' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_aux.cpp. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c Updating dependency information for .core_hspfilter_mapper.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c Updating dependency information for .core_jumper.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c Updating dependency information for .core_boost_erf.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c Updating dependency information for .core_blast_hspstream_mt_utils.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c Updating dependency information for .core_blast_traceback_mt_priv.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c Updating dependency information for .core_index_ungapped.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c Updating dependency information for .core_gencode_singleton.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c Updating dependency information for .core_split_query.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c Updating dependency information for .core_blast_dynarray.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c Updating dependency information for .core_blast_sw.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c Updating dependency information for .core_blast_tune.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c Updating dependency information for .core_blast_query_info.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c Updating dependency information for .core_blast_program.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c Updating dependency information for .core_blast_posit.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c Updating dependency information for .core_blast_parameters.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c Updating dependency information for .core_phi_lookup.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c Updating dependency information for .core_phi_gapalign.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c Updating dependency information for .core_phi_extend.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c Updating dependency information for .core_pattern.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c Updating dependency information for .core_blast_encoding.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c Updating dependency information for .core_ncbi_math.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c Updating dependency information for .core_ncbi_std.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c Updating dependency information for .core_matrix_freq_ratios.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c Updating dependency information for .core_lookup_wrap.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c Updating dependency information for .core_lookup_util.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c Updating dependency information for .core_link_hsps.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c Updating dependency information for .core_hspfilter_culling.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c Updating dependency information for .core_hspfilter_besthit.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c Updating dependency information for .core_hspfilter_collector.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c Updating dependency information for .core_greedy_align.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c Updating dependency information for .core_gapinfo.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c Updating dependency information for .core_blast_util.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c Updating dependency information for .core_blast_traceback.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c Updating dependency information for .core_blast_stat.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c Updating dependency information for .core_blast_setup.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c Updating dependency information for .core_blast_seqsrc.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c Updating dependency information for .core_blast_seg.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c Updating dependency information for .core_blast_psi_priv.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c Updating dependency information for .core_na_ungapped.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c Updating dependency information for .core_blast_psi.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c Updating dependency information for .core_blast_options.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c Updating dependency information for .core_blast_message.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c Updating dependency information for .core_blast_nascan.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c Updating dependency information for .core_blast_nalookup.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c Updating dependency information for .core_blast_aascan.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c Updating dependency information for .core_blast_aalookup.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c Updating dependency information for .core_blast_lookup.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c Updating dependency information for .core_blast_kappa.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c Updating dependency information for .core_blast_itree.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c Updating dependency information for .core_blast_hspstream.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c Updating dependency information for .core_blast_hits.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c Updating dependency information for .core_blast_gapalign.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c Updating dependency information for .core_blast_filter.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c Updating dependency information for .core_blast_extend.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c Updating dependency information for .core_blast_engine.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c Updating dependency information for .core_blast_diagnostics.c. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c Updating dependency information for .core_aa_ungapped.c. rm .core_blast_nascan.c .core_blast_diagnostics.c .core_ncbi_math.c .core_blast_sw.c .core_split_query.c .core_hspfilter_collector.c .core_na_ungapped.c .core_blast_traceback_mt_priv.c .core_jumper.c .core_blast_engine.c .core_blast_dynarray.c .core_blast_util.c .core_blast_psi.c .core_blast_posit.c .core_blast_setup.c .core_blast_hits.c .core_blast_traceback.c .core_matrix_freq_ratios.c .core_ncbi_std.c .core_phi_extend.c .core_link_hsps.c .core_phi_lookup.c .core_blast_message.c .core_blast_extend.c .core_blast_lookup.c .core_blast_kappa.c .core_phi_gapalign.c .core_blast_encoding.c .core_blast_gapalign.c .core_pattern.c .core_blast_tune.c .core_blast_query_info.c .core_blast_hspstream.c .core_blast_psi_priv.c .core_hspfilter_mapper.c .core_lookup_wrap.c .core_blast_filter.c .core_blast_aascan.c .core_index_ungapped.c .core_aa_ungapped.c .core_hspfilter_culling.c .core_gencode_singleton.c .core_blast_options.c .core_boost_erf.c .core_blast_seqsrc.c .core_blast_stat.c .core_blast_aalookup.c .core_blast_parameters.c .core_greedy_align.c .core_blast_itree.c .core_blast_hspstream_mt_utils.c .core_hspfilter_besthit.c .core_gapinfo.c .core_lookup_util.c .core_blast_seg.c .core_blast_nalookup.c .core_blast_program.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_aa_ungapped.c -o .core_aa_ungapped.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_diagnostics.c -o .core_blast_diagnostics.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_engine.c -o .core_blast_engine.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_extend.c -o .core_blast_extend.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_filter.c -o .core_blast_filter.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_gapalign.c -o .core_blast_gapalign.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_hits.c -o .core_blast_hits.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_hspstream.c -o .core_blast_hspstream.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_itree.c -o .core_blast_itree.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_kappa.c -o .core_blast_kappa.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_lookup.c -o .core_blast_lookup.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_aalookup.c -o .core_blast_aalookup.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_aascan.c -o .core_blast_aascan.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_nalookup.c -o .core_blast_nalookup.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_nascan.c -o .core_blast_nascan.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_message.c -o .core_blast_message.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_options.c -o .core_blast_options.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_psi.c -o .core_blast_psi.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_na_ungapped.c -o .core_na_ungapped.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_psi_priv.c -o .core_blast_psi_priv.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_seg.c -o .core_blast_seg.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_seqsrc.c -o .core_blast_seqsrc.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_setup.c -o .core_blast_setup.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_stat.c -o .core_blast_stat.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_traceback.c -o .core_blast_traceback.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_util.c -o .core_blast_util.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_gapinfo.c -o .core_gapinfo.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_greedy_align.c -o .core_greedy_align.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_hspfilter_collector.c -o .core_hspfilter_collector.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_hspfilter_culling.c -o .core_hspfilter_culling.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_link_hsps.c -o .core_link_hsps.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_lookup_util.c -o .core_lookup_util.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_lookup_wrap.c -o .core_lookup_wrap.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_ncbi_std.c -o .core_ncbi_std.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_ncbi_math.c -o .core_ncbi_math.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_encoding.c -o .core_blast_encoding.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_pattern.c -o .core_pattern.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_phi_extend.c -o .core_phi_extend.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_phi_gapalign.c -o .core_phi_gapalign.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_phi_lookup.c -o .core_phi_lookup.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_parameters.c -o .core_blast_parameters.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_posit.c -o .core_blast_posit.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_program.c -o .core_blast_program.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:99:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:105:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_query_info.c -o .core_blast_query_info.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_tune.c -o .core_blast_tune.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_sw.c -o .core_blast_sw.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_dynarray.c -o .core_blast_dynarray.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_split_query.c -o .core_split_query.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_gencode_singleton.c -o .core_gencode_singleton.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_index_ungapped.c -o .core_index_ungapped.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_boost_erf.c -o .core_boost_erf.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_jumper.c -o .core_jumper.o echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (k < m_Msa->dimensions->query_length && ^ blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-bla/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seedtop.cpp: In member function 'void ncbi::blast::CSeedTop::x_ParsePattern()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seedtop.cpp:66:56: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(NStr::ToUpper(m_Pattern), "-", units); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/seedtop.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^ st-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/local_search.cpp -o local_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xblast.dep rm .core_blast_itree.c .core_blast_nascan.c .core_hspfilter_collector.c .core_hspfilter_culling.c .core_blast_engine.c .core_blast_encoding.c .core_blast_setup.c .core_blast_traceback_mt_priv.c .core_lookup_wrap.c .core_blast_aascan.c .core_boost_erf.c .core_phi_extend.c .core_hspfilter_besthit.c .core_phi_gapalign.c .core_pattern.c .core_blast_tune.c .core_blast_query_info.c .core_blast_psi_priv.c .core_gapinfo.c .core_link_hsps.c .core_blast_seqsrc.c .core_blast_diagnostics.c .core_blast_lookup.c .core_blast_filter.c .core_blast_options.c .core_lookup_util.c .core_blast_stat.c .core_blast_parameters.c .core_greedy_align.c .core_blast_hspstream_mt_utils.c .core_index_ungapped.c .core_blast_traceback.c .core_blast_seg.c .core_blast_hspstream.c .core_blast_program.c .core_ncbi_math.c .core_na_ungapped.c .core_blast_posit.c .core_jumper.c .core_blast_psi.c .core_phi_lookup.c .core_blast_dynarray.c .core_blast_hits.c .core_blast_gapalign.c .core_gencode_singleton.c .core_matrix_freq_ratios.c .core_split_query.c .core_blast_message.c .core_blast_extend.c .core_ncbi_std.c .core_blast_kappa.c .core_hspfilter_mapper.c .core_blast_nalookup.c .core_blast_sw.c .core_aa_ungapped.c .core_blast_aalookup.c .core_blast_util.c gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -C format -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format TMPL=xblastformat -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format TMPL=xblastformat -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:86: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/tempstr.hpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/object_manager.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbimisc.hpp:1216:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::__cxx11::string&, std::__cxx11::string&, bool, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:89: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/tempstr.hpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/objmgr/object_manager.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbimisc.hpp:1216:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blast_format.cpp:49:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blast_format.cpp:51:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blast_format.cpp: In member function 'void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blast_format.cpp:505:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -C blastinput -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o blast_asn1_input.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.blastinput.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -C blast_sra_input -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /usr/local/bin/gmake -C igblast -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/igblast TMPL=igblast -w export-headers gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/igblast TMPL=igblast -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/igblast/igblast.cpp: In constructor 'ncbi::blast::CIgAnnotationInfo::CIgAnnotationInfo(ncbi::CConstRef&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/igblast/igblast.cpp:92:65: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/igblast/igblast.cpp:116:65: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/igblast/igblast.cpp: In member function 'void ncbi::blast::CIgBlast::x_ScreenV(ncbi::CRef&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/igblast/igblast.cpp:138:73: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((*it)->GetAlignLength() - (*it)->GetTotalGapCount(0) < m_IgOptions->m_MinVLength){ ^ gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/igblast/igblast.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.igblast.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -C gumbel_params -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /usr/local/bin/gmake -C unit_tests -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' /usr/local/bin/gmake -C blast_format -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /usr/local/bin/gmake -C blastdb -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /usr/local/bin/gmake -C seqdb_reader -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /usr/local/bin/gmake -C api -w all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w mark-as-disabled gmake[8]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[8]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w mark-as-disabled gmake[8]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[8]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/blast' /usr/local/bin/gmake -C segmask -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/segmask/segmask.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -C align -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/align' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/align' /usr/local/bin/gmake -C structure -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/structure' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/structure' /usr/local/bin/gmake -C ms -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/ms' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/ms' /usr/local/bin/gmake -C gnomon -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/gnomon' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/gnomon' /usr/local/bin/gmake -C tree -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/tree' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/tree' /usr/local/bin/gmake -C phy_tree -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/phy_tree' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/phy_tree' /usr/local/bin/gmake -C seqqa -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/seqqa' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/seqqa' /usr/local/bin/gmake -C cobalt -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/cobalt' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/cobalt' /usr/local/bin/gmake -C text -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/text' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/text' /usr/local/bin/gmake -C volume_merge -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/volume_merge' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/volume_merge' /usr/local/bin/gmake -C primer -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/primer' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/primer' /usr/local/bin/gmake -C id_mapper -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/algo' /usr/local/bin/gmake -C misc -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/clog/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/clog/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT clog/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/clog/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/grid_cgi/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/grid_cgi/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT grid_cgi/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/xmlwrapp/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/xmlwrapp/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT xmlwrapp/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/eutils_client/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/eutils_client/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT eutils_client/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/hydra_client/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/hydra_client/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT hydra_client/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/discrepancy_report/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/discrepancy_report/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/discrepancy_report/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT discrepancy_report/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/discrepancy_report/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/discrepancy/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/discrepancy/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT discrepancy/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/xmlreaders/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/xmlreaders/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT xmlreaders/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/hgvs/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/hgvs/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT hgvs/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/hgvs/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/netstorage/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/netstorage/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT netstorage/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/netstorage/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/jsonwrapp/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/jsonwrapp/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/jsonwrapp/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT jsonwrapp/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/biosample_util/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/biosample_util/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT biosample_util/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/data_loaders_util/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/data_loaders_util/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT data_loaders_util/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/lapackwrapp/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/lapackwrapp/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT lapackwrapp/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/cgi_redirect/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/misc/cgi_redirect/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile /usr/local/bin/gmake -C third_party -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/third_party' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/third_party' /usr/local/bin/gmake -C third_party_static -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/third_party_static' NOTE: Skipping project third_party_static due to unmet requirements: -DLL gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[5]: Nothing to be done for 'mark-as-disabled_r'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/third_party_static' /usr/local/bin/gmake -C clog -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/clog' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/clog' /usr/local/bin/gmake -C grid_cgi -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/grid_cgi' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/grid_cgi' /usr/local/bin/gmake -C xmlwrapp -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/xmlwrapp' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/xmlwrapp' /usr/local/bin/gmake -C eutils_client -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/eutils_client' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/eutils_client' /usr/local/bin/gmake -C hydra_client -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/hydra_client' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/hydra_client' /usr/local/bin/gmake -C discrepancy_report -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/discrepancy_report' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/discrepancy_report' /usr/local/bin/gmake -C discrepancy -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/discrepancy' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/discrepancy' /usr/local/bin/gmake -C xmlreaders -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/xmlreaders' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/xmlreaders' /usr/local/bin/gmake -C hgvs -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/hgvs' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/hgvs' /usr/local/bin/gmake -C netstorage -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/netstorage' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/netstorage' /usr/local/bin/gmake -C jsonwrapp -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/jsonwrapp' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/jsonwrapp' /usr/local/bin/gmake -C biosample_util -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/biosample_util' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/biosample_util' /usr/local/bin/gmake -C data_loaders_util -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/data_loaders_util' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/data_loaders_util' /usr/local/bin/gmake -C lapackwrapp -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/lapackwrapp' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/lapackwrapp' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C cgi_redirect -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/misc' /usr/local/bin/gmake -C gui -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/gui' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/gui' /usr/local/bin/gmake -C app -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/asn2asn/Makefile.in` test -f 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/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT asn2fasta/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asn2fasta/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/asn2flat/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/asn2flat/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT asn2flat/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asn2flat/Makefile 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/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT ncbi_encrypt/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/ncbi_encrypt/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/ssub_fork/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/ssub_fork/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/ssub_fork/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT ssub_fork/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/ssub_fork/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/asn_cache/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/asn_cache/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/asn_cache/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT asn_cache/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asn_cache/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/magicblast/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/magicblast/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/magicblast/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT magicblast/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/magicblast/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/split_cache/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/split_cache/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/split_cache/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT split_cache/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/split_cache/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/wig2table/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/wig2table/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/wig2table/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT wig2table/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/wig2table/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/netcache/Makefile.in` test -f 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/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT rmblastn/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/rmblastn/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/dblb/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/dblb/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/dblb/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT dblb/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/dblb/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/tls/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/tls/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/tls/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT tls/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/tls/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/idfetch/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/idfetch/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/idfetch/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT idfetch/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/idfetch/Makefile /usr/local/bin/gmake -C asn2asn -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asn2asn' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asn2asn' /usr/local/bin/gmake -C asn2fasta -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asn2fasta' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asn2fasta' /usr/local/bin/gmake -C asn2flat -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asn2flat' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asn2flat' /usr/local/bin/gmake -C asnval -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asnval' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asnval' /usr/local/bin/gmake -C asn_cleanup -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asn_cleanup' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asn_cleanup' /usr/local/bin/gmake -C id1_fetch -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/id1_fetch' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/id1_fetch' /usr/local/bin/gmake -C blast -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/legacy_blast.pl /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/legacy_blast.pl /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/update_blastdb.pl /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/update_blastdb.pl /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast TMPL=blast_app_util -w export-headers gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast TMPL=blast_app_util -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/blast_app_util.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast TMPL=blastp -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/blastp_app.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastp_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o blastp strip blastp /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f blastp /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/blastp gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast TMPL=blastn -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/blastn_app.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastn_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o blastn strip blastn /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f blastn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/blastn gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast TMPL=blastx -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/blastx_app.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastx_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o blastx strip blastx /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f blastx /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/blastx gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast TMPL=tblastn -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/tblastn_app.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O tblastn_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o tblastn strip tblastn /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f tblastn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/tblastn gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast TMPL=tblastx -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/tblastx_app.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O tblastx_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o tblastx strip tblastx /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f tblastx /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/tblastx gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast TMPL=psiblast -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/psiblast_app.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O psiblast_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o psiblast strip psiblast /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f psiblast /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/psiblast gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast TMPL=rpsblast -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/rpsblast_app.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O rpsblast_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o rpsblast strip rpsblast /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f rpsblast /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/rpsblast gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast TMPL=rpstblastn -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/rpstblastn_app.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O rpstblastn_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o rpstblastn strip rpstblastn /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f rpstblastn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/rpstblastn gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast TMPL=blast_formatter -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/blast_formatter.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blast_formatter.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o blast_formatter strip blast_formatter /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f blast_formatter /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/blast_formatter gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast TMPL=deltablast -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/deltablast_app.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O deltablast_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o deltablast strip deltablast /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f deltablast /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/deltablast gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast TMPL=seedtop -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/seedtop_app.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O seedtop_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o seedtop strip seedtop /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f seedtop /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/seedtop gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -C convert_seq -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/convert_seq' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/convert_seq' /usr/local/bin/gmake -C nmer_repeats -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/nmer_repeats' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/nmer_repeats' /usr/local/bin/gmake -C objmgr -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/objmgr' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/objmgr' /usr/local/bin/gmake -C gi2taxid -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/gi2taxid' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/gi2taxid' /usr/local/bin/gmake -C netschedule -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/netschedule' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/netschedule' /usr/local/bin/gmake -C grid -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/grid' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/grid' /usr/local/bin/gmake -C netstorage -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/netstorage' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/netstorage' /usr/local/bin/gmake -C igblast -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/igblast' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/igblast' /usr/local/bin/gmake -C winmasker -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/winmasker -w all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/winmasker' /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/winmasker TMPL=winmasker -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/winmasker' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/winmasker/win_mask_app.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/winmasker/main.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O main.o win_mask_app.o win_mask_sdust_masker.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o windowmasker strip windowmasker /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f windowmasker /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/windowmasker gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -C dustmasker -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/dustmasker' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/dustmasker TMPL=dustmasker -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/dustmasker' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/dustmasker/main.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O main.o dust_mask_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o dustmasker strip dustmasker /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f dustmasker /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/dustmasker gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/dustmasker' /usr/local/bin/gmake -C segmasker -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/segmasker' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/segmasker TMPL=segmasker -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/segmasker' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/segmasker/segmasker.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O segmasker.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o segmasker strip segmasker /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/segmasker gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/segmasker' /usr/local/bin/gmake -C blastdb -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb TMPL=blastdbcmd -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdbcmd.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdbcmd.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o blastdbcmd strip blastdbcmd /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcmd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/blastdbcmd gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb TMPL=makeblastdb -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/masked_range_set.cpp. Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/makeblastdb.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O makeblastdb.o masked_range_set.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o makeblastdb strip makeblastdb /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f makeblastdb /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/makeblastdb gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdb_aliastool.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o blastdb_aliastool strip blastdb_aliastool /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/blastdb_aliastool gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb TMPL=blastdbcheck -w all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdbcheck.cpp: In member function 'int CAliasTest::DoTest(const string&, TSeen&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:720:72: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*line, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiapp.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdbcheck.cpp: In member function 'virtual bool CDbTest::Test(CTestActionList&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:941:54: warning: 'static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)' is deprecated [-Wdeprecated-declarations] NStr::Tokenize(m_Db, " ", dbs, NStr::eMergeDelims); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbiapp.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^ gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdbcheck.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdbcheck.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o blastdbcheck strip blastdbcheck /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcheck /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/blastdbcheck gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb TMPL=convert2blastmask -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/convert2blastmask.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O convert2blastmask.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lm -o convert2blastmask strip convert2blastmask /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f convert2blastmask /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/convert2blastmask gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb TMPL=blastdbcp -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdbcp.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdbcp.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -lm -o blastdbcp strip blastdbcp /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcp /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/blastdbcp gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb TMPL=makeprofiledb -w all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/makeprofiledb.cpp. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O makeprofiledb.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lsubmit-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lm -o makeprofiledb strip makeprofiledb /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin /bin/ln -f makeprofiledb /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/makeprofiledb gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -C vecscreen -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/vecscreen' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/vecscreen' /usr/local/bin/gmake -C agpconvert -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/agpconvert' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/agpconvert' /usr/local/bin/gmake -C id2_fetch -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/id2_fetch' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/id2_fetch' /usr/local/bin/gmake -C agp_validate -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/agp_validate' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/agp_validate' /usr/local/bin/gmake -C objextract -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/objextract' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/objextract' /usr/local/bin/gmake -C bdb_env_keeper -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/bdb_env_keeper' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/bdb_env_keeper' /usr/local/bin/gmake -C nw_aligner -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/nw_aligner' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/nw_aligner' /usr/local/bin/gmake -C speedtest -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/speedtest' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/speedtest' /usr/local/bin/gmake -C idmapper -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/idmapper' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/idmapper' /usr/local/bin/gmake -C formatguess -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/formatguess' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/formatguess' /usr/local/bin/gmake -C multireader -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/multireader' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/multireader' /usr/local/bin/gmake -C read_blast_result -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/read_blast_result' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/read_blast_result' /usr/local/bin/gmake -C splign -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/splign' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/splign' /usr/local/bin/gmake -C hfilter -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/hfilter' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/hfilter' /usr/local/bin/gmake -C annotwriter -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/annotwriter' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/annotwriter' /usr/local/bin/gmake -C compart -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/compart' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/compart' /usr/local/bin/gmake -C streamtest -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/streamtest' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/streamtest' /usr/local/bin/gmake -C lds2_indexer -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/lds2_indexer' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/lds2_indexer' /usr/local/bin/gmake -C discrepancy_report -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/discrepancy_report' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/discrepancy_report' /usr/local/bin/gmake -C biosample_chk -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/biosample_chk' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/biosample_chk' /usr/local/bin/gmake -C gap_stats -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/gap_stats' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/gap_stats' /usr/local/bin/gmake -C table2asn -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/table2asn' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/table2asn' /usr/local/bin/gmake -C srcchk -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/srcchk' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/srcchk' /usr/local/bin/gmake -C tableval -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/tableval' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/tableval' /usr/local/bin/gmake -C ncbi_encrypt -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/ncbi_encrypt' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/ncbi_encrypt' /usr/local/bin/gmake -C ssub_fork -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/ssub_fork' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/ssub_fork' /usr/local/bin/gmake -C asn_cache -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asn_cache' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/asn_cache' /usr/local/bin/gmake -C magicblast -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/magicblast' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/magicblast' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C split_cache -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/split_cache' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C wig2table -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/wig2table' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C netcache -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/netcache' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C rmblastn -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/rmblastn' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/rmblastn' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C dblb -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/dblb' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/dblb' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C tls -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/tls' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/tls' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C idfetch -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/idfetch' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app/idfetch' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/app' /usr/local/bin/gmake -C sample -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/sample' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/sample' /usr/local/bin/gmake -C internal -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/internal' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/internal' gmake[2]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build' gmake[1]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++' =========================================================================== =================================================== ===> ncbi-blast+-2.5.0_2 depends on package: p5-List-MoreUtils>=0 - not found ===> Installing existing package /packages/All/p5-List-MoreUtils-0.425.txz Installing p5-List-MoreUtils-0.425... `-- Installing p5-Exporter-Tiny-1.000000... `-- Extracting p5-Exporter-Tiny-1.000000: .......... done `-- Installing p5-List-MoreUtils-XS-0.423... | `-- Installing p5-XSLoader-0.24... | `-- Extracting p5-XSLoader-0.24: ....... done `-- Extracting p5-List-MoreUtils-XS-0.423: ....... done Extracting p5-List-MoreUtils-0.425: .......... done ===> ncbi-blast+-2.5.0_2 depends on package: p5-List-MoreUtils>=0 - found ===> Returning to build of ncbi-blast+-2.5.0_2 ===> ncbi-blast+-2.5.0_2 depends on file: /usr/local/bin/python2.7 - found ===> ncbi-blast+-2.5.0_2 depends on package: perl5>=5.24<5.25 - found =========================================================================== =================================================== ===> Staging for ncbi-blast+-2.5.0_2 ===> Generating temporary packing list gmake[1]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++' if test -d /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/gbench; then \ gmake -w install-gbench; \ else \ gmake -w install-toolkit; \ fi gmake[2]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++' /bin/rm -rf /wrkdirs/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ /usr/bin/install -c -d /wrkdirs/biology/ncbi-blast+/stage/usr/local/bin /wrkdirs/biology/ncbi-blast+/stage/usr/local/lib /wrkdirs/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ /usr/bin/install -c /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/bin/* /wrkdirs/biology/ncbi-blast+/stage/usr/local/bin /usr/bin/install -c -m 644 /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/*.* /wrkdirs/biology/ncbi-blast+/stage/usr/local/lib if test -d /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/ncbi; then \ cp -pPR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/ncbi /wrkdirs/biology/ncbi-blast+/stage/usr/local/lib/; \ fi rm -f /wrkdirs/biology/ncbi-blast+/stage/usr/local/lib/lib*-static.a cd /wrkdirs/biology/ncbi-blast+/stage/usr/local/lib && \ for x in *.a; do \ /bin/ln -s "$x" "`/usr/bin/basename \"$x\" .a`-static.a"; \ done cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/include && find * -name CVS -prune -o -print |\ cpio -pd /wrkdirs/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ 51112 blocks cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc && find * | cpio -pd /wrkdirs/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ 62 blocks gmake[2]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++' gmake[1]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.5.0+-src/c++' /usr/bin/strip /wrkdirs/biology/ncbi-blast+/stage/usr/local/lib/*.so ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for ncbi-blast+-2.5.0_2 file sizes/checksums [4008]: .......... done packing files [4008]: .......... done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for ncbi-blast+-2.5.0_2 build of biology/ncbi-blast+ ended at Tue Sep 19 01:16:34 PDT 2017 build time: 02:39:10