=> Building math/R-cran-irlba build started at Sun Mar 12 17:42:02 PDT 2017 port directory: /usr/ports/math/R-cran-irlba building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.1380.gb4315f-DEVELOPMENT #0: Fri Mar 3 17:20:21 PST 2017 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: tota@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/Release48-default/ref/../02//usr/ports/math/R-cran-irlba/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400713 Jail OSVERSION: 400713 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release48-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-cran-irlba-2.1.2 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release48-default/ref/.p/pool MASTERNAME=Release48-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/math/R-cran-irlba XDG_CONFIG_HOME=/wrkdirs/math/R-cran-irlba HOME=/wrkdirs/math/R-cran-irlba TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/math/R-cran-irlba XDG_CONFIG_HOME=/wrkdirs/math/R-cran-irlba HOME=/wrkdirs/math/R-cran-irlba TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="gcc6" CFLAGS="-pipe -O2 -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing" CPP="cpp6" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6" LIBS="" CXX="g++6" CXXFLAGS=" -pipe -O2 -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc6" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/irlba OSREL=4.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/irlba" EXAMPLESDIR="share/examples/irlba" DATADIR="share/irlba" WWWDIR="www/irlba" ETCDIR="etc/irlba" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/irlba DOCSDIR=/usr/local/share/doc/irlba EXAMPLESDIR=/usr/local/share/examples/irlba WWWDIR=/usr/local/www/irlba ETCDIR=/usr/local/etc/irlba --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> R-cran-irlba-2.1.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.9.4_1.txz Installing pkg-1.9.4_1... Extracting pkg-1.9.4_1: .......... done ===> R-cran-irlba-2.1.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-irlba-2.1.2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-irlba-2.1.2 for building =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-irlba-2.1.2 for building => SHA256 Checksum OK for irlba_2.1.2.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-irlba-2.1.2 for building ===> Extracting for R-cran-irlba-2.1.2 => SHA256 Checksum OK for irlba_2.1.2.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for R-cran-irlba-2.1.2 =========================================================================== =================================================== ===> R-cran-irlba-2.1.2 depends on file: /usr/local/bin/R - not found ===> Installing existing package /packages/All/R-3.3.2_7.txz Installing R-3.3.2_7... `-- Installing indexinfo-0.2.6... `-- Extracting indexinfo-0.2.6: .... done `-- Installing libXt-1.1.5,1... | `-- Installing xproto-7.0.31... | `-- Extracting xproto-7.0.31: .......... done | `-- Installing libSM-1.2.2_3,1... | | `-- Installing libICE-1.0.9_1,1... | | `-- Extracting libICE-1.0.9_1,1: .......... done | `-- Extracting libSM-1.2.2_3,1: .......... done | `-- Installing libX11-1.6.4,1... | | `-- Installing kbproto-1.0.7... | | `-- Extracting kbproto-1.0.7: .......... done | | `-- Installing libXdmcp-1.1.2... | | `-- Extracting libXdmcp-1.1.2: ......... done | | `-- Installing libxcb-1.12... | | `-- Installing libxml2-2.9.4... | | `-- Extracting libxml2-2.9.4: .......... done | | `-- Installing libpthread-stubs-0.3_6... | | `-- Extracting libpthread-stubs-0.3_6: ..... done | | `-- Installing libXau-1.0.8_3... | | `-- Extracting libXau-1.0.8_3: .......... done | | `-- Extracting libxcb-1.12: .......... done | `-- Extracting libX11-1.6.4,1: .......... done `-- Extracting libXt-1.1.5,1: .......... done `-- Installing pango-1.38.0_1... | `-- Installing encodings-1.0.4_3,1... | | `-- Installing font-util-1.3.1... | | `-- Extracting font-util-1.3.1: .......... done | `-- Extracting encodings-1.0.4_3,1: .......... done | `-- Installing fontconfig-2.12.1,1... | | `-- Installing expat-2.2.0_1... | | `-- Extracting expat-2.2.0_1: .......... done | | `-- Installing freetype2-2.6.3... | | `-- Extracting freetype2-2.6.3: .......... done | `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: caching, new cache contents: 0 fonts, 2 dirs /usr/local/share/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs /usr/local/share/fonts/encodings/large: caching, new cache contents: 0 fonts, 0 dirs /usr/local/share/fonts/util: caching, new cache contents: 0 fonts, 0 dirs /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | `-- Installing libXft-2.3.2_1... | | `-- Installing libXrender-0.9.10... | | `-- Installing renderproto-0.11.1... | | `-- Extracting renderproto-0.11.1: .... done | | `-- Extracting libXrender-0.9.10: .......... done | `-- Extracting libXft-2.3.2_1: ......... done | `-- Installing harfbuzz-1.4.1... | | `-- Installing cairo-1.14.6_1,2... | | `-- Installing glproto-1.4.17... | | `-- Extracting glproto-1.4.17: ...... done | | `-- Installing libEGL-11.2.2... | | | `-- Installing libdevq-0.0.4... | | | `-- Extracting libdevq-0.0.4: .......... done | | | `-- Installing libXdamage-1.1.4_3... | | | `-- Installing libXfixes-5.0.3... | | | | `-- Installing fixesproto-5.0... | | | | `-- Extracting fixesproto-5.0: .... done | | | `-- Extracting libXfixes-5.0.3: .......... done | | | `-- Installing damageproto-1.2.1... | | | `-- Extracting damageproto-1.2.1: .... done | | | `-- Extracting libXdamage-1.1.4_3: ...... done | | | `-- Installing libxshmfence-1.2... | | | `-- Extracting libxshmfence-1.2: ......... done | | | `-- Installing libXext-1.3.3_1,1... | | | `-- Installing xextproto-7.3.0... | | | `-- Extracting xextproto-7.3.0: .......... done | | | `-- Extracting libXext-1.3.3_1,1: .......... done | | | `-- Installing gbm-11.2.2... | | | `-- Installing libglapi-11.2.2... | | | | `-- Installing libXvMC-1.0.10... | | | | `-- Installing libXv-1.0.11,1... | | | | | `-- Installing videoproto-2.3.3... | | | | | `-- Extracting videoproto-2.3.3: ......... done | | | | `-- Extracting libXv-1.0.11,1: .......... done | | | | `-- Extracting libXvMC-1.0.10: .......... done | | | | `-- Installing libdrm-2.4.74_1,1... | | | | `-- Installing libpciaccess-0.13.4... | | | | | `-- Installing pciids-20170128... | | | | | `-- Extracting pciids-20170128: ..... done | | | | `-- Extracting libpciaccess-0.13.4: ...... done | | | | `-- Extracting libdrm-2.4.74_1,1: .......... done | | | | `-- Installing libelf-0.8.13_2... | | | | `-- Installing gettext-runtime-0.19.8.1_1... | | | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | | | | `-- Extracting libelf-0.8.13_2: .......... done | | | `-- Extracting libglapi-11.2.2: ... done | | | `-- Extracting gbm-11.2.2: ..... done | | | `-- Installing llvm37-3.7.1_4... | | | `-- Installing python27-2.7.13_1... | | | | `-- Installing readline-6.3.8... | | | | `-- Installing ncurses-6.0_3... | | | | `-- Extracting ncurses-6.0_3: .......... done | | | | `-- Extracting readline-6.3.8: .......... done | | | | `-- Installing libffi-3.2.1... | | | | `-- Extracting libffi-3.2.1: .......... done | | | | `-- Installing libressl-2.4.5... | | | | `-- Extracting libressl-2.4.5: .......... done | | | `-- Extracting python27-2.7.13_1: .......... done | | | `-- Installing perl5-5.24.1... | | | `-- Extracting perl5-5.24.1: .......... done | | | `-- Installing libedit-3.1.20150325_2,1... | | | `-- Extracting libedit-3.1.20150325_2,1: .......... done | | | `-- Extracting llvm37-3.7.1_4: .......... done | | `-- Extracting libEGL-11.2.2: .......... done | | `-- Installing libGL-11.2.2... | | | `-- Installing dri2proto-2.8... | | | `-- Extracting dri2proto-2.8: .... done | | | `-- Installing libXxf86vm-1.1.4_1... | | | `-- Installing xf86vidmodeproto-2.3.1... | | | `-- Extracting xf86vidmodeproto-2.3.1: .... done | | | `-- Extracting libXxf86vm-1.1.4_1: .......... done | | `-- Extracting libGL-11.2.2: .......... done | | `-- Installing xcb-util-renderutil-0.3.9_1... | | | `-- Installing xcb-util-0.4.0_2,1... | | | `-- Extracting xcb-util-0.4.0_2,1: .......... done | | `-- Extracting xcb-util-renderutil-0.3.9_1: ...... done | | `-- Installing png-1.6.27... | | `-- Extracting png-1.6.27: .......... done | | `-- Installing pixman-0.34.0... | | `-- Extracting pixman-0.34.0: .......... done | | `-- Installing glib-2.46.2_4... | | | `-- Installing libiconv-1.14_10... | | | `-- Extracting libiconv-1.14_10: .......... done | | | `-- Installing pcre-8.40... | | | `-- Extracting pcre-8.40: .......... done | | `-- Extracting glib-2.46.2_4: .......... done No schema files found: doing nothing. | | `-- Extracting cairo-1.14.6_1,2: .......... done | | `-- Installing icu-58.2,1... | | `-- Extracting icu-58.2,1: .......... done | | `-- Installing graphite2-1.3.9... | | `-- Extracting graphite2-1.3.9: .......... done | `-- Extracting harfbuzz-1.4.1: .......... done | `-- Installing xorg-fonts-truetype-7.7_1... | | `-- Installing font-misc-meltho-1.0.3_3... | | `-- Installing mkfontdir-1.0.7... | | | `-- Installing mkfontscale-1.1.2... | | | `-- Installing libfontenc-1.1.3_1... | | | `-- Extracting libfontenc-1.1.3_1: ......... done | | | `-- Extracting mkfontscale-1.1.2: .. done | | `-- Extracting mkfontdir-1.0.7: .. done | | `-- Extracting font-misc-meltho-1.0.3_3: .......... done | | `-- Installing font-bh-ttf-1.0.3_3... | | `-- Extracting font-bh-ttf-1.0.3_3: .......... done | | `-- Installing font-misc-ethiopic-1.0.3_3... | | `-- Extracting font-misc-ethiopic-1.0.3_3: ... done | | `-- Installing dejavu-2.37... | | `-- Extracting dejavu-2.37: .......... done `-- Extracting pango-1.38.0_1: .......... done `-- Installing curl-7.52.1_1... | `-- Installing ca_root_nss-3.28.1... | `-- Extracting ca_root_nss-3.28.1: ........ done | `-- Installing krb5-1.14.4_1... | | `-- Installing pkgconf-1.2.1_1... | | `-- Extracting pkgconf-1.2.1_1: .......... done | `-- Extracting krb5-1.14.4_1: .......... done | `-- Installing libnghttp2-1.19.0... | `-- Extracting libnghttp2-1.19.0: .......... done `-- Extracting curl-7.52.1_1: .......... done `-- Installing ghostscript9-agpl-base-9.16_5... | `-- Installing cups-2.2.2_1... | | `-- Installing avahi-app-0.6.31_5... | | `-- Installing gnome_subr-1.0... | | `-- Extracting gnome_subr-1.0: . done | | `-- Installing gobject-introspection-1.46.0... | | | `-- Installing python2-2_3... | | | `-- Extracting python2-2_3: ...... done | | `-- Extracting gobject-introspection-1.46.0: .......... done | | `-- Installing gdbm-1.12... | | `-- Extracting gdbm-1.12: .......... done | | `-- Installing libdaemon-0.14_1... | | `-- Extracting libdaemon-0.14_1: .......... done | | `-- Installing dbus-glib-0.104... | | | `-- Installing dbus-1.10.14_2... ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. | | | `-- Extracting dbus-1.10.14_2: ......... done | | `-- Extracting dbus-glib-0.104: .......... done ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. | | `-- Extracting avahi-app-0.6.31_5: .......... done | | `-- Installing gnutls-3.5.8... | | `-- Installing nettle-3.3... | | | `-- Installing gmp-5.1.3_3... | | | `-- Extracting gmp-5.1.3_3: .......... done | | `-- Extracting nettle-3.3: .......... done | | `-- Installing libtasn1-4.10... | | `-- Extracting libtasn1-4.10: .......... done | | `-- Installing trousers-0.3.14_1... | | | `-- Installing tpm-emulator-0.7.4_1... ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. | | | `-- Extracting tpm-emulator-0.7.4_1: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | `-- Extracting trousers-0.3.14_1: .......... done | | `-- Installing p11-kit-0.23.3... | | `-- Extracting p11-kit-0.23.3: .......... done | | `-- Installing libunistring-0.9.7... | | `-- Extracting libunistring-0.9.7: .......... done | | `-- Installing libidn-1.33_1... | | `-- Extracting libidn-1.33_1: .......... done | | `-- Extracting gnutls-3.5.8: .......... done | | `-- Installing libpaper-1.1.24.4... | | `-- Extracting libpaper-1.1.24.4: .......... done ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. | `-- Extracting cups-2.2.2_1: .......... done | `-- Installing jbig2dec-0.13... | `-- Extracting jbig2dec-0.13: .......... done | `-- Installing gsfonts-8.11_8... | `-- Extracting gsfonts-8.11_8: .......... done | `-- Installing jpeg-turbo-1.5.1... | `-- Extracting jpeg-turbo-1.5.1: .......... done | `-- Installing lcms2-2.8... | | `-- Installing tiff-4.0.7_1... | | `-- Installing jbigkit-2.1_1... | | `-- Extracting jbigkit-2.1_1: .......... done | | `-- Extracting tiff-4.0.7_1: .......... done | `-- Extracting lcms2-2.8: .......... done `-- Extracting ghostscript9-agpl-base-9.16_5: .......... done `-- Installing gcc6-6.3.0... | `-- Installing mpc-1.0.3... | | `-- Installing mpfr-3.1.5_1... | | `-- Extracting mpfr-3.1.5_1: .......... done | `-- Extracting mpc-1.0.3: ...... done | `-- Installing binutils-2.27_5,1... | `-- Extracting binutils-2.27_5,1: .......... done `-- Extracting gcc6-6.3.0: .......... done `-- Installing gcc5-5.4.0... `-- Extracting gcc5-5.4.0: .......... done `-- Installing tk86-8.6.6... | `-- Installing tcl86-8.6.6_2... | `-- Extracting tcl86-8.6.6_2: .......... done | `-- Installing libXScrnSaver-1.2.2_3... | | `-- Installing scrnsaverproto-1.2.2... | | `-- Extracting scrnsaverproto-1.2.2: ... done | `-- Extracting libXScrnSaver-1.2.2_3: .......... done `-- Extracting tk86-8.6.6: .......... done `-- Installing libXmu-1.1.2_3,1... `-- Extracting libXmu-1.1.2_3,1: .......... done Extracting R-3.3.2_7: .......... done Message from ncurses-6.0_3: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.13_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from perl5-5.24.1: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from ca_root_nss-3.28.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.14_1: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from ghostscript9-agpl-base-9.16_5: Note: in order to use the script "dvipdf", dvips must be installed. This program is provided by another package print/tex-dvipsk. FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init have to be configured if you want to use FAPI feature. Message from gcc6-6.3.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc6 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from gcc5-5.4.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> R-cran-irlba-2.1.2 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-irlba-2.1.2 ===> R-cran-irlba-2.1.2 depends on executable: gfortran6 - found ===> R-cran-irlba-2.1.2 depends on executable: gcc6 - found ===> R-cran-irlba-2.1.2 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for R-cran-irlba-2.1.2 =========================================================================== =================================================== =========================================================================== =================================================== ===> R-cran-irlba-2.1.2 depends on file: /usr/local/bin/R - found ===> R-cran-irlba-2.1.2 depends on executable: gfortran6 - found ===> R-cran-irlba-2.1.2 depends on executable: gcc6 - found =========================================================================== =================================================== ===> Staging for R-cran-irlba-2.1.2 ===> Generating temporary packing list * installing *source* package 'irlba' ... ** package 'irlba' successfully unpacked and MD5 sums checked ** libs gcc6 -I/usr/local/lib/R/include -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -I"/usr/local/lib/R/library/Matrix/include" -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c irlb.c -o irlb.o gcc6 -I/usr/local/lib/R/include -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -I"/usr/local/lib/R/library/Matrix/include" -fpic -pipe -DLIBICONV_PLUG -O2 -Wl,-rpath=/usr/local/lib/gcc6 -isystem /usr/local/include -fno-strict-aliasing -c utility.c -o utility.o gcc6 -shared -L/usr/local/lib/R/lib -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -o irlba.so irlb.o utility.o -L/usr/local/lib/R/lib -lRlapack -L/usr/local/lib/R/lib -lRblas -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly4.7/5.4.0 -lgfortran -lm -lquadmath -L/usr/local/lib/R/lib -lR installing to /wrkdirs/math/R-cran-irlba/stage/usr/local/lib/R/library/irlba/libs ** R ** demo ** inst ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (irlba) /usr/bin/find /wrkdirs/math/R-cran-irlba/stage/usr/local/lib/R/library/irlba -name '*.so' -exec /usr/bin/strip {} + ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for R-cran-irlba-2.1.2 file sizes/checksums [30]: . done packing files [30]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for R-cran-irlba-2.1.2 build of math/R-cran-irlba ended at Sun Mar 12 17:43:59 PDT 2017 build time: 00:01:57