=> Building biology/ncbi-toolkit build started at Mon Mar 13 03:40:27 PDT 2017 port directory: /usr/ports/biology/ncbi-toolkit building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.1380.gb4315f-DEVELOPMENT #0: Fri Mar 3 17:20:21 PST 2017 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: ports@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/Release48-default/ref/../01//usr/ports/biology/ncbi-toolkit/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400713 Jail OSVERSION: 400713 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release48-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=ncbi-toolkit-2012.06.20_1 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release48-default/ref/.p/pool MASTERNAME=Release48-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for ncbi-toolkit-2012.06.20_1: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/biology/ncbi-toolkit XDG_CONFIG_HOME=/wrkdirs/biology/ncbi-toolkit HOME=/wrkdirs/biology/ncbi-toolkit TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- MOTIFLIB="-L/usr/local/lib -lXm -lXp" XDG_DATA_HOME=/wrkdirs/biology/ncbi-toolkit XDG_CONFIG_HOME=/wrkdirs/biology/ncbi-toolkit HOME=/wrkdirs/biology/ncbi-toolkit TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-DLIBICONV_PLUG" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -DLIBICONV_PLUG" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/ncbi-toolkit" EXAMPLESDIR="share/examples/ncbi-toolkit" DATADIR="share/ncbi-toolkit" WWWDIR="www/ncbi-toolkit" ETCDIR="etc/ncbi-toolkit" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-toolkit DOCSDIR=/usr/local/share/doc/ncbi-toolkit EXAMPLESDIR=/usr/local/share/examples/ncbi-toolkit WWWDIR=/usr/local/www/ncbi-toolkit ETCDIR=/usr/local/etc/ncbi-toolkit --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> NOTICE: The ncbi-toolkit port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port =========================================================================== =================================================== ===> ncbi-toolkit-2012.06.20_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.9.4_1.txz Installing pkg-1.9.4_1... Extracting pkg-1.9.4_1: .......... done ===> ncbi-toolkit-2012.06.20_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-toolkit-2012.06.20_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The ncbi-toolkit port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by ncbi-toolkit-2012.06.20_1 for building =========================================================================== =================================================== ===> NOTICE: The ncbi-toolkit port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by ncbi-toolkit-2012.06.20_1 for building => SHA256 Checksum OK for ncbi-toolkit-2012.06.20/ncbi.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The ncbi-toolkit port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by ncbi-toolkit-2012.06.20_1 for building ===> Extracting for ncbi-toolkit-2012.06.20_1 ===> NOTICE: The ncbi-toolkit port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by ncbi-toolkit-2012.06.20_1 for building => SHA256 Checksum OK for ncbi-toolkit-2012.06.20/ncbi.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for ncbi-toolkit-2012.06.20_1 ===> Applying ports patches for ncbi-toolkit-2012.06.20_1 ===> Applying dragonfly patches for ncbi-toolkit-2012.06.20_1 ln -sv /wrkdirs/biology/ncbi-toolkit/ncbi/platform/freebsd.ncbi.mk /wrkdirs/biology/ncbi-toolkit/ncbi/platform/dragonfly.ncbi.mk /wrkdirs/biology/ncbi-toolkit/ncbi/platform/dragonfly.ncbi.mk -> /wrkdirs/biology/ncbi-toolkit/ncbi/platform/freebsd.ncbi.mk =========================================================================== =================================================== ===> ncbi-toolkit-2012.06.20_1 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - not found ===> Installing existing package /packages/All/libXpm-3.5.12.txz Installing libXpm-3.5.12... `-- Installing xproto-7.0.31... `-- Extracting xproto-7.0.31: .......... done `-- Installing libXt-1.1.5,1... | `-- Installing libSM-1.2.2_3,1... | | `-- Installing libICE-1.0.9_1,1... | | `-- Extracting libICE-1.0.9_1,1: .......... done | `-- Extracting libSM-1.2.2_3,1: .......... done | `-- Installing libX11-1.6.4,1... | | `-- Installing kbproto-1.0.7... | | `-- Extracting kbproto-1.0.7: .......... done | | `-- Installing libXdmcp-1.1.2... | | `-- Extracting libXdmcp-1.1.2: ......... done | | `-- Installing libxcb-1.12... | | `-- Installing libxml2-2.9.4... | | `-- Extracting libxml2-2.9.4: .......... done | | `-- Installing libpthread-stubs-0.3_6... | | `-- Extracting libpthread-stubs-0.3_6: ..... done | | `-- Installing libXau-1.0.8_3... | | `-- Extracting libXau-1.0.8_3: .......... done | | `-- Extracting libxcb-1.12: .......... done | `-- Extracting libX11-1.6.4,1: .......... done `-- Extracting libXt-1.1.5,1: .......... done `-- Installing libXext-1.3.3_1,1... | `-- Installing xextproto-7.3.0... | `-- Extracting xextproto-7.3.0: .......... done `-- Extracting libXext-1.3.3_1,1: .......... done `-- Installing gettext-runtime-0.19.8.1_1... | `-- Installing indexinfo-0.2.6... | `-- Extracting indexinfo-0.2.6: .... done `-- Extracting gettext-runtime-0.19.8.1_1: .......... done Extracting libXpm-3.5.12: .......... done ===> ncbi-toolkit-2012.06.20_1 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - found ===> Returning to build of ncbi-toolkit-2012.06.20_1 =========================================================================== =================================================== ===> ncbi-toolkit-2012.06.20_1 depends on shared library: libpng.so - not found ===> Installing existing package /packages/All/png-1.6.27.txz Installing png-1.6.27... Extracting png-1.6.27: .......... done ===> ncbi-toolkit-2012.06.20_1 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> Returning to build of ncbi-toolkit-2012.06.20_1 ===> ncbi-toolkit-2012.06.20_1 depends on shared library: libXm.so.4 - not found ===> Installing existing package /packages/All/open-motif-2.3.6_1.txz Installing open-motif-2.3.6_1... `-- Installing libXft-2.3.2_1... | `-- Installing fontconfig-2.12.1,1... | | `-- Installing expat-2.2.0_1... | | `-- Extracting expat-2.2.0_1: .......... done | | `-- Installing freetype2-2.6.3... | | `-- Extracting freetype2-2.6.3: .......... done | `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | `-- Installing libXrender-0.9.10... | | `-- Installing renderproto-0.11.1... | | `-- Extracting renderproto-0.11.1: .... done | `-- Extracting libXrender-0.9.10: .......... done `-- Extracting libXft-2.3.2_1: ......... done `-- Installing libXaw-1.0.13,2... | `-- Installing libXmu-1.1.2_3,1... | `-- Extracting libXmu-1.1.2_3,1: .......... done | `-- Installing printproto-1.0.5... | `-- Extracting printproto-1.0.5: .... done | `-- Installing libXp-1.0.3,1... | `-- Extracting libXp-1.0.3,1: .......... done `-- Extracting libXaw-1.0.13,2: .......... done `-- Installing xbitmaps-1.1.1... `-- Extracting xbitmaps-1.1.1: .......... done `-- Installing jpeg-turbo-1.5.1... `-- Extracting jpeg-turbo-1.5.1: .......... done Extracting open-motif-2.3.6_1: .......... done ===> ncbi-toolkit-2012.06.20_1 depends on shared library: libXm.so.4 - found (/usr/local/lib/libXm.so.4) ===> Returning to build of ncbi-toolkit-2012.06.20_1 =========================================================================== =================================================== ===> Configuring for ncbi-toolkit-2012.06.20_1 =========================================================================== =================================================== ===> Building for ncbi-toolkit-2012.06.20_1 cd /wrkdirs/biology/ncbi-toolkit; ./ncbi/make/makedis.csh Motif found at /usr/local/include/Xm platform is freebsd DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.1380.gb4315f-DEVELOPMENT #0: Fri Mar 3 17:20:21 PST 2017 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 Disabling assert(). BLAST version is 2.2.26 make CFLAGS1="-DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c " LDFLAGS1="-O" OTHERLIBS="-lm" SHELL="/bin/sh" LCL="fbd" RAN="ranlib" AR="ar" CC="cc" LIB30=libncbicn3d.a LIB28=libvibgif.a LIB4=libvibrant.a LIB20=libncbidesk.a LIB45=libddvlib.a VIBFLAG="-I/usr/local/include -L/usr/local/lib -DWIN_MOTIF" VIBLIBS="-L/usr/local/lib -lXm -lXp -lXpm -lXmu -lXt -lX11 -lXext" all chmod -R ug+rw,o+r . ../include ./ln-if-absent ../corelib/tsprintf.h ../include ./ln-if-absent ../corelib/gifgen.h ../include ./ln-if-absent ../corelib/ncbi*.h ../include ./ln-if-absent ../corelib/tree*.h ../include ./ln-if-absent ../corelib/regex.h ../include ./ln-if-absent ../corelib/matrix.h ../include ./ln-if-absent ../corelib/binary.h ../include ./ln-if-absent ../corelib/morefile/*.h ../include ./ln-if-absent ../corelib/morefile/*.c . ./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include ./ln-if-absent ../corelib/ncbilcl.fbd ../include/ncbilcl.h ./ln-if-absent ../corelib/*.c . ./ln-if-absent ../corelib/core*.h . ./ln-if-absent ../asnlib/*.h . rm -f ../include/asn.h mv asn.h ../include ./ln-if-absent ../asnlib/*.c . ./ln-if-absent ../connect/*.c . ./ln-if-absent ../connect/ncbi_ansi_ext.h . ./ln-if-absent ../connect/ncbi_assert.h . ./ln-if-absent ../connect/ncbi_priv.h . ./ln-if-absent ../connect/ncbi_comm.h . ./ln-if-absent ../connect/ncbi_config.h . ./ln-if-absent ../connect/ncbi_connssl.h . ./ln-if-absent ../connect/ncbi_lbsm.h . *** Error code 1 (ignored) ./ln-if-absent ../connect/ncbi_lbsm_ipc.h . *** Error code 1 (ignored) ./ln-if-absent ../connect/ncbi_host_infop.h . ./ln-if-absent ../connect/ncbi_server_infop.h . ./ln-if-absent ../connect/ncbi_servicep.h . ./ln-if-absent ../connect/ncbi_socketp.h . ./ln-if-absent ../connect/ncbi_dispd.h . ./ln-if-absent ../connect/ncbi_lbsmd.h . ./ln-if-absent ../connect/ncbi_local.h . ./ln-if-absent ../connect/ncbi_lb.h . ./ln-if-absent ../connect/ncbi_version.h . ./ln-if-absent ../connect/ncbi_base64.h . ./ln-if-absent ../connect/urlquery.h ../include mkdir ../include/connect chmod ug+rw,o+r ../include/connect cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect ./ln-if-absent ../util/tables/*.c . mkdir -p ../include/util/tables cp -fp ../util/tables/*.h ../include/util/tables ./ln-if-absent ../util/creaders/*.c . mkdir -p ../include/util/creaders cp -fp ../util/creaders/*.h ../include/util/creaders ./ln-if-absent ../ctools/*.c . ./ln-if-absent ../ctools/*.h . mkdir ../include/ctools chmod ug+rw,o+r ../include/ctools cp -fp ../ctools/*.h ../include/ctools ./ln-if-absent ../object/*.c . ./ln-if-absent ../object/*.h ../include ./ln-if-absent ../access/*.c . ./ln-if-absent ../access/*.h ../include ./ln-if-absent ../asnstat/*.h ../include ./ln-if-absent ../api/*.h ../include ./ln-if-absent ../api/*.c . ./ln-if-absent ../api/*.inc . ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../cdromlib/*.c . ./ln-if-absent ../vibrant/*.h ../include ./ln-if-absent ../vibrant/*.c . ./ln-if-absent ../desktop/*.h ../include ./ln-if-absent ../desktop/*.c . ./ln-if-absent ../biostruc/*.h ../include ./ln-if-absent ../biostruc/*.c . ./ln-if-absent ../biostruc/cdd/*.h ../include ./ln-if-absent ../biostruc/cdd/*.c . ./ln-if-absent ../biostruc/cn3d/*.h ../include ./ln-if-absent ../biostruc/cn3d/*.c . ./ln-if-absent ../tools/*.h ../include ./ln-if-absent ../tools/*.c . ./ln-if-absent ../cn3d/*.h ../include ./ln-if-absent ../cn3d/*.c . ./ln-if-absent ../gif/*.c . ./ln-if-absent ../gif/*.h ../include ./ln-if-absent ../ddv/*.h ../include ./ln-if-absent ../ddv/*.c . ./ln-if-absent ../regexp/*.c . ./ln-if-absent ../regexp/*.h ../include ./ln-if-absent ../internal/compr/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/compr/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/libindx/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/libindx/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/libpars/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/libpars/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ideogram/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ideogram/*.dat . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ideogram/ideochr*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ideogram/ideoorgs.h . *** Error code 1 (ignored) ./ln-if-absent ../internal/ccap/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ccap/*.dat . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ccap/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ncbidraw.c ncbidrwg.c ./ln-if-absent ncbithr.c ncbithrs.c ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id2arch/*.h ../include mkdir -p ../include/algo/blast/core ./ln-if-absent ../algo/blast/core/*.c . ./ln-if-absent ../algo/blast/core/*.h . ./ln-if-absent ../algo/blast/core/*.inl . cp -fp ../algo/blast/core/*.h ../include/algo/blast/core mkdir -p ../include/algo/blast/composition_adjustment ./ln-if-absent ../algo/blast/composition_adjustment/*.c . ./ln-if-absent ../algo/blast/composition_adjustment/*.h ../include cp -fp ../algo/blast/composition_adjustment/*.h ../include/algo/blast/composition_adjustment mkdir -p ../include/algo/blast/api ./ln-if-absent ../algo/blast/api/*.c . cp -fp ../algo/blast/api/*.h ../include/algo/blast/api chmod -R ug+rw,o+r . cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbithr.c cp -p ncbithr.o ../lib cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbimain.c ncbimain.c:81:1: warning: return type defaults to 'int' [-Wimplicit-int] main(int argc, char *argv[]) ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbibs.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF wwwutils.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbierr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbienv.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbifile.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbiprop.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbimath.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbimem.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbimisc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbimsg.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbistr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbisgml.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbitime.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbilang.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnbufo.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asndebin.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnenbin.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asngen.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnio.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnlex.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnlext.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnout.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnprint.c asnprint.c: In function 'AsnPrintTreeType': asnprint.c:2572:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] ptr = (Uint4)(atp); ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asntypes.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asngenob.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gifgen.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF togif.c cc -DNCBI_NOTHREADS_AVAIL -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbithrs.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c regex.c: In function 're_match_2': regex.c:3762:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] if ((int) old_regend[r] >= (int) regstart[r]) ^ regex.c:3762:54: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] if ((int) old_regend[r] >= (int) regstart[r]) ^ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (lowest_active_reg); \ ^ regex.c:3768:19: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p1 + mcnt, d, -2); ^ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (highest_active_reg); \ ^ regex.c:3768:19: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p1 + mcnt, d, -2); ^ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (lowest_active_reg); \ ^ regex.c:3915:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p + mcnt, NULL, -2); ^ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (highest_active_reg); \ ^ regex.c:3915:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p + mcnt, NULL, -2); ^ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (lowest_active_reg); \ ^ regex.c:3968:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p + mcnt, d, -2); ^ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (highest_active_reg); \ ^ regex.c:3968:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p + mcnt, d, -2); ^ regex.c:2509:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] high_reg = (unsigned) POP_FAILURE_ITEM (); \ ^ regex.c:4074:13: note: in expansion of macro 'POP_FAILURE_POINT' POP_FAILURE_POINT (sdummy, pdummy, ^ regex.c:2512:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] low_reg = (unsigned) POP_FAILURE_ITEM (); \ ^ regex.c:4074:13: note: in expansion of macro 'POP_FAILURE_POINT' POP_FAILURE_POINT (sdummy, pdummy, ^ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (lowest_active_reg); \ ^ regex.c:4107:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (0, 0, -2); ^ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (highest_active_reg); \ ^ regex.c:4107:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (0, 0, -2); ^ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (lowest_active_reg); \ ^ regex.c:4120:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (0, 0, -2); ^ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (highest_active_reg); \ ^ regex.c:4120:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (0, 0, -2); ^ regex.c:2509:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] high_reg = (unsigned) POP_FAILURE_ITEM (); \ ^ regex.c:4288:11: note: in expansion of macro 'POP_FAILURE_POINT' POP_FAILURE_POINT (d, p, ^ regex.c:2512:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] low_reg = (unsigned) POP_FAILURE_ITEM (); \ ^ regex.c:4288:11: note: in expansion of macro 'POP_FAILURE_POINT' POP_FAILURE_POINT (d, p, ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tsprintf.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbiargs.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tree.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF matrix.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_socket.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_buffer.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_types.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_core.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_core_c.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_util.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_priv.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_ansi_ext.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_connection.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_connector.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_connutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_file_connector.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_heapmgr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_http_connector.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_memory_connector.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_lbsmd_stub.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_host_info.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_server_info.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_service.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_version.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_service_connector.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_ftp_connector.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_dispd.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_lb.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_local.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_socket_connector.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urlquery.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF binary.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_sendmail.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_base64.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn_connection.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF raw_scoremat.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF drwnflpt.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF drwnfspc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF drwnmfls.c rm -f libncbi.a ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbi.a ../lib ranlib ../lib/libncbi.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objacces.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objalign.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objall.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objbibli.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objfeat.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objgen.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objloc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmedli.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objpub.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objres.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objscoremat.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objseq.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objblock.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objcode.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objsset.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objsub.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objprt.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objfdef.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objalignloc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objtable.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objpubme.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmdrs.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objproj.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objgbseq.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objtseq.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objinsdseq.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmacro.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objent2.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ent2api.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pmfapi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objtax3.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tax3api.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objegkludge.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objentgene.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmla2.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mla2api.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF qblastapi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vecscnapi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmim.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objvalid.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mimapi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cddapi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqport.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sequtil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prtutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF simple.c In file included from simple.c:69:0: ../include/all.h:7192:0: warning: "RNA_QUAL" redefined #define RNA_QUAL &at[2231] ^ ../include/all.h:5745:0: note: this is the location of the previous definition #define RNA_QUAL &at[1023] ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tofasta.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tofile.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tomedlin.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF valid.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF valapi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF alignmgr.c alignmgr.c: In function 'AlnMgrIndexParentSA': alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] sap->saip = (Pointer)AMAlignIndexFree(amaip); ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF aliparse.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF aliread.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF alignval.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sqnutil1.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sqnutil2.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sqnutil3.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sqnutil4.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF subutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF edutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff1.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff2.c asn2ff2.c:1358:8: warning: return type defaults to 'int' [-Wimplicit-int] static ChoicePID(SeqIdPtr sid) ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff3.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff4.c asn2ff4.c:1347:8: warning: return type defaults to 'int' [-Wimplicit-int] static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2) ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff5.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff6.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb1.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb2.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb3.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb4.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb5.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb6.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ftusrstr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gbfeat.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gbftglob.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gbparint.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF utilpars.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF utilpub.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ffprint.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF wprint.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF satutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqmgr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmgr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gather.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF accmmdbs.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF acccn3ds.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF lsqfetch.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF findrepl.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF codon.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF jzcoll.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF jzmisc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF maputil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mconsist.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF macroapi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salpedit.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salpstat.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salpacc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salprop.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salsap.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salstruc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salutil.c salutil.c: In function 'NoMoreSegGapForOneAlignment': salutil.c:3647:8: warning: implicit declaration of function 'AlnMgr2IndexSingleChildSeqAlign' [-Wimplicit-function-declaration] AlnMgr2IndexSingleChildSeqAlign(salp); /* make sure it's dense-seg */ ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF udvseq.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blocks.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pgppop.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF samutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvcolor.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF viewmgr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvcreate.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF jsavlt.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF needleman.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF txalign.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF fdlobj.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF alignmgr2.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF alnread.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF acerdapi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF aceread.c rm -f libncbiobj.a ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiobj.a ../lib ranlib ../lib/libncbiobj.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cdentrez.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cdromlib.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cdnewlib.c cdnewlib.c: In function 'cd3_CdDocAsnOpen': cdnewlib.c:1342:12: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (AsnIo*) CatastrophicFailure(1); ^ cdnewlib.c: In function 'UidIndex_ReadPage': cdnewlib.c:1937:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (long*)CatastrophicFailure(1); ^ cdnewlib.c:1945:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (long*)CatastrophicFailure(1); ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF casn.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cdconfig.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objentr.c rm -f libncbicdr.a ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbicdr.a ../lib ranlib ../lib/libncbicdr.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibbutns.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibextra.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibfiles.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibforms.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibgroup.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF viblists.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibmenus.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibprmpt.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibsbars.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibslate.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibtexts.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibutils.c vibutils.c: In function 'Nlm_VibMessageHook': vibutils.c:776:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] percent = (Nlm_Int4)Nlm_GetAppProperty( "VibrantMessageWidthMax" ); ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibwndws.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibmain.c vibmain.c:106:1: warning: return type defaults to 'int' [-Wimplicit-int] main (int argc, char *argv[]) ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbidraw.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF drawing.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mapping.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF picture.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF viewer.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF document.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF table.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF palette.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF diagnost.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF image.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pictur3d.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prim3d1.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prim3d2.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prim3d3.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prim3d4.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prim3d5.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF viewer3d.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibmouse.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF netscape.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF imagelst.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF treeview.c treeview.c: In function 'getNodeLength': treeview.c:177:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] length= (Int4)tree_getNode(cursor, TREE_NODE_FMT_DISTANCE, &size); ^ treeview.c: In function 'getIconId': treeview.c:187:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] a= (Int4) tree_getNode(cursor, TREE_NODE_FMT_ICON, &size); ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF shim3d.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF odlbox.c rm -f libvibrant.a ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libvibrant.a ../lib ranlib ../lib/libvibrant.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF accentr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF accutils.c rm -f libncbiacc.a ar cru libncbiacc.a accentr.o accutils.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiacc.a ../lib ranlib ../lib/libncbiacc.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF drawseq.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dotmatrx.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF fea2seg.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF fstyle.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF smdlg1.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF smdlg2.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF smdlg3.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF smtools.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF styleman.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF stylemui.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF glbpic.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF layout.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF saldist.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF saled.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salfiles.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salpanel.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salparam.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salsa.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqfltr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqgraph.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqgrphx.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqmtrx.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqpcc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqanal.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF aacomp.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqscrl.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF valdlg.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vsm.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vsmfile.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vsmutil.c vsmutil.c: In function 'ContinueProc': vsmutil.c:2157:23: warning: iteration 6u invokes undefined behavior [-Waggressive-loop-optimizations] vep->counts [i] = 0; ^ vsmutil.c:2156:5: note: containing loop for (i = SEV_NONE; i <= SEV_MAX; i++) { ^ vsmutil.c: In function 'RevalidateProc': vsmutil.c:2124:23: warning: iteration 6u invokes undefined behavior [-Waggressive-loop-optimizations] vep->counts [i] = 0; ^ vsmutil.c:2123:5: note: containing loop for (i = SEV_NONE; i <= SEV_MAX; i++) { ^ vsmutil.c: In function 'SetVerbosityAndRepopulate': vsmutil.c:2198:23: warning: iteration 6u invokes undefined behavior [-Waggressive-loop-optimizations] vep->counts [i] = 0; ^ vsmutil.c:2197:5: note: containing loop for (i = SEV_NONE; i <= SEV_MAX; i++) { ^ vsmutil.c: In function 'ClearValidateWindow': vsmutil.c:613:27: warning: iteration 6u invokes undefined behavior [-Waggressive-loop-optimizations] vep->counts [sev] = 0; ^ vsmutil.c:612:7: note: containing loop for (sev = SEV_NONE; sev <= SEV_MAX; sev++) { ^ vsmutil.c: In function 'CreateValidateWindowExExEx': vsmutil.c:2521:27: warning: iteration 6u invokes undefined behavior [-Waggressive-loop-optimizations] vep->counts [i] = 0; ^ vsmutil.c:2520:9: note: containing loop for (i = SEV_NONE; i <= SEV_MAX; i++) { ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF udvgraph.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF udvopen.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF udvpanel.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dotvibrant.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dlgutil1.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dlgutil2.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF e2trmlst.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF e2docsum.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2graphic.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF medview.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bspview.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gbfview.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gphview.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gphdraw.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gxydraw.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gtrdraw.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqpanel.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ingengraph.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ingenext.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ingenwin.c ingenwin.c: In function 'Ing_ShowComplexity': ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] while ((Boolean)(slp_feat=SeqLocFindNext(slp_dust,slp_feat))){ ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF macrodlg.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF biosrc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cdrgn.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF import.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pubdesc.c pubdesc.c: In function 'SetPubdescImportExportItems': pubdesc.c:2859:37: warning: comparison between pointer and integer &&& pfp->currentPage == 1) { ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqsub.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mapgene.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prtgene.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salogif.c rm -f libncbidesk.a ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o salogif.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbidesk.a ../lib ranlib ../lib/libncbidesk.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvclick.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvgraph.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvopen.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvpanel.c rm -f libddvlib.a ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libddvlib.a ../lib ranlib ../lib/libddvlib.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF corematx.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dvncode.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmmdb1.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmmdb2.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmmdb3.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objcn3d.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mmdbapi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mmdbapi1.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mmdbapi2.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mmdbapi3.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mmdbapi4.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mmdbentr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vastsubs.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prunebsc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objcdd.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cddutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cddposutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmime.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF strucapi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdalgs.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdatd.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdbwfi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdcpal.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdcpll.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdcprl.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdcxei.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrddgri.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdrsmp.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdsal0.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdsalr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdsalu.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdsgoi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdslo0.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdslor.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdslou.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdspci.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdspea.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdspel.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdspni.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdttb0.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdttbi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdzsc.c rm -f libncbimmdb.a ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbimmdb.a ../lib ranlib ../lib/libncbimmdb.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF csim.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF db_slist.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dust.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_dust.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF falign.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF g_any.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sim2.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sim3.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sim4.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF simutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF slist.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sec.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tfuns.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF toasn3.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF toporg.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pobutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF stsutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF suggadj.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF suggest.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF suggslp.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blastutl.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blastool.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blastconcat.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF splutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gapxdrop.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalg0.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalg1.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalg2.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalg3.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalg4.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalg5.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalgn.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blastkar.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF actutils.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF posit.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF lookup.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF readdb.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbisam.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbisort.c ncbisort.c: In function 'SORTFracCompare': ncbisort.c:692:12: warning: type defaults to 'int' in declaration of 'tmpa' [-Wimplicit-int] register tmpa = UCHAR(*a), tmpb = UCHAR(*b); ^ ncbisort.c:692:30: warning: type defaults to 'int' in declaration of 'tmpb' [-Wimplicit-int] register tmpa = UCHAR(*a), tmpb = UCHAR(*b); ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salign.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salptool.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkpcc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkptpf.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkepi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkfltr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkdust.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urksigu.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seg.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkbias.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkcnsrt.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urktree.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pseed3.c pseed3.c: In function 'seedParallelFill': pseed3.c:712:68: warning: iteration 100u invokes undefined behavior [-Waggressive-loop-optimizations] returnData->seedSearch->name_space[i] = seedSearch->name_space[i]; ^ pseed3.c:711:4: note: containing loop for( i = 0; i <= BUF_SIZE; i++) ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pattern1.c pattern1.c:744:8: warning: return type defaults to 'int' [-Wimplicit-int] static and(Int4 *result, Int4 *a, Int4 *b, patternSearchItems *patternSearch) ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF impatool.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF posit2.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mbalign.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vecscrn.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mblast.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF rpsutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF kappa.c kappa.c:2203:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] Kappa_SequenceGetRange, ^ kappa.c:2203:5: note: (near initialization for 'redo_align_callbacks.get_range') cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF xmlblast.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bxmlobj.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dotseq.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF spidey.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF motif.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blfmtutl.c rm -f libncbitool.a ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbitool.a ../lib ranlib ../lib/libncbitool.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF matrix_frequency_data.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF compo_mode_condition.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF composition_adjustment.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF nlm_linear_algebra.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF optimize_target_freq.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF compo_heap.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF smith_waterman.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF redo_alignment.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF unified_pvalues.c rm -f libblastcompadj.a ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libblastcompadj.a ../lib ranlib ../lib/libblastcompadj.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gdfontg.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gdfontmb.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gdfontt.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pictogif.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gdfontl.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gdfonts.c cc -DWIN_GIF -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbidrwg.c rm -f libvibgif.a ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libvibgif.a ../lib ranlib ../lib/libvibgif.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF algorend.c algorend.c: In function 'Cn3D_ColSeqCons': algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i); ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dmsel.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dopen.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dsave.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dxprt.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dwin.c cn3dwin.c: In function 'Cn3D_Menus': cn3dwin.c:2131:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] (Nlm_VoidPtr) i, NULL); ^ cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dentr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dmsg.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dmatn.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dmodl.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dshim.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dmesh.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dstyl.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqcons.c rm -f libncbicn3d.a ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbicn3d.a ../lib ranlib ../lib/libncbicn3d.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF chartables.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF get.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF maketables.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pcre.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pcreposix.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF study.c rm -f libregexp.a ar cru libregexp.a chartables.o get.o maketables.o pcre.o pcreposix.o study.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libregexp.a ../lib ranlib ../lib/libregexp.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF aa_ungapped.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_diagnostics.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_engine.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_extend.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_filter.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_gapalign.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_hits.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_itree.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_lookup.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_message.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_options.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_seg.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_seqsrc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_sw.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_setup.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_stat.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_traceback.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_util.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gapinfo.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF greedy_align.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF link_hsps.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF lookup_wrap.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF na_ungapped.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_math.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_std.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pattern.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF phi_extend.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF phi_lookup.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF lookup_util.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_encoding.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_psi.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_psi_priv.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_kappa.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF matrix_freq_ratios.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_hspstream.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_parameters.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_posit.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF phi_gapalign.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_program.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_query_info.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_tune.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_aalookup.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_nalookup.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_aascan.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_nascan.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_dynarray.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF split_query.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gencode_singleton.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF index_ungapped.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF hspfilter_collector.c rm -f libblast.a ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libblast.a ../lib ranlib ../lib/libblast.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_api.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_input.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_format.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_mtlock.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_options_api.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_prelim.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_returns.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_seq.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_seqalign.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_tabular.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF repeats_filter.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqsrc_multiseq.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqsrc_readdb.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF twoseq_api.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dust_filter.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_message_api.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF hspfilter_queue.c rm -f libblastapi.a ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libblastapi.a ../lib ranlib ../lib/libblastapi.a cc -o asntool -O -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -L../lib asntool.c asncode.c ../lib/libncbi.a -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cp -p asntool ../bin make -f makedemo.unx CFLAGS1="-DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c" LDFLAGS1="-O" SHELL="/bin/sh" OTHERLIBS="-lm" LCL="fbd" RAN="ranlib" AR="ar" CC="cc" ./ln-if-absent ../demo/*.* . ./ln-if-absent ../regexp/test/*.* . ./ln-if-absent ../regexp/demo/*.* . ./ln-if-absent ../internal/*.* . set: No match. *** Error code 1 (ignored) chmod -R ug+rw,o+r . cc -o testcore -O -I../include -L../lib testcore.c -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o makeset -O -I../include -L../lib makeset.c -lncbiobj -lncbi -lm In file included from makeset.c:9:0: ../include/all.h:7192:0: warning: "RNA_QUAL" redefined #define RNA_QUAL &at[2231] ^ ../include/all.h:5745:0: note: this is the location of the previous definition #define RNA_QUAL &at[1023] ^ ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o getmesh -O -I../include -L../lib getmesh.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o indexpub -O -I../include -L../lib indexpub.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o getpub -O -I../include -L../lib getpub.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o testobj -O -I../include -L../lib testobj.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o seqtest -O -I../include -L../lib seqtest.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o dosimple -O -I../include -L../lib dosimple.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o asn2ff -O -I../include -L../lib asn2ff.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o checksub -O -I../include -L../lib checksub.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o asndhuff -O -I../include -L../lib asndhuff.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o entrcmd -O -I../include -L../lib entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o errhdr -O -I../include -L../lib errhdr.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o cdscan -O -I../include -L../lib cdscan.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o findspl -O -I../include -L../lib findspl.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o ncbisort -O -I../include -L../lib sortcmd.c -lncbitool -lblastcompadj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o fa2htgs -O -I../include -L../lib fa2htgs.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o fastacmd -O -I../include -L../lib fastacmd.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o formatdb -O -I../include -L../lib formatdb.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o formatrpsdb -O -I../include -L../lib formatrpsdb.c -lblastapi -lncbitool -lblastcompadj -lblast -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o blastall -O -I../include -L../lib blastall.c -lblastapi -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o blastpgp -O -I../include -L../lib blastpgp.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o testval -O -I../include -L../lib testval.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o seedtop -O -I../include -L../lib seedtop.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o makemat -O -I../include -L../lib makemat.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o copymat -O -I../include -L../lib copymat.c -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o impala -O -I../include -L../lib profiles.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o megablast -O -I../include -L../lib megablast.c -lblastapi -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o vecscreen -O -I../include -L../lib vecscreen.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o gil2bin -O -I../include -L../lib gil2bin.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o blastclust -O -I../include -L../lib blastclust.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o rpsblast -O -I../include -L../lib rpsblast.c -lblastapi -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o asn2xml -O -I../include -L../lib asn2xml.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o debruijn -O -I../include -L../lib debruijn.c -lblast -lblastcompadj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o asn2idx -O -I../include -L../lib asn2idx.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o sortbyquote -O -I../include -L../lib sortbyquote.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o subfuse -O -I../include -L../lib subfuse.c -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o test_regexp -O -I../include -L../lib pcretest.c -lregexp cc -o demo_regexp -O -I../include -L../lib pcredemo.c -lregexp cc -o demo_regexp_grep -O -I../include -L../lib pcregrep.c -lregexp make -f makedemo.unx CFLAGS1="-DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c" LDFLAGS1="-O" SHELL="/bin/sh" OTHERLIBS="-lm" LCL="fbd" RAN="ranlib" AR="ar" CC="cc" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="-pthread" blastall blastpgp seedtop megablast rpsblast blastclust ./ln-if-absent ../demo/*.* . ./ln-if-absent ../regexp/test/*.* . ./ln-if-absent ../regexp/demo/*.* . ./ln-if-absent ../internal/*.* . set: No match. *** Error code 1 (ignored) chmod -R ug+rw,o+r . cc -o blastall -O -I../include -L../lib blastall.c ncbithr.o -lblastapi -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm -pthread ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o blastpgp -O -I../include -L../lib blastpgp.c ncbithr.o -lncbitool -lblastcompadj -lncbiobj -lncbi -lm -pthread ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o seedtop -O -I../include -L../lib seedtop.c ncbithr.o -lncbitool -lblastcompadj -lncbiobj -lncbi -lm -pthread ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o megablast -O -I../include -L../lib megablast.c ncbithr.o -lblastapi -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm -pthread ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o rpsblast -O -I../include -L../lib rpsblast.c ncbithr.o -lblastapi -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm -pthread ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o blastclust -O -I../include -L../lib blastclust.c ncbithr.o -lncbitool -lblastcompadj -lncbiobj -lncbi -lm -pthread ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() make -f makenet.unx CFLAGS1="-DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c " LDFLAGS1="-O" SHELL="/bin/sh" AR="ar" CC="cc" RAN="ranlib" OTHERLIBS="-lm" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="-pthread" NETENTREZVERSION="2.02c2ASN1SPEC6 " BLIB31=libvibnet.a VIBLIBS="-L/usr/local/lib -lXm -lXp -lXpm -lXmu -lXt -lX11 -lXext" OGLLIBS=" " VIBFLAG="-I/usr/local/include -L/usr/local/lib -DWIN_MOTIF" VIB="Psequin sbtedit Nentrez udv ddv blastcl3 taxblast idfetch bl2seq asn2gb tbl2asn gene2xml entrez2 gbseqget psiblast.REAL psiblast_cs.REAL blast.REAL blast_cs.REAL nph-viewgif.cgi wblast2.REAL wblast2_cs.REAL bl2bag.cgi " ./ln-if-absent ../connect/test/*.c . ./ln-if-absent ../network/entrez/client/*.h ../include ./ln-if-absent ../network/entrez/client/*.c . ./ln-if-absent ../network/medarch/client/*.h ../include ./ln-if-absent ../network/medarch/client/*.c . ./ln-if-absent ../network/taxonomy/client/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/taxonomy/client/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/taxon1/common/*.h ../include ./ln-if-absent ../network/taxon1/common/*.c . ./ln-if-absent ../network/taxon1/taxon2/*.h ../include ./ln-if-absent ../network/taxon1/taxon2/*.c . ./ln-if-absent ../network/id0arch/client/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/id0arch/client/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id1arch/*.c . ./ln-if-absent ../network/id2arch/*.h ../include ./ln-if-absent ../network/id2arch/*.c . ./ln-if-absent ../network/spell/client/*.h ../include ./ln-if-absent ../network/spell/client/*.c . ./ln-if-absent ../network/suggest/client/*.h ../include ./ln-if-absent ../network/suggest/client/*.c . ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/blast3/client/*.c . ./ln-if-absent ../tools/taxblast.h ../include ./ln-if-absent ../tools/taxblast.c . ./ln-if-absent /*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/misc/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/misc/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ssparse/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ssparse/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/libparsn/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/libparsn/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/www/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/www/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/query/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/query/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/nsclilib/*.c . ./ln-if-absent ../network/vibnet/*.c . ./ln-if-absent ../network/vibnet/*.h ../include ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../network/wwwblast/Src/*.c . ./ln-if-absent ../network/wwwblast/Src/*.h ../include ./ln-if-absent ../cdromlib/accentr.c . ./ln-if-absent ../cdromlib/accutils.c . ./ln-if-absent ../sequin/*.* . ./ln-if-absent ../demo/entrez.c . ./ln-if-absent ../demo/seqget.c . ./ln-if-absent ../demo/entrcmd.c . ./ln-if-absent ../demo/batch.c . ./ln-if-absent ../demo/qbatch.c . ./ln-if-absent ../demo/elecpcr.c . ./ln-if-absent ../demo/asn2fast.c . ./ln-if-absent ../demo/asn2asn.c . ./ln-if-absent ../demo/cleanasn.c . ./ln-if-absent ../demo/cspeedtest.c . ./ln-if-absent ../demo/sqn2agp.c . ./ln-if-absent ../demo/sugint.c . ./ln-if-absent ../demo/fetchent.c . ./ln-if-absent ../demo/udvmain.c . ./ln-if-absent ../demo/rtestval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asn2ff.c . ./ln-if-absent ../demo/asn2gb.c . ./ln-if-absent ../demo/asn2fsa.c . ./ln-if-absent ../demo/asn2all.c . ./ln-if-absent ../demo/gene2xml.c . ./ln-if-absent ../demo/asnval.c . ./ln-if-absent ../demo/asndisc.c . ./ln-if-absent ../demo/asnbarval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asnmacro.c . ./ln-if-absent ../demo/asnstrip.c . ./ln-if-absent ../demo/tbl2asn.c . ./ln-if-absent ../demo/raw2delt.c . ./ln-if-absent ../demo/flint.c . ./ln-if-absent ../demo/xlint.c . ./ln-if-absent ../demo/diffshift.c . ./ln-if-absent ../demo/gbseqget.c . ./ln-if-absent ../demo/insdseqget.c . ./ln-if-absent ../demo/nps2gps.c . ./ln-if-absent ../demo/testent2.c . ./ln-if-absent ../demo/trna2sap.c . ./ln-if-absent ../demo/trna2tbl.c . ./ln-if-absent ../demo/entrez2.c . ./ln-if-absent ../demo/condense.c . ./ln-if-absent ../demo/spideymain.c . ./ln-if-absent ../demo/dotmain.c . ./ln-if-absent ../demo/ingenmain.c . ./ln-if-absent ../demo/bl2seq.c . ./ln-if-absent ../demo/blastall.c . ./ln-if-absent ../demo/blast_driver.c . ./ln-if-absent ../demo/src_chk.c . ./ln-if-absent ../demo/tbl_chk.c . ./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c . ./ln-if-absent ../network/entrez/server/*.* . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/suggest/server/*.* . chmod -R ug+rw,o+r . cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c rm -f libnetcli.a ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libnetcli.a ../lib ranlib ../lib/libnetcli.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c rm -f libnetentr.a ar cru libnetentr.a netentr.o netlib.o objneten.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libnetentr.a ../lib ranlib ../lib/libnetentr.a ./ln-if-absent accentr.c Naccentr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c rm -f libncbiNacc.a ar cru libncbiNacc.a Naccentr.o accutils.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiNacc.a ../lib ranlib ../lib/libncbiNacc.a ./ln-if-absent accentr.c Caccentr.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c rm -f libncbiCacc.a ar cru libncbiCacc.a Caccentr.o accutils.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiCacc.a ../lib ranlib ../lib/libncbiCacc.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c rm -f libvibnet.a ar cru libvibnet.a netcnfg.o trmlst.o docsum.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libvibnet.a ../lib ranlib ../lib/libvibnet.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c rm -f libncbitxc2.a ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbitxc2.a ../lib ranlib ../lib/libncbitxc2.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c rm -f libncbiid1.a ar cru libncbiid1.a id1gen.o id1arch.o accid1.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiid1.a ../lib ranlib ../lib/libncbiid1.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c rm -f libnetblast.a ar cru libnetblast.a objblst3.o netblap3.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libnetblast.a ../lib ranlib ../lib/libnetblast.a cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c rm -f libncbimla.a ar cru libncbimla.a objmla.o medarch.o medutil.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbimla.a ../lib ranlib ../lib/libncbimla.a cc -o Psequin -I. -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequin10.c sequinx.c -lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lncbi -L/usr/local/lib -lXm -lXp -lXpm -lXmu -lXt -lX11 -lXext -lm -lXft -lpng -ljpeg sequin3.c: In function 'AddBlastTag': sequin3.c:18797:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] align_type = (Uint1) (Int4) gcp->userdata; ^ sequin3.c: In function 'CommonAddBlastToSeqAnnot': sequin3.c:18822:60: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] GatherItem (sel->entityID, sel->itemID, sel->itemtype, (Pointer) (Int4) align_type, AddBlastTag); ^ sequin9.c: In function 'UpdatePairToUpdateTitlesDialog': sequin9.c:14092:33: warning: large integer implicitly truncated to unsigned type [-Woverflow] PRINTID_REPORT, sizeof (id_txt) - 50); ^ ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() : Psequin cc -o sbtedit -I. -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sbtedit.c -lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lncbi -L/usr/local/lib -lXm -lXp -lXpm -lXmu -lXt -lX11 -lXext -lm -lXft -lpng -ljpeg ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() : sbtedit cc -o Nentrez -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF entrez.c -lncbiid1 -lvibnet -lncbicn3d -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib -lnetblast -lncbitool -lblastcompadj -lncbiNacc -lnetentr -lnetcli -lncbiacc -lvibrant -lncbicdr -lncbiobj -lncbi -L/usr/local/lib -lXm -lXp -lXpm -lXmu -lXt -lX11 -lXext -lm -lXft -lpng -ljpeg ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" udvmain.c cc -o udv -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF udvmain.o -lncbiid1 -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbitool -lblastcompadj -lncbiobj -lncbi -L/usr/local/lib -lXm -lXp -lXpm -lXmu -lXt -lX11 -lXext -lm -lXft -lpng -ljpeg ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -DNDEBUG -pipe -DLIBICONV_PLUG -O2 -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ddvmain.c ddvmain.c:147:13: warning: 'DDV_myargs' initialized and declared 'extern' extern Args DDV_myargs[NUMARGS] = { ^ cc -o ddv -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvmain.o -lncbiid1 -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbitool -lblastcompadj -lncbiobj -lncbi -L/usr/local/lib -lXm -lXp -lXpm -lXmu -lXt -lX11 -lXext -lm -lXft -lpng -ljpeg ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -g -o blastcl3 -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DBLAST_CS_API blastall.c -lblastapi -lblast -lnetblast -lncbitool -lblastcompadj -lnetcli -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -g -o taxblast -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF taxblast_main.c -lblastapi -lblast -lnetblast -lncbiid1 -lncbitxc2 -lncbitool -lblastcompadj -lnetcli -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -g -o idfetch -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF idfetch.c -lncbiid1 -lnetcli -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o bl2seq -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bl2seq.c -lblastapi -lblast -lncbitool -lblastcompadj -lncbiid1 -lnetcli -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -g -o asn2gb -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gb.c -lncbiid1 -lnetcli -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o tbl2asn -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tbl2asn.c -lncbitool -lblastcompadj -lncbiobj -lnetcli -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -g -o gene2xml -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gene2xml.c -lnetcli -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -g -o entrez2 -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF entrez2.c -lncbiid1 -lnetcli -lncbidesk -lblastapi -lblast -lncbimmdb -lncbitool -lblastcompadj -lncbiobj -lvibrant -lncbi -L/usr/local/lib -lXm -lXp -lXpm -lXmu -lXt -lX11 -lXext -lm -lXft -lpng -ljpeg ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() : entrez2 cc -g -o gbseqget -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gbseqget.c -lncbiid1 -lnetcli -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o psiblast.REAL -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF psiblast.c wwwbutl.c ncbithr.o -lncbidesk -lblastapi -lblast -lncbitool -lblastcompadj -lvibgif -lncbiobj -lncbi -lm -pthread psiblast.c: In function 'Nlm_Main': psiblast.c:248:5: warning: implicit declaration of function 'UseLocalAsnloadDataAndErrMsg' [-Wimplicit-function-declaration] UseLocalAsnloadDataAndErrMsg (); ^ psiblast.c:386:2: warning: implicit declaration of function 'PSIPrintOutput' [-Wimplicit-function-declaration] PSIPrintOutput(theInfo, print_data, BadSeqAlignments, ^ psiblast.c:390:2: warning: implicit declaration of function 'PHIPrintOutput' [-Wimplicit-function-declaration] PHIPrintOutput(theInfo, print_data, print_data->vnp, ethresh_old); ^ ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o psiblast_cs.REAL -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNCBI_ENTREZ_CLIENT psiblast.c wwwbutl.c ncbithr.o -lncbitxc2 -lncbiid1 -lnetblast -lnetcli -lncbidesk -lblastapi -lblast -lncbitool -lblastcompadj -lvibgif -lncbiobj -lncbi -lm -pthread psiblast.c: In function 'Nlm_Main': psiblast.c:248:5: warning: implicit declaration of function 'UseLocalAsnloadDataAndErrMsg' [-Wimplicit-function-declaration] UseLocalAsnloadDataAndErrMsg (); ^ psiblast.c:386:2: warning: implicit declaration of function 'PSIPrintOutput' [-Wimplicit-function-declaration] PSIPrintOutput(theInfo, print_data, BadSeqAlignments, ^ psiblast.c:390:2: warning: implicit declaration of function 'PHIPrintOutput' [-Wimplicit-function-declaration] PHIPrintOutput(theInfo, print_data, print_data->vnp, ethresh_old); ^ wwwbutl.c: In function 'AccessionToGi': wwwbutl.c:752:10: warning: implicit declaration of function 'ID1FindSeqId' [-Wimplicit-function-declaration] gi = ID1FindSeqId (sip); ^ wwwbutl.c: In function 'WWWCreateSearchOptions': wwwbutl.c:898:14: warning: implicit declaration of function 'ID1BioseqFetchEnable' [-Wimplicit-function-declaration] if (!ID1BioseqFetchEnable("web-blasts", TRUE)) { ^ wwwbutl.c:948:32: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] query_bsp->seq_data = BSNew(query_bsp->length); ^ wwwbutl.c:968:23: warning: passing argument 1 of 'Nlm_BSWrite' from incompatible pointer type [-Wincompatible-pointer-types] BSWrite(query_bsp->seq_data, buf, retval); ^ In file included from ../include/ncbi.h:63:0, from ../include/wwwblast.h:81, from wwwbutl.c:214: ../include/ncbibs.h:80:29: note: expected 'Nlm_ByteStorePtr {aka struct bytestore *}' but argument is of type 'SeqDataPtr {aka struct SeqData *}' NLM_EXTERN Nlm_Int4 LIBCALL Nlm_BSWrite PROTO((Nlm_ByteStorePtr bsp, Nlm_VoidPtr ptr, Nlm_Int4 len)); ^ wwwbutl.c:1019:9: warning: implicit declaration of function 'ID1BioseqFetchDisable' [-Wimplicit-function-declaration] ID1BioseqFetchDisable(); ^ wwwbutl.c:1389:17: warning: implicit declaration of function 'BLASTGetUidsFromQuery' [-Wimplicit-function-declaration] BLASTGetUidsFromQuery(chptr, &uids, theInfo->db_is_na, FALSE, 0); ^ ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o blast.REAL -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF wwwblast.c wwwbutl.c ncbithr.o -lncbidesk -lblastapi -lblast -lncbitool -lblastcompadj -lvibgif -lncbiobj -lncbi -lm -pthread wwwblast.c: In function 'Nlm_Main': wwwblast.c:1330:5: warning: implicit declaration of function 'UseLocalAsnloadDataAndErrMsg' [-Wimplicit-function-declaration] UseLocalAsnloadDataAndErrMsg (); ^ ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o blast_cs.REAL -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNCBI_ENTREZ_CLIENT wwwblast.c wwwbutl.c ncbithr.o -lncbitxc2 -lncbiid1 -lnetblast -lnetcli -lncbidesk -lblastapi -lblast -lncbitool -lblastcompadj -lvibgif -lncbiobj -lncbi -lm -pthread wwwblast.c: In function 'WWWBlastDoSearch': wwwblast.c:1231:17: warning: implicit declaration of function 'TXBHtmlReport' [-Wimplicit-function-declaration] TXBHtmlReport(seqalign, stdout, theInfo->query_is_na, ^ wwwblast.c: In function 'Nlm_Main': wwwblast.c:1330:5: warning: implicit declaration of function 'UseLocalAsnloadDataAndErrMsg' [-Wimplicit-function-declaration] UseLocalAsnloadDataAndErrMsg (); ^ wwwbutl.c: In function 'AccessionToGi': wwwbutl.c:752:10: warning: implicit declaration of function 'ID1FindSeqId' [-Wimplicit-function-declaration] gi = ID1FindSeqId (sip); ^ wwwbutl.c: In function 'WWWCreateSearchOptions': wwwbutl.c:898:14: warning: implicit declaration of function 'ID1BioseqFetchEnable' [-Wimplicit-function-declaration] if (!ID1BioseqFetchEnable("web-blasts", TRUE)) { ^ wwwbutl.c:948:32: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] query_bsp->seq_data = BSNew(query_bsp->length); ^ wwwbutl.c:968:23: warning: passing argument 1 of 'Nlm_BSWrite' from incompatible pointer type [-Wincompatible-pointer-types] BSWrite(query_bsp->seq_data, buf, retval); ^ In file included from ../include/ncbi.h:63:0, from ../include/wwwblast.h:81, from wwwbutl.c:214: ../include/ncbibs.h:80:29: note: expected 'Nlm_ByteStorePtr {aka struct bytestore *}' but argument is of type 'SeqDataPtr {aka struct SeqData *}' NLM_EXTERN Nlm_Int4 LIBCALL Nlm_BSWrite PROTO((Nlm_ByteStorePtr bsp, Nlm_VoidPtr ptr, Nlm_Int4 len)); ^ wwwbutl.c:1019:9: warning: implicit declaration of function 'ID1BioseqFetchDisable' [-Wimplicit-function-declaration] ID1BioseqFetchDisable(); ^ wwwbutl.c:1389:17: warning: implicit declaration of function 'BLASTGetUidsFromQuery' [-Wimplicit-function-declaration] BLASTGetUidsFromQuery(chptr, &uids, theInfo->db_is_na, FALSE, 0); ^ ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o nph-viewgif.cgi -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF viewgif.c viewgif.c: In function 'main': viewgif.c:85:9: warning: implicit declaration of function 'write' [-Wimplicit-function-declaration] write(1, tmp_buff, strlen(tmp_buff)); ^ cc -o wblast2.REAL -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DBL2SEQ_STANDALONE wblast2.c -lblastapi -lncbitool -lblastcompadj -lncbiobj -lblast -lncbi -lm wblast2.c: In function 'PrintOutScore': wblast2.c:1052:16: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] seq_data = q_bsp->seq_data; ^ wblast2.c:1057:26: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] q_bsp->seq_data = seq_data; ^ wblast2.c:1070:23: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] q_bsp->seq_data = seq_data; ^ wblast2.c: In function 'Nlm_Main': wblast2.c:3121:9: warning: implicit declaration of function 'BlastProgram2Number' [-Wimplicit-function-declaration] BlastProgram2Number(progname, &program_number); ^ ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o wblast2_cs.REAL -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNCBI_ENTREZ_CLIENT -DBL2SEQ_STANDALONE wblast2.c -lncbiid1 -lnetcli -lblastapi -lncbitool -lblastcompadj -lncbiobj -lblast -lncbi -lm wblast2.c: In function 'PrintOutScore': wblast2.c:1052:16: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] seq_data = q_bsp->seq_data; ^ wblast2.c:1057:26: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] q_bsp->seq_data = seq_data; ^ wblast2.c:1070:23: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] q_bsp->seq_data = seq_data; ^ wblast2.c: In function 'FindSeqByAccession': wblast2.c:1459:4: warning: implicit declaration of function 'ID1BioseqFetchEnable' [-Wimplicit-function-declaration] ID1BioseqFetchEnable ("wblast2", TRUE); ^ wblast2.c:1482:12: warning: implicit declaration of function 'ID1FindSeqId' [-Wimplicit-function-declaration] gi = ID1FindSeqId (sip); ^ wblast2.c:1535:11: warning: implicit declaration of function 'ID1BioseqFetchDisable' [-Wimplicit-function-declaration] ID1BioseqFetchDisable(); ^ wblast2.c:1573:17: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] old_seq_data = bsp->seq_data; ^ wblast2.c:1574:18: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] bsp->seq_data = BSNew(bsp->length); ^ wblast2.c:1582:15: warning: passing argument 1 of 'Nlm_BSWrite' from incompatible pointer type [-Wincompatible-pointer-types] BSWrite(bsp->seq_data, buf, retval); ^ In file included from ../include/ncbi.h:63:0, from wblast2.c:271: ../include/ncbibs.h:80:29: note: expected 'Nlm_ByteStorePtr {aka struct bytestore *}' but argument is of type 'SeqDataPtr {aka struct SeqData *}' NLM_EXTERN Nlm_Int4 LIBCALL Nlm_BSWrite PROTO((Nlm_ByteStorePtr bsp, Nlm_VoidPtr ptr, Nlm_Int4 len)); ^ wblast2.c: In function 'Nlm_Main': wblast2.c:3121:9: warning: implicit declaration of function 'BlastProgram2Number' [-Wimplicit-function-declaration] BlastProgram2Number(progname, &program_number); ^ ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() cc -o bl2bag.cgi -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bl2bag.c -lncbi -lm ../lib/libncbi.a(ncbifile.o):ncbifile.c:function Nlm_TmpNam: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() Put the date stamp to the file ../VERSION ********************************************************* *The new binaries are located in ./ncbi/build/ directory* ********************************************************* =========================================================================== =================================================== ===> ncbi-toolkit-2012.06.20_1 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - found =========================================================================== =================================================== ===> Staging for ncbi-toolkit-2012.06.20_1 ===> Generating temporary packing list (cd /wrkdirs/biology/ncbi-toolkit/ncbi/bin && install -s -m 555 bl2seq blastall blastcl3 blastclust blastpgp copymat fastacmd formatdb formatrpsdb impala makemat megablast rpsblast seedtop taxblast asn2ff asn2gb asn2idx asn2xml asndhuff asntool cdscan checksub debruijn demo_regexp demo_regexp_grep dosimple entrcmd errhdr fa2htgs findspl gene2xml getmesh getpub gil2bin idfetch indexpub makeset ncbisort seqtest tbl2asn vecscreen Nentrez Psequin ddv entrez2 sbtedit udv /wrkdirs/biology/ncbi-toolkit/stage/usr/local/bin) (cd /wrkdirs/biology/ncbi-toolkit/ncbi/lib && install -m 0644 *.a /wrkdirs/biology/ncbi-toolkit/stage/usr/local/lib/ncbi) (cd /wrkdirs/biology/ncbi-toolkit/ncbi/include && install -m 0644 *.h /wrkdirs/biology/ncbi-toolkit/stage/usr/local/include/ncbi) (cd /wrkdirs/biology/ncbi-toolkit/ncbi/include/connect && install -m 0644 *.h /wrkdirs/biology/ncbi-toolkit/stage/usr/local/include/ncbi/connect) (cd /wrkdirs/biology/ncbi-toolkit/ncbi/doc/man && install -m 444 Psequin.1 asn2ff.1 asn2idx.1 asn2xml.1 asndhuff.1 asntool.1 blast.1 blastclust.1 cdscan.1 checksub.1 copymat.1 ddv.1 debruijn.1 entrez2.1 errhdr.1 fa2htgs.1 fastacmd.1 findspl.1 formatdb.1 formatrpsdb.1 getmesh.1 getpub.1 gil2bin.1 idfetch.1 indexpub.1 makemat.1 taxblast.1 tbl2asn.1 udv.1 vecscreen.1 /wrkdirs/biology/ncbi-toolkit/stage/usr/local/man/man1) ln -s /usr/local/man/man1/blast.1.gz /wrkdirs/biology/ncbi-toolkit/stage/usr/local/man/man1/bl2seq.1.gz ln -s /usr/local/man/man1/blast.1.gz /wrkdirs/biology/ncbi-toolkit/stage/usr/local/man/man1/blastall.1.gz ln -s /usr/local/man/man1/blast.1.gz /wrkdirs/biology/ncbi-toolkit/stage/usr/local/man/man1/blastcl3.1.gz ln -s /usr/local/man/man1/blast.1.gz /wrkdirs/biology/ncbi-toolkit/stage/usr/local/man/man1/blastpgp.1.gz ln -s /usr/local/man/man1/blast.1.gz /wrkdirs/biology/ncbi-toolkit/stage/usr/local/man/man1/impala.1.gz ln -s /usr/local/man/man1/blast.1.gz /wrkdirs/biology/ncbi-toolkit/stage/usr/local/man/man1/megablast.1.gz ln -s /usr/local/man/man1/blast.1.gz /wrkdirs/biology/ncbi-toolkit/stage/usr/local/man/man1/seedtop.1.gz ln -s /usr/local/man/man1/blast.1.gz /wrkdirs/biology/ncbi-toolkit/stage/usr/local/man/man1/rpsblast.1.gz (cd /wrkdirs/biology/ncbi-toolkit/ncbi/data && install -m 0644 * /wrkdirs/biology/ncbi-toolkit/stage/usr/local/share/ncbi-toolkit) ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for ncbi-toolkit-2012.06.20_1 file sizes/checksums [813]: ......... done packing files [813]: ......... done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for ncbi-toolkit-2012.06.20_1 build of biology/ncbi-toolkit ended at Mon Mar 13 03:57:00 PDT 2017 build time: 00:16:33