=> Building biology/p5-Bio-ASN1-EntrezGene build started at Sat Oct 8 14:44:05 PDT 2016 port directory: /usr/ports/biology/p5-Bio-ASN1-EntrezGene building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: perl@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/Release46-default/ref/../10//usr/ports/biology/p5-Bio-ASN1-EntrezGene/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400600 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release46-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=p5-Bio-ASN1-EntrezGene-1.72,1 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release46-default/ref/.p/pool MASTERNAME=Release46-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- INSTALLDIRS="site" CC="cc" CCFLAGS="-pipe -O2 -fno-strict-aliasing" PREFIX="/usr/local" INSTALLPRIVLIB="/usr/local/lib" INSTALLARCHLIB="/usr/local/lib" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl XDG_DATA_HOME=/wrkdirs/biology/p5-Bio-ASN1-EntrezGene XDG_CONFIG_HOME=/wrkdirs/biology/p5-Bio-ASN1-EntrezGene HOME=/wrkdirs/biology/p5-Bio-ASN1-EntrezGene TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 PERL_EXTUTILS_AUTOINSTALL="--skipdeps" PERL_MM_USE_DEFAULT="YES" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/biology/p5-Bio-ASN1-EntrezGene XDG_CONFIG_HOME=/wrkdirs/biology/p5-Bio-ASN1-EntrezGene HOME=/wrkdirs/biology/p5-Bio-ASN1-EntrezGene TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=4.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PERL_VERSION=5.20.3 PERL_VER=5.20 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.20 PROFILE="@comment " DOCSDIR="share/doc/Bio-ASN1-EntrezGene" EXAMPLESDIR="share/examples/Bio-ASN1-EntrezGene" DATADIR="share/Bio-ASN1-EntrezGene" WWWDIR="www/Bio-ASN1-EntrezGene" ETCDIR="etc/Bio-ASN1-EntrezGene" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/Bio-ASN1-EntrezGene DOCSDIR=/usr/local/share/doc/Bio-ASN1-EntrezGene EXAMPLESDIR=/usr/local/share/examples/Bio-ASN1-EntrezGene WWWDIR=/usr/local/www/Bio-ASN1-EntrezGene ETCDIR=/usr/local/etc/Bio-ASN1-EntrezGene --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== =========================================================================== =================================================== ===> p5-Bio-ASN1-EntrezGene-1.72,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> p5-Bio-ASN1-EntrezGene-1.72,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of p5-Bio-ASN1-EntrezGene-1.72,1 =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by p5-Bio-ASN1-EntrezGene-1.72,1 for building =========================================================================== =================================================== ===> Fetching all distfiles required by p5-Bio-ASN1-EntrezGene-1.72,1 for building => SHA256 Checksum OK for Bio-ASN1-EntrezGene-1.72.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by p5-Bio-ASN1-EntrezGene-1.72,1 for building ===> Extracting for p5-Bio-ASN1-EntrezGene-1.72,1 => SHA256 Checksum OK for Bio-ASN1-EntrezGene-1.72.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for p5-Bio-ASN1-EntrezGene-1.72,1 =========================================================================== =================================================== ===> p5-Bio-ASN1-EntrezGene-1.72,1 depends on package: p5-bioperl>=0 - not found ===> Installing existing package /packages/All/p5-bioperl-1.6.924_4.txz Installing p5-bioperl-1.6.924_4... `-- Installing p5-Set-Scalar-1.26_1... | `-- Installing perl5-5.20.3_15... | `-- Extracting perl5-5.20.3_15: .......... done `-- 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p5-IO-stringy-2.111... `-- Extracting p5-IO-stringy-2.111: .......... done `-- Installing p5-Class-AutoClass-1.56_1... | `-- Installing p5-Hash-AutoHash-1.17_1... | | `-- Installing p5-List-MoreUtils-0.416... | | `-- Installing p5-XSLoader-0.22... | | `-- Extracting p5-XSLoader-0.22: ....... done | | `-- Extracting p5-List-MoreUtils-0.416: .......... done | | `-- Installing p5-Tie-ToObject-0.03_2... | | `-- Extracting p5-Tie-ToObject-0.03_2: ... done | `-- Extracting p5-Hash-AutoHash-1.17_1: ....... done | `-- Installing p5-Hash-AutoHash-Args-1.18_1... | `-- Extracting p5-Hash-AutoHash-Args-1.18_1: ......... done `-- Extracting p5-Class-AutoClass-1.56_1: ........ done `-- Installing p5-Spreadsheet-ParseExcel-0.65_2,1... | `-- Installing p5-Digest-Perl-MD5-1.9_1... | `-- Extracting p5-Digest-Perl-MD5-1.9_1: ... done | `-- Installing p5-Crypt-RC4-2.02_1... | `-- Extracting p5-Crypt-RC4-2.02_1: ... done | `-- Installing p5-OLE-Storage_Lite-0.19_1... | `-- Extracting p5-OLE-Storage_Lite-0.19_1: ... done `-- Extracting p5-Spreadsheet-ParseExcel-0.65_2,1: .......... done `-- Installing p5-XML-Simple-2.22... | `-- Installing p5-XML-SAX-Expat-0.51_1... | `-- Extracting p5-XML-SAX-Expat-0.51_1: ....... done `-- Extracting p5-XML-Simple-2.22: ......... done `-- Installing p5-XML-Writer-0.625_1... `-- Extracting p5-XML-Writer-0.625_1: ... done `-- Installing p5-PostScript-0.06_2... `-- Extracting p5-PostScript-0.06_2: ......... done `-- Installing p5-Algorithm-Munkres-0.08_1... `-- Extracting p5-Algorithm-Munkres-0.08_1: ... done `-- Installing p5-Clone-0.38... `-- Extracting p5-Clone-0.38: ..... done `-- Installing p5-YAML-1.14... `-- Extracting p5-YAML-1.14: .......... done `-- Installing p5-Text-Tabs+Wrap-2013.0523_1... `-- Extracting p5-Text-Tabs+Wrap-2013.0523_1: ..... done Extracting p5-bioperl-1.6.924_4: .......... done Message from perl5-5.20.3_15: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from mysql56-client-5.6.33: * * * * * * * * * * * * * * * * * * * * * * * * Please be aware the database client is vulnerable to CVE-2015-3152 - SSL Downgrade aka "BACKRONYM". You may find more information at the following URL: http://www.vuxml.org/freebsd/36bd352d-299b-11e5-86ff-14dae9d210b8.html Although this database client is not listed as "affected", it is vulnerable and will not be receiving a patch. Please take note of this when deploying this software. * * * * * * * * * * * * * * * * * * * * * * * * Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from dejavu-2.35: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> p5-Bio-ASN1-EntrezGene-1.72,1 depends on package: p5-bioperl>=0 - found ===> Returning to build of p5-Bio-ASN1-EntrezGene-1.72,1 ===> p5-Bio-ASN1-EntrezGene-1.72,1 depends on package: perl5>=5.20<5.21 - found =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for p5-Bio-ASN1-EntrezGene-1.72,1 Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::ASN1::EntrezGene Writing MYMETA.yml and MYMETA.json =========================================================================== =================================================== ===> Building for p5-Bio-ASN1-EntrezGene-1.72,1 --- blib/lib/Bio/ASN1/.exists --- --- blib/arch/.exists --- --- blib/lib/auto/Bio/ASN1/EntrezGene/.exists --- --- blib/arch/auto/Bio/ASN1/EntrezGene/.exists --- --- blib/bin/.exists --- --- blib/script/.exists --- --- blib/man1/.exists --- --- blib/man3/.exists --- --- subdirs --- --- dynamic --- --- pm_to_blib --- --- linkext --- --- blibdirs --- --- config --- --- pm_to_blib --- cp lib/Bio/ASN1/Sequence.pm blib/lib/Bio/ASN1/Sequence.pm cp lib/Bio/ASN1/Sequence/Indexer.pm blib/lib/Bio/ASN1/Sequence/Indexer.pm cp lib/Bio/ASN1/EntrezGene/Indexer.pm blib/lib/Bio/ASN1/EntrezGene/Indexer.pm cp lib/Bio/ASN1/EntrezGene.pm blib/lib/Bio/ASN1/EntrezGene.pm --- pure_all --- --- manifypods --- Manifying blib/man3/Bio::ASN1::EntrezGene.3 Manifying blib/man3/Bio::ASN1::EntrezGene::Indexer.3 Manifying blib/man3/Bio::ASN1::Sequence.3 Manifying blib/man3/Bio::ASN1::Sequence::Indexer.3 --- all --- =========================================================================== =================================================== ===> p5-Bio-ASN1-EntrezGene-1.72,1 depends on package: p5-bioperl>=0 - found ===> p5-Bio-ASN1-EntrezGene-1.72,1 depends on package: perl5>=5.20<5.21 - found =========================================================================== =================================================== ===> Staging for p5-Bio-ASN1-EntrezGene-1.72,1 ===> Generating temporary packing list Installing /wrkdirs/biology/p5-Bio-ASN1-EntrezGene/stage/usr/local/lib/perl5/site_perl/Bio/ASN1/Sequence.pm Installing /wrkdirs/biology/p5-Bio-ASN1-EntrezGene/stage/usr/local/lib/perl5/site_perl/Bio/ASN1/EntrezGene.pm Installing /wrkdirs/biology/p5-Bio-ASN1-EntrezGene/stage/usr/local/lib/perl5/site_perl/Bio/ASN1/EntrezGene/Indexer.pm Installing /wrkdirs/biology/p5-Bio-ASN1-EntrezGene/stage/usr/local/lib/perl5/site_perl/Bio/ASN1/Sequence/Indexer.pm Installing /wrkdirs/biology/p5-Bio-ASN1-EntrezGene/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::ASN1::Sequence.3 Installing /wrkdirs/biology/p5-Bio-ASN1-EntrezGene/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::ASN1::EntrezGene.3 Installing /wrkdirs/biology/p5-Bio-ASN1-EntrezGene/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::ASN1::Sequence::Indexer.3 Installing /wrkdirs/biology/p5-Bio-ASN1-EntrezGene/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::ASN1::EntrezGene::Indexer.3 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for p5-Bio-ASN1-EntrezGene-1.72,1 file sizes/checksums [9]: . done packing files [9]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for p5-Bio-ASN1-EntrezGene-1.72,1 build of biology/p5-Bio-ASN1-EntrezGene ended at Sat Oct 8 14:45:29 PDT 2016 build time: 00:01:24