=> Building biology/p5-Bio-Coordinate build started at Mon Mar 13 00:38:14 PDT 2017 port directory: /usr/ports/biology/p5-Bio-Coordinate building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.1380.gb4315f-DEVELOPMENT #0: Fri Mar 3 17:20:21 PST 2017 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: sunpoet@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/Release48-default/ref/../05//usr/ports/biology/p5-Bio-Coordinate/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400713 Jail OSVERSION: 400713 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release48-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=p5-Bio-Coordinate-1.007001 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release48-default/ref/.p/pool MASTERNAME=Release48-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- INSTALLDIRS="site" CC="cc" CCFLAGS="-pipe -O2 -fno-strict-aliasing" PREFIX="/usr/local" INSTALLPRIVLIB="/usr/local/lib" INSTALLARCHLIB="/usr/local/lib" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl XDG_DATA_HOME=/wrkdirs/biology/p5-Bio-Coordinate XDG_CONFIG_HOME=/wrkdirs/biology/p5-Bio-Coordinate HOME=/wrkdirs/biology/p5-Bio-Coordinate TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 PERL_EXTUTILS_AUTOINSTALL="--skipdeps" PERL_MM_USE_DEFAULT="YES" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/biology/p5-Bio-Coordinate XDG_CONFIG_HOME=/wrkdirs/biology/p5-Bio-Coordinate HOME=/wrkdirs/biology/p5-Bio-Coordinate TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PERL_VERSION=5.24.1 PERL_VER=5.24 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.24 PROFILE="@comment " DOCSDIR="share/doc/Bio-Coordinate" EXAMPLESDIR="share/examples/Bio-Coordinate" DATADIR="share/Bio-Coordinate" WWWDIR="www/Bio-Coordinate" ETCDIR="etc/Bio-Coordinate" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/Bio-Coordinate DOCSDIR=/usr/local/share/doc/Bio-Coordinate EXAMPLESDIR=/usr/local/share/examples/Bio-Coordinate WWWDIR=/usr/local/www/Bio-Coordinate ETCDIR=/usr/local/etc/Bio-Coordinate --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License ART10 GPLv1 accepted by the user =========================================================================== =================================================== ===> p5-Bio-Coordinate-1.007001 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.9.4_1.txz Installing pkg-1.9.4_1... Extracting pkg-1.9.4_1: .......... done ===> p5-Bio-Coordinate-1.007001 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of p5-Bio-Coordinate-1.007001 =========================================================================== =================================================== =========================================================================== =================================================== ===> License ART10 GPLv1 accepted by the user ===> Fetching all distfiles required by p5-Bio-Coordinate-1.007001 for building =========================================================================== =================================================== ===> License ART10 GPLv1 accepted by the user ===> Fetching all distfiles required by p5-Bio-Coordinate-1.007001 for building => SHA256 Checksum OK for Bio-Coordinate-1.007001.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License ART10 GPLv1 accepted by the user ===> Fetching all distfiles required by p5-Bio-Coordinate-1.007001 for building ===> Extracting for p5-Bio-Coordinate-1.007001 => SHA256 Checksum OK for Bio-Coordinate-1.007001.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for p5-Bio-Coordinate-1.007001 =========================================================================== =================================================== ===> p5-Bio-Coordinate-1.007001 depends on package: p5-BioPerl>=1.007000 - not found ===> Installing existing package /packages/All/p5-BioPerl-1.007001_1.txz Installing p5-BioPerl-1.007001_1... `-- Installing 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Extracting p5-Pegex-0.63: .......... done `-- Extracting p5-Inline-C-0.76_1: .......... done `-- Installing p5-YAML-1.14... `-- Extracting p5-YAML-1.14: .......... done `-- Installing p5-Set-Scalar-1.26_1... `-- Extracting p5-Set-Scalar-1.26_1: .......... done Extracting p5-BioPerl-1.007001_1: .......... done Message from perl5-5.24.1: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from ncurses-6.0_3: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from mysql56-client-5.6.35_2: * * * * * * * * * * * * * * * * * * * * * * * * Please be aware the database client is vulnerable to CVE-2015-3152 - SSL Downgrade aka "BACKRONYM". You may find more information at the following URL: http://www.vuxml.org/freebsd/36bd352d-299b-11e5-86ff-14dae9d210b8.html Although this database client is not listed as "affected", it is vulnerable and will not be receiving a patch. Please take note of this when deploying this software. * * * * * * * * * * * * * * * * * * * * * * * * Message from python27-2.7.13_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> p5-Bio-Coordinate-1.007001 depends on package: p5-BioPerl>=1.007000 - found ===> Returning to build of p5-Bio-Coordinate-1.007001 ===> p5-Bio-Coordinate-1.007001 depends on package: perl5>=5.24<5.25 - found =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for p5-Bio-Coordinate-1.007001 Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Coordinate Writing MYMETA.yml and MYMETA.json =========================================================================== =================================================== ===> Building for p5-Bio-Coordinate-1.007001 --- blib/lib/Bio/.exists --- --- blib/arch/.exists --- --- blib/lib/auto/Bio/Coordinate/.exists --- --- blib/arch/auto/Bio/Coordinate/.exists --- --- blib/bin/.exists --- --- blib/script/.exists --- --- blib/man1/.exists --- --- blib/man3/.exists --- --- subdirs --- --- dynamic --- --- pm_to_blib --- --- linkext --- --- pm_to_blib --- cp lib/Bio/Coordinate/Result/Gap.pm blib/lib/Bio/Coordinate/Result/Gap.pm cp lib/Bio/Coordinate.pm blib/lib/Bio/Coordinate.pm cp lib/Bio/Coordinate/Graph.pm blib/lib/Bio/Coordinate/Graph.pm cp lib/Bio/Coordinate/Result/Match.pm blib/lib/Bio/Coordinate/Result/Match.pm cp lib/Bio/Coordinate/GeneMapper.pm blib/lib/Bio/Coordinate/GeneMapper.pm cp lib/Bio/Coordinate/MapperI.pm blib/lib/Bio/Coordinate/MapperI.pm cp lib/Bio/Coordinate/ResultI.pm blib/lib/Bio/Coordinate/ResultI.pm cp lib/Bio/Coordinate/Collection.pm blib/lib/Bio/Coordinate/Collection.pm cp lib/Bio/Coordinate/Result.pm blib/lib/Bio/Coordinate/Result.pm cp lib/Bio/Coordinate/Pair.pm blib/lib/Bio/Coordinate/Pair.pm cp lib/Bio/Coordinate/Chain.pm blib/lib/Bio/Coordinate/Chain.pm cp lib/Bio/Coordinate/ExtrapolatingPair.pm blib/lib/Bio/Coordinate/ExtrapolatingPair.pm cp lib/Bio/Coordinate/Utils.pm blib/lib/Bio/Coordinate/Utils.pm --- blibdirs --- --- config --- --- pure_all --- --- manifypods --- Manifying 13 pod documents --- all --- =========================================================================== =================================================== ===> p5-Bio-Coordinate-1.007001 depends on package: p5-BioPerl>=1.007000 - found ===> p5-Bio-Coordinate-1.007001 depends on package: perl5>=5.24<5.25 - found =========================================================================== =================================================== ===> Staging for p5-Bio-Coordinate-1.007001 ===> Generating temporary packing list Manifying 13 pod documents Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate.pm Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Pair.pm Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Utils.pm Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Graph.pm Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/MapperI.pm Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Result.pm Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/GeneMapper.pm Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Collection.pm Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/ExtrapolatingPair.pm Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/ResultI.pm Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Chain.pm Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Result/Match.pm Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Result/Gap.pm Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Result::Match.3 Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Graph.3 Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate.3 Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Result::Gap.3 Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::GeneMapper.3 Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Collection.3 Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Utils.3 Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Pair.3 Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Chain.3 Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Result.3 Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::MapperI.3 Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::ExtrapolatingPair.3 Installing /wrkdirs/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::ResultI.3 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for p5-Bio-Coordinate-1.007001 file sizes/checksums [31]: . done packing files [31]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for p5-Bio-Coordinate-1.007001 build of biology/p5-Bio-Coordinate ended at Mon Mar 13 00:39:31 PDT 2017 build time: 00:01:17