=> Building science/libghemical build started at Mon Sep 18 16:26:39 PDT 2017 port directory: /usr/ports/science/libghemical building for: DragonFly pkgbox64.dragonflybsd.org 4.9-DEVELOPMENT DragonFly v4.9.0.503.g33553-DEVELOPMENT #21: Fri Aug 4 16:51:32 PDT 2017 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: ports@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/Release48-default/ref/../03//usr/ports/science/libghemical/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400908 Jail OSVERSION: 400801 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release48-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=libghemical-3.0.0_10 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release48-default/ref/.p/pool MASTERNAME=Release48-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --enable-mpqc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" MAKE=gmake PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/science/libghemical XDG_CONFIG_HOME=/wrkdirs/science/libghemical HOME=/wrkdirs/science/libghemical TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/science/libghemical XDG_CONFIG_HOME=/wrkdirs/science/libghemical HOME=/wrkdirs/science/libghemical TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -lSCbasis -lSCcints -lSCclass -lSCcontainer -lSCdft -lSCgroup -lSCintv3 -lSCisosurf -lSCkeyval -lSCmbpt -lSCmbptr12 -lSCmisc -lSCmolecule -lSCoint3 -lSCoptimize -lSCoptions -lSCpsi -lSCref -lSCrender -lSCscf -lSCscmat -lSCsolvent -lSCstate -lSCsymmetry -lSCwfn -lgfortran -lpthread -lblas -llapack -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- LIBGHEMICAL_VERSION="3.0.0" OSREL=4.8 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/libghemical" EXAMPLESDIR="share/examples/libghemical" DATADIR="share/libghemical" WWWDIR="www/libghemical" ETCDIR="etc/libghemical" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libghemical DOCSDIR=/usr/local/share/doc/libghemical EXAMPLESDIR=/usr/local/share/examples/libghemical WWWDIR=/usr/local/www/libghemical ETCDIR=/usr/local/etc/libghemical --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> NOTICE: The libghemical port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port =========================================================================== =================================================== ===> libghemical-3.0.0_10 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz Installing pkg-1.10.1... Extracting pkg-1.10.1: .......... done ===> libghemical-3.0.0_10 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libghemical-3.0.0_10 =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The libghemical port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by libghemical-3.0.0_10 for building =========================================================================== =================================================== ===> NOTICE: The libghemical port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by libghemical-3.0.0_10 for building => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The libghemical port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by libghemical-3.0.0_10 for building ===> Extracting for libghemical-3.0.0_10 => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for libghemical-3.0.0_10 =========================================================================== =================================================== ===> libghemical-3.0.0_10 depends on executable: obabel - not found ===> Installing existing package /packages/All/openbabel-2.4.1.txz Installing openbabel-2.4.1... `-- Installing libxml2-2.9.4... `-- Extracting libxml2-2.9.4: .......... done `-- Installing python27-2.7.13_7... | `-- Installing expat-2.2.1... | `-- Extracting expat-2.2.1: .......... done | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.2.6... | | `-- Extracting indexinfo-0.2.6: .... done | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | `-- Installing libffi-3.2.1... | `-- Extracting libffi-3.2.1: .......... done | `-- Installing libressl-2.5.5... | `-- Extracting libressl-2.5.5: .......... done | `-- Installing ncurses-6.0_3... | `-- Extracting ncurses-6.0_3: .......... done | `-- Installing readline-7.0.3... | `-- Extracting readline-7.0.3: .......... done `-- Extracting python27-2.7.13_7: .......... done Extracting openbabel-2.4.1: .......... done Message from ncurses-6.0_3: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.13_7: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from openbabel-2.4.1: ===> NOTICE: The openbabel port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> libghemical-3.0.0_10 depends on executable: obabel - found ===> Returning to build of libghemical-3.0.0_10 ===> libghemical-3.0.0_10 depends on executable: intltool-update - not found ===> Installing existing package /packages/All/intltool-0.51.0_1.txz Installing intltool-0.51.0_1... `-- Installing p5-XML-Parser-2.44... | `-- Installing perl5-5.24.2... | `-- Extracting perl5-5.24.2: .......... done `-- Extracting p5-XML-Parser-2.44: .......... done Extracting intltool-0.51.0_1: .......... done Message from perl5-5.24.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> libghemical-3.0.0_10 depends on executable: intltool-update - found ===> Returning to build of libghemical-3.0.0_10 ===> libghemical-3.0.0_10 depends on executable: ld - found ===> libghemical-3.0.0_10 depends on executable: gfortran5 - not found ===> Installing existing package /packages/All/gcc5-5.4.0_3.txz Installing gcc5-5.4.0_3... `-- Installing binutils-2.28,1... `-- Extracting binutils-2.28,1: .......... done `-- Installing gmp-6.1.2... `-- Extracting gmp-6.1.2: .......... done `-- Installing mpc-1.0.3... | `-- Installing mpfr-3.1.5_1... | `-- Extracting mpfr-3.1.5_1: .......... done `-- Extracting mpc-1.0.3: ...... done Extracting gcc5-5.4.0_3: .......... done Message from gcc5-5.4.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> libghemical-3.0.0_10 depends on executable: gfortran5 - found ===> Returning to build of libghemical-3.0.0_10 ===> libghemical-3.0.0_10 depends on executable: msgfmt - not found ===> Installing existing package /packages/All/gettext-tools-0.19.8.1.txz Installing gettext-tools-0.19.8.1... Extracting gettext-tools-0.19.8.1: .......... done ===> libghemical-3.0.0_10 depends on executable: msgfmt - found ===> Returning to build of libghemical-3.0.0_10 ===> libghemical-3.0.0_10 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz Installing gmake-4.2.1_1... Extracting gmake-4.2.1_1: .......... done ===> libghemical-3.0.0_10 depends on executable: gmake - found ===> Returning to build of libghemical-3.0.0_10 ===> libghemical-3.0.0_10 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.3.7,1.txz Installing pkgconf-1.3.7,1... Extracting pkgconf-1.3.7,1: .......... done ===> libghemical-3.0.0_10 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of libghemical-3.0.0_10 ===> libghemical-3.0.0_10 depends on file: /usr/local/bin/as - found ===> libghemical-3.0.0_10 depends on file: /usr/local/lib/libGL.so - not found ===> Installing existing package /packages/All/mesa-libs-17.1.8.txz Installing mesa-libs-17.1.8... `-- Installing libX11-1.6.5,1... | `-- Installing kbproto-1.0.7... | `-- Extracting kbproto-1.0.7: .......... done | `-- Installing libXau-1.0.8_3... | | `-- Installing xproto-7.0.31... | | `-- Extracting xproto-7.0.31: .......... done | `-- Extracting libXau-1.0.8_3: .......... done | `-- Installing libXdmcp-1.1.2... | `-- Extracting libXdmcp-1.1.2: ......... done | `-- Installing libxcb-1.12_2... | | `-- Installing libpthread-stubs-0.4... | | `-- Extracting libpthread-stubs-0.4: . done | `-- Extracting libxcb-1.12_2: .......... done `-- Extracting libX11-1.6.5,1: .......... done `-- Installing libXdamage-1.1.4_3... | `-- Installing damageproto-1.2.1... | `-- Extracting damageproto-1.2.1: .... done | `-- Installing libXfixes-5.0.3... | | `-- Installing fixesproto-5.0... | | `-- Extracting fixesproto-5.0: .... done | `-- Extracting libXfixes-5.0.3: .......... done `-- Extracting libXdamage-1.1.4_3: ...... done `-- Installing libXext-1.3.3_1,1... | `-- Installing xextproto-7.3.0... | `-- Extracting xextproto-7.3.0: .......... done `-- Extracting libXext-1.3.3_1,1: .......... done `-- Installing libXxf86vm-1.1.4_1... | `-- Installing xf86vidmodeproto-2.3.1... | `-- Extracting xf86vidmodeproto-2.3.1: .... done `-- Extracting libXxf86vm-1.1.4_1: .......... done `-- Installing libdrm-2.4.83,1... | `-- Installing libpciaccess-0.13.5... | | `-- Installing pciids-20170727... | | `-- Extracting pciids-20170727: ..... done | `-- Extracting libpciaccess-0.13.5: ...... done `-- Extracting libdrm-2.4.83,1: .......... done `-- Installing libelf-0.8.13_2... `-- Extracting libelf-0.8.13_2: .......... done `-- Installing libxshmfence-1.2_2... `-- Extracting libxshmfence-1.2_2: ......... done Extracting mesa-libs-17.1.8: .......... done ===> libghemical-3.0.0_10 depends on file: /usr/local/lib/libGL.so - found ===> Returning to build of libghemical-3.0.0_10 ===> libghemical-3.0.0_10 depends on file: /usr/local/libdata/pkgconfig/glproto.pc - not found ===> Installing existing package /packages/All/glproto-1.4.17.txz Installing glproto-1.4.17... Extracting glproto-1.4.17: ...... done ===> libghemical-3.0.0_10 depends on file: /usr/local/libdata/pkgconfig/glproto.pc - found ===> Returning to build of libghemical-3.0.0_10 ===> libghemical-3.0.0_10 depends on file: /usr/local/libdata/pkgconfig/dri2proto.pc - not found ===> Installing existing package /packages/All/dri2proto-2.8.txz Installing dri2proto-2.8... Extracting dri2proto-2.8: .... done ===> libghemical-3.0.0_10 depends on file: /usr/local/libdata/pkgconfig/dri2proto.pc - found ===> Returning to build of libghemical-3.0.0_10 ===> libghemical-3.0.0_10 depends on file: /usr/local/libdata/pkgconfig/dri3proto.pc - not found ===> Installing existing package /packages/All/dri3proto-1.0.txz Installing dri3proto-1.0... Extracting dri3proto-1.0: ...... done ===> libghemical-3.0.0_10 depends on file: /usr/local/libdata/pkgconfig/dri3proto.pc - found ===> Returning to build of libghemical-3.0.0_10 =========================================================================== =================================================== ===> libghemical-3.0.0_10 depends on shared library: libmpqc.so - not found ===> Installing existing package /packages/All/mpqc-2.3.1_30.txz Installing mpqc-2.3.1_30... `-- Installing blas-3.5.0_3... `-- Extracting blas-3.5.0_3: ....... done `-- Installing lapack-3.5.0_3... `-- Extracting lapack-3.5.0_3: .......... done `-- Installing libint-1.1.6_5... `-- Extracting libint-1.1.6_5: .......... done Extracting mpqc-2.3.1_30: .......... done Message from libint-1.1.6_5: ===> NOTICE: The libint port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from mpqc-2.3.1_30: ===> NOTICE: The mpqc port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> libghemical-3.0.0_10 depends on shared library: libmpqc.so - found (/usr/local/lib/libmpqc.so) ===> Returning to build of libghemical-3.0.0_10 ===> libghemical-3.0.0_10 depends on shared library: libf2c.so - not found ===> Installing existing package /packages/All/f2c-20060810_5.txz Installing f2c-20060810_5... Extracting f2c-20060810_5: .......... done ===> libghemical-3.0.0_10 depends on shared library: libf2c.so - found (/usr/local/lib/libf2c.so) ===> Returning to build of libghemical-3.0.0_10 ===> libghemical-3.0.0_10 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) =========================================================================== =================================================== ===> Configuring for libghemical-3.0.0_10 configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking build system type... x86_64-portbld-dragonfly4.8 checking host system type... x86_64-portbld-dragonfly4.8 checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by gmake... GNU checking dependency style of cc... gcc3 checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking how to run the C preprocessor... cpp checking how to run the C++ preprocessor... c++ -E checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for ar... /usr/local/bin/ar checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from cc object... ok checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether c++ accepts -g... (cached) yes checking dependency style of c++... (cached) gcc3 checking how to run the C++ preprocessor... c++ -E checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly4.8 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by c++... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly4.8 ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/local/bin/ar checking for sh... /bin/sh checking whether gmake sets $(MAKE)... (cached) yes checking pkg-config is at least version 0.9.0... yes checking whether NLS is requested... yes checking for intltool >= 0.40.0... 0.51.0 found checking for intltool-update... /usr/local/bin/intltool-update checking for intltool-merge... /usr/local/bin/intltool-merge checking for intltool-extract... /usr/local/bin/intltool-extract checking for xgettext... /usr/local/bin/xgettext checking for msgmerge... /usr/local/bin/msgmerge checking for msgfmt... /usr/local/bin/msgfmt checking for gmsgfmt... /usr/local/bin/msgfmt checking for perl... /usr/local/bin/perl checking for perl >= 5.8.1... 5.24.2 checking for XML::Parser... ok checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking for LC_MESSAGES... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking for ngettext in libc... no checking for bindtextdomain in -lintl... yes checking for ngettext in -lintl... yes checking for dgettext in -lintl... yes checking for bind_textdomain_codeset... yes checking for msgfmt... (cached) /usr/local/bin/msgfmt checking for dcgettext... yes checking if msgfmt accepts -c... yes checking for gmsgfmt... (cached) /usr/local/bin/msgfmt checking for xgettext... (cached) /usr/local/bin/xgettext checking whether build environment is sane... yes checking for acos in -lm... yes checking for main in -lblas... yes checking for main in -llapack... yes checking for sc-config... /usr/local/bin/sc-config checking SC - version... yes checking GL/gl.h usability... yes checking GL/gl.h presence... yes checking for GL/gl.h... yes checking for cc option to accept ISO C99... none needed checking for cc option to accept ISO Standard C... (cached) none needed checking for inline... inline checking for an ANSI C-conforming const... yes checking for ANSI C header files... (cached) yes configure: build options: ^^^^^^^^^^^^^^ enable MPQC : yes enable MOPAC7 : no configure: creating ./config.status config.status: creating libghemical.pc config.status: creating Makefile config.status: creating bin/Makefile config.status: creating bin/amber/Makefile config.status: creating bin/builder/Makefile config.status: creating bin/param_mm/Makefile config.status: creating bin/param_mm/default/Makefile config.status: creating bin/param_mm/prmfit/Makefile config.status: creating bin/param_mm/tripos52/Makefile config.status: creating bin/param_sf/Makefile config.status: creating bin/param_sf/default/Makefile config.status: creating po/Makefile.in config.status: creating src/Makefile config.status: creating src/libghemicalconfig.h config.status: creating src/libghemical-features.h config.status: executing src/libghemicalconfig2.h commands config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing stamp.h commands config.status: executing po/stamp-it commands =========================================================================== =================================================== ===> Building for libghemical-3.0.0_10 gmake[1]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0' Making all in src gmake[2]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/src' gmake all-am gmake[3]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -I/usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -I/usr/local/include -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c -o atom.lo atom.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -I/usr/local/include 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-I/usr/local/include -I/usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -I/usr/local/include -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT sasaeval.lo -MD -MP -MF .deps/sasaeval.Tpo -c sasaeval.cpp -fPIC -DPIC -o .libs/sasaeval.o mv -f .deps/moldyn.Tpo .deps/moldyn.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -I/usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -I/usr/local/include -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT resonance.lo -MD -MP -MF .deps/resonance.Tpo -c -o resonance.lo resonance.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -I/usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -I/usr/local/include -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT resonance.lo -MD -MP -MF .deps/resonance.Tpo -c resonance.cpp -fPIC -DPIC -o .libs/resonance.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -I/usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -I/usr/local/include -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT resonance.lo -MD -MP -MF .deps/resonance.Tpo -c resonance.cpp -o resonance.o >/dev/null 2>&1 mv -f .deps/resonance.Tpo .deps/resonance.Plo mv -f .deps/pop_ana.Tpo .deps/pop_ana.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -I/usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -I/usr/local/include -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT eng1_sf.lo -MD -MP -MF .deps/eng1_sf.Tpo -c eng1_sf.cpp -o eng1_sf.o >/dev/null 2>&1 mv -f .deps/search.Tpo .deps/search.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -I/usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -I/usr/local/include -I/usr/local/include -I/usr/local/include -pipe -O2 -fno-strict-aliasing -MT sasaeval.lo -MD -MP -MF .deps/sasaeval.Tpo -c sasaeval.cpp -o sasaeval.o >/dev/null 2>&1 mv -f .deps/sasaeval.Tpo .deps/sasaeval.Plo mv -f .deps/eng1_sf.Tpo .deps/eng1_sf.Plo /bin/sh ../libtool --tag=CXX --mode=link c++ -pipe -O2 -fno-strict-aliasing -version-info 5:1:0 -L/usr/local/lib -lSCbasis -lSCcints -lSCclass -lSCcontainer -lSCdft -lSCgroup -lSCintv3 -lSCisosurf -lSCkeyval -lSCmbpt -lSCmbptr12 -lSCmisc -lSCmolecule -lSCoint3 -lSCoptimize -lSCoptions -lSCpsi -lSCref -lSCrender -lSCscf -lSCscmat -lSCsolvent -lSCstate -lSCsymmetry -lSCwfn -lgfortran -lpthread -lblas -llapack -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -o libghemical.la -rpath /usr/local/lib atom.lo bond.lo constraint.lo model.lo engine.lo typerule.lo utility.lo chn_info.lo seqbuild.lo mfinder.lo eng1_qm.lo eng1_qm_mpqc.lo eng1_qm_mopac.lo eng1_mm.lo eng1_mm_tripos52.lo tab_mm_tripos52.lo eng1_mm_default.lo tab_mm_default.lo eng1_mm_prmfit.lo tab_mm_prmfit.lo eng1_sf.lo eng1_sf_ua.lo eng1_sf_cg.lo eng2_qm_mm.lo notice.lo conjgrad.lo intcrd.lo search.lo geomopt.lo moldyn.lo pop_ana.lo sasaeval.lo resonance.lo -llapack -lblas -lm -L/usr/local/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -lderiv -lr12 -lint -lfl -lm -ldl -pthread -lblas -L/usr/local/lib -L/usr/local/lib/gcc5 -L/usr/local/bin -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0 -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../.. -lgfortran -lm -lquadmath -llapack -lblas -L/usr/local/lib -L/usr/local/lib/gcc5 -L/usr/local/bin -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0 -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../.. -lgfortran -lm -lquadmath libtool: link: c++ -shared -nostdlib /usr/lib/crti.o /usr/lib/gcc50/crtbeginS.o .libs/atom.o .libs/bond.o .libs/constraint.o .libs/model.o .libs/engine.o .libs/typerule.o .libs/utility.o .libs/chn_info.o .libs/seqbuild.o .libs/mfinder.o .libs/eng1_qm.o .libs/eng1_qm_mpqc.o .libs/eng1_qm_mopac.o .libs/eng1_mm.o .libs/eng1_mm_tripos52.o .libs/tab_mm_tripos52.o .libs/eng1_mm_default.o .libs/tab_mm_default.o .libs/eng1_mm_prmfit.o .libs/tab_mm_prmfit.o .libs/eng1_sf.o .libs/eng1_sf_ua.o .libs/eng1_sf_cg.o .libs/eng2_qm_mm.o .libs/notice.o .libs/conjgrad.o .libs/intcrd.o .libs/search.o .libs/geomopt.o .libs/moldyn.o .libs/pop_ana.o .libs/sasaeval.o .libs/resonance.o -L/usr/local/lib -lSCbasis -lSCcints -lSCclass -lSCcontainer -lSCdft -lSCgroup -lSCintv3 -lSCisosurf -lSCkeyval -lSCmbpt -lSCmbptr12 -lSCmisc -lSCmolecule -lSCoint3 -lSCoptimize -lSCoptions -lSCpsi -lSCref -lSCrender -lSCscf -lSCscmat -lSCsolvent -lSCstate -lSCsymmetry -lSCwfn -lpthread -L/usr/local/lib/gcc5 -lderiv -lr12 -lint -lfl -ldl -L/usr/local/bin -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0 -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.8/5.4.0/../../.. -llapack -lblas -lgfortran -lquadmath -L/usr/lib/gcc50 -lstdc++ -lm -lc -lgcc -lgcc_pic /usr/lib/gcc50/crtendS.o /usr/lib/crtn.o -Wl,-rpath=/usr/local/lib/gcc5 -B/usr/local/bin -Wl,-rpath=/usr/local/lib/gcc5 -B/usr/local/bin -pthread -pthread -Wl,-soname -Wl,libghemical.so.5 -o .libs/libghemical.so.5.0.1 libtool: link: (cd ".libs" && rm -f "libghemical.so.5" && ln -s "libghemical.so.5.0.1" "libghemical.so.5") libtool: link: (cd ".libs" && rm -f "libghemical.so" && ln -s "libghemical.so.5.0.1" "libghemical.so") libtool: link: /usr/local/bin/ar cru .libs/libghemical.a atom.o bond.o constraint.o model.o engine.o typerule.o utility.o chn_info.o seqbuild.o mfinder.o eng1_qm.o eng1_qm_mpqc.o eng1_qm_mopac.o eng1_mm.o eng1_mm_tripos52.o tab_mm_tripos52.o eng1_mm_default.o tab_mm_default.o eng1_mm_prmfit.o tab_mm_prmfit.o eng1_sf.o eng1_sf_ua.o eng1_sf_cg.o eng2_qm_mm.o notice.o conjgrad.o intcrd.o search.o geomopt.o moldyn.o pop_ana.o sasaeval.o resonance.o /usr/local/bin/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: /usr/local/bin/ranlib .libs/libghemical.a libtool: link: ( cd ".libs" && rm -f "libghemical.la" && ln -s "../libghemical.la" "libghemical.la" ) gmake[3]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/src' gmake[2]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/src' Making all in bin gmake[2]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin' Making all in amber gmake[3]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/amber' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/amber' Making all in builder gmake[3]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/builder' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/builder' Making all in param_mm gmake[3]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm' Making all in default gmake[4]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/default' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/default' Making all in prmfit gmake[4]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' Making all in tripos52 gmake[4]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[4]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[4]: Nothing to be done for 'all-am'. gmake[4]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[3]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm' Making all in param_sf gmake[3]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf' Making all in default gmake[4]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[4]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[4]: Nothing to be done for 'all-am'. gmake[4]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[3]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[3]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin' gmake[3]: Nothing to be done for 'all-am'. gmake[3]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin' gmake[2]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin' Making all in po gmake[2]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/po' file=`echo de | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file de.po file=`echo fi | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file fi.po file=`echo mk | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file mk.po file=`echo pt_BR | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file pt_BR.po file=`echo ru | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file ru.po file=`echo sq | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file sq.po gmake[2]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/po' gmake[2]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0' gmake[2]: Nothing to be done for 'all-am'. gmake[2]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0' gmake[1]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0' =========================================================================== =================================================== ===> libghemical-3.0.0_10 depends on executable: gfortran5 - found ===> libghemical-3.0.0_10 depends on file: /usr/local/lib/libGL.so - found =========================================================================== =================================================== ===> Staging for libghemical-3.0.0_10 ===> Generating temporary packing list gmake[1]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0' gmake INSTALL_PROGRAM="/bin/sh /wrkdirs/science/libghemical/libghemical-3.0.0/install-sh -c -s" \ install_sh_PROGRAM="/bin/sh /wrkdirs/science/libghemical/libghemical-3.0.0/install-sh -c -s" INSTALL_STRIP_FLAG=-s \ `test -z 'strip' || \ echo "INSTALL_PROGRAM_ENV=STRIPPROG='strip'"` install gmake[2]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0' Making install in src gmake[3]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/src' gmake[4]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/src' test -z "/usr/local/lib" || /bin/mkdir -p "/wrkdirs/science/libghemical/stage/usr/local/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c -s libghemical.la '/wrkdirs/science/libghemical/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libghemical.so.5.0.1 /wrkdirs/science/libghemical/stage/usr/local/lib/libghemical.so.5.0.1 libtool: install: strip --strip-unneeded /wrkdirs/science/libghemical/stage/usr/local/lib/libghemical.so.5.0.1 libtool: install: (cd /wrkdirs/science/libghemical/stage/usr/local/lib && { ln -s -f libghemical.so.5.0.1 libghemical.so.5 || { rm -f libghemical.so.5 && ln -s libghemical.so.5.0.1 libghemical.so.5; }; }) libtool: install: (cd /wrkdirs/science/libghemical/stage/usr/local/lib && { ln -s -f libghemical.so.5.0.1 libghemical.so || { rm -f libghemical.so && ln -s libghemical.so.5.0.1 libghemical.so; }; }) libtool: install: /usr/bin/install -c .libs/libghemical.lai /wrkdirs/science/libghemical/stage/usr/local/lib/libghemical.la libtool: install: /usr/bin/install -c .libs/libghemical.a /wrkdirs/science/libghemical/stage/usr/local/lib/libghemical.a libtool: install: strip --strip-debug /wrkdirs/science/libghemical/stage/usr/local/lib/libghemical.a libtool: install: chmod 644 /wrkdirs/science/libghemical/stage/usr/local/lib/libghemical.a libtool: install: /usr/local/bin/ranlib /wrkdirs/science/libghemical/stage/usr/local/lib/libghemical.a libtool: install: warning: remember to run `libtool --finish /usr/local/lib' test -z "/usr/local/include/ghemical" || /bin/mkdir -p "/wrkdirs/science/libghemical/stage/usr/local/include/ghemical" install -m 0644 libghemicaldefine.h libghemical-features.h local_i18n.h typedef.h v3d.h atom.h bond.h constraint.h model.h engine.h typerule.h utility.h chn_info.h seqbuild.h mfinder.h eng1_qm.h eng1_qm_mpqc.h eng1_qm_mopac.h eng1_mm.h eng1_mm_tripos52.h tab_mm_tripos52.h eng1_mm_default.h tab_mm_default.h eng1_mm_prmfit.h tab_mm_prmfit.h eng1_sf.h eng1_sf_ua.h eng1_sf_cg.h eng2_qm_mm.h notice.h conjgrad.h intcrd.h search.h geomopt.h moldyn.h pop_ana.h sasaeval.h resonance.h '/wrkdirs/science/libghemical/stage/usr/local/include/ghemical' gmake[4]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/src' gmake[3]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/src' Making install in bin gmake[3]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin' Making install in amber gmake[4]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/amber' gmake[5]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/amber' gmake[5]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/amber" || /bin/mkdir -p "/wrkdirs/science/libghemical/stage/usr/local/share/libghemical/3.0.0/amber" install -m 0644 all_amino94_MOD.in all_aminoct94.in all_aminont94.in all_nuc94_MOD.in parm99_frcmod_ff99SB.dat '/wrkdirs/science/libghemical/stage/usr/local/share/libghemical/3.0.0/amber' gmake[5]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/amber' gmake[4]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/amber' Making install in builder gmake[4]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/builder' gmake[5]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/builder' gmake[5]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/builder" || /bin/mkdir -p "/wrkdirs/science/libghemical/stage/usr/local/share/libghemical/3.0.0/builder" install -m 0644 amino.txt nucleic.txt '/wrkdirs/science/libghemical/stage/usr/local/share/libghemical/3.0.0/builder' gmake[5]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/builder' gmake[4]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/builder' Making install in param_mm gmake[4]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm' Making install in default gmake[5]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/default' gmake[6]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/default' gmake[6]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_mm/default" || /bin/mkdir -p "/wrkdirs/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/default" install -m 0644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/wrkdirs/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/default' gmake[6]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/default' gmake[5]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/default' Making install in prmfit gmake[5]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' gmake[6]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' gmake[6]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_mm/prmfit" || /bin/mkdir -p "/wrkdirs/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/prmfit" install -m 0644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/wrkdirs/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/prmfit' gmake[6]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' gmake[5]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' Making install in tripos52 gmake[5]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[6]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[6]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_mm/tripos52" || /bin/mkdir -p "/wrkdirs/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/tripos52" install -m 0644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt parameters5.txt '/wrkdirs/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/tripos52' gmake[6]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[5]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[5]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[6]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[6]: Nothing to be done for 'install-exec-am'. gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[5]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[4]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_mm' Making install in param_sf gmake[4]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf' Making install in default gmake[5]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[6]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[6]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_sf/default" || /bin/mkdir -p "/wrkdirs/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_sf/default" install -m 0644 loopdip.txt looptor.txt nonbonded.txt '/wrkdirs/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_sf/default' gmake[6]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[5]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[5]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[6]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[6]: Nothing to be done for 'install-exec-am'. gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[5]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[4]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[4]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin' gmake[5]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin' gmake[4]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin' gmake[3]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/bin' Making install in po gmake[3]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0/po' linguas="de fi mk pt_BR ru sq "; \ for lang in $linguas; do \ dir=/wrkdirs/science/libghemical/stage/usr/local/share/locale/$lang/LC_MESSAGES; \ /bin/sh /wrkdirs/science/libghemical/libghemical-3.0.0/install-sh -d $dir; \ if test -r $lang.gmo; then \ install -m 0644 $lang.gmo $dir/libghemical.mo; \ echo "installing $lang.gmo as $dir/libghemical.mo"; \ else \ install -m 0644 ./$lang.gmo $dir/libghemical.mo; \ echo "installing ./$lang.gmo as" \ "$dir/libghemical.mo"; \ fi; \ if test -r $lang.gmo.m; then \ install -m 0644 $lang.gmo.m $dir/libghemical.mo.m; \ echo "installing $lang.gmo.m as $dir/libghemical.mo.m"; \ else \ if test -r ./$lang.gmo.m ; then \ install -m 0644 ./$lang.gmo.m \ $dir/libghemical.mo.m; \ echo "installing ./$lang.gmo.m as" \ "$dir/libghemical.mo.m"; \ else \ true; \ fi; \ fi; \ done installing de.gmo as /wrkdirs/science/libghemical/stage/usr/local/share/locale/de/LC_MESSAGES/libghemical.mo installing fi.gmo as /wrkdirs/science/libghemical/stage/usr/local/share/locale/fi/LC_MESSAGES/libghemical.mo installing mk.gmo as /wrkdirs/science/libghemical/stage/usr/local/share/locale/mk/LC_MESSAGES/libghemical.mo installing pt_BR.gmo as /wrkdirs/science/libghemical/stage/usr/local/share/locale/pt_BR/LC_MESSAGES/libghemical.mo installing ru.gmo as /wrkdirs/science/libghemical/stage/usr/local/share/locale/ru/LC_MESSAGES/libghemical.mo installing sq.gmo as /wrkdirs/science/libghemical/stage/usr/local/share/locale/sq/LC_MESSAGES/libghemical.mo gmake[3]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0/po' gmake[3]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0' gmake[4]: Entering directory '/wrkdirs/science/libghemical/libghemical-3.0.0' gmake[4]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/libdata/pkgconfig" || /bin/mkdir -p "/wrkdirs/science/libghemical/stage/usr/local/libdata/pkgconfig" install -m 0644 libghemical.pc '/wrkdirs/science/libghemical/stage/usr/local/libdata/pkgconfig' gmake[4]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0' gmake[3]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0' gmake[2]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0' gmake[1]: Leaving directory '/wrkdirs/science/libghemical/libghemical-3.0.0' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for libghemical-3.0.0_10 file sizes/checksums [75]: . done packing files [75]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for libghemical-3.0.0_10 build of science/libghemical ended at Mon Sep 18 16:29:14 PDT 2017 build time: 00:02:35