=> Building biology/ncbi-blast+ build started at Sat Oct 8 13:10:57 PDT 2016 port directory: /usr/ports/biology/ncbi-blast+ building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: bacon4000@gmail.com ident warning: no id keywords in /build/boomdata/data/.m/Release46-default/ref/../01//usr/ports/biology/ncbi-blast+/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400600 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release46-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=ncbi-blast+-2.2.30_3 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release46-default/ref/.p/pool MASTERNAME=Release46-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- AR="ar cr" --without-boost --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ncbi_cv_prog_amq_w=no MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/biology/ncbi-blast+ XDG_CONFIG_HOME=/wrkdirs/biology/ncbi-blast+ HOME=/wrkdirs/biology/ncbi-blast+ TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/biology/ncbi-blast+ XDG_CONFIG_HOME=/wrkdirs/biology/ncbi-blast+ HOME=/wrkdirs/biology/ncbi-blast+ TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="gcc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="g++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly4 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=4.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PERL_VERSION=5.20.3 PERL_VER=5.20 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.20 PROFILE="@comment " DOCSDIR="share/doc/blast+" EXAMPLESDIR="share/examples/blast+" DATADIR="share/blast+" WWWDIR="www/blast+" ETCDIR="etc/blast+" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/blast+ DOCSDIR=/usr/local/share/doc/blast+ EXAMPLESDIR=/usr/local/share/examples/blast+ WWWDIR=/usr/local/www/blast+ ETCDIR=/usr/local/etc/blast+ --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License PD accepted by the user =========================================================================== =================================================== ===> ncbi-blast+-2.2.30_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> ncbi-blast+-2.2.30_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-blast+-2.2.30_3 =========================================================================== =================================================== =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.2.30_3 for building =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.2.30_3 for building => SHA256 Checksum OK for ncbi-blast-2.2.30+-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.2.30_3 for building ===> Extracting for ncbi-blast+-2.2.30_3 => SHA256 Checksum OK for ncbi-blast-2.2.30+-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for ncbi-blast+-2.2.30_3 ===> Applying ports patches for ncbi-blast+-2.2.30_3 ===> Applying DragonFly patches for ncbi-blast+-2.2.30_3 /usr/bin/sed -i.bak -e 's|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|' -e '/--infodir=DIR/d' -e '/--mandir=DIR/d' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/configure /usr/bin/sed -i.bak -e 's|@prefix@|/wrkdirs/biology/ncbi-blast+/stage@prefix@|g' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.top =========================================================================== =================================================== ===> ncbi-blast+-2.2.30_3 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz Installing gmake-4.2.1_1... `-- Installing indexinfo-0.2.5... `-- Extracting indexinfo-0.2.5: .... done `-- Installing gettext-runtime-0.19.8.1... `-- Extracting gettext-runtime-0.19.8.1: .......... done Extracting gmake-4.2.1_1: .......... done ===> ncbi-blast+-2.2.30_3 depends on executable: gmake - found ===> Returning to build of ncbi-blast+-2.2.30_3 ===> ncbi-blast+-2.2.30_3 depends on file: /usr/local/bin/python2.7 - not found ===> Installing existing package /packages/All/python27-2.7.12.txz Installing python27-2.7.12... `-- Installing expat-2.2.0... `-- Extracting expat-2.2.0: .......... done `-- Installing readline-6.3.8... | `-- Installing ncurses-6.0_5... | `-- Extracting ncurses-6.0_5: .......... done `-- Extracting readline-6.3.8: .......... done `-- Installing libffi-3.2.1... `-- Extracting libffi-3.2.1: .......... done Extracting python27-2.7.12: .......... done Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> ncbi-blast+-2.2.30_3 depends on file: /usr/local/bin/python2.7 - found ===> Returning to build of ncbi-blast+-2.2.30_3 ===> ncbi-blast+-2.2.30_3 depends on package: perl5>=5.20<5.21 - not found ===> Installing existing package /packages/All/perl5-5.20.3_15.txz Installing perl5-5.20.3_15... Extracting perl5-5.20.3_15: .......... done Message from perl5-5.20.3_15: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> ncbi-blast+-2.2.30_3 depends on package: perl5>=5.20<5.21 - found ===> Returning to build of ncbi-blast+-2.2.30_3 =========================================================================== =================================================== ===> ncbi-blast+-2.2.30_3 depends on shared library: libpcre.so - not found ===> Installing existing package /packages/All/pcre-8.39.txz Installing pcre-8.39... Extracting pcre-8.39: .......... done ===> ncbi-blast+-2.2.30_3 depends on shared library: libpcre.so - found (/usr/local/lib/libpcre.so) ===> Returning to build of ncbi-blast+-2.2.30_3 =========================================================================== =================================================== ===> Configuring for ncbi-blast+-2.2.30_3 configure: loading site script /usr/ports/Templates/config.site configure: creating cache config.cache checking build system type... x86_64-portbld-dragonfly4.6 checking host system type... x86_64-portbld-dragonfly4.6 checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ Using built-in specs. 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config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial/datatool/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/./Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc/ncbiconf_unix.h config.status: executing default commands /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib/ncbicfg.c is updated Platform not defined for DragonFly x86_64 -- please fix me Prebuilt project_tree_builder not found =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O LIBRARIES: build as static by default FEATURES: GCC MT LFS DLL unix WinMain PACKAGES: enabled: Z BZ2 PCRE OPENSSL PYTHON PERL MAGIC disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GCRYPT GNUTLS KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON23 PYTHON24 PYTHON25 Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.Spirit Boost.System Boost.Test Boost.Test.Included Boost.Threads C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MIMETIC GSOAP AVRO MONGODB PROJECTS: enabled: cgi local_lbsm connext ncbi_crypt serial objects dbapi app algo disabled: bdb ctools gui gbench Tools / flags / paths: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.mk Configuration header: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc/ncbiconf_unix.h To build everything: cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build && make all_r or simply run make in the current directory ******* CONFIGURATION SUCCESSFUL ******* =========================================================================== =================================================== ===> Building for ncbi-blast+-2.2.30_3 gmake[1]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++' if test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build && gmake -f Makefile.flat; \ elif test -s ""; then \ cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build && gmake -w -j5 --jobserver-auth=7,9 all_p; \ else \ cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build && gmake -w -j5 --jobserver-auth=7,9 all_r; \ fi gmake[2]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[2]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/db/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/ctools/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/misc/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/sra/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/gui/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/ctools/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/ctools/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/db/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/db/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/sra/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/sra/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/gui/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/gui/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/misc/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/misc/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/sample/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/internal/Makefile.in` /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT db/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT ctools/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT sra/Makefile test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/internal/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/internal/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/sample/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/sample/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT gui/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT internal/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/sra/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/ctools/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/db/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT misc/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/internal/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT sample/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/gui/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/sample/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/misc/Makefile /usr/local/bin/gmake -C corelib -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib/test/Makefile gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake[3] (Makefile.corelib.lib): Nothing to be done for `export-headers'. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake[3] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: *** No rule to make target '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib TMPL=corelib -w -j5 --jobserver-auth=12,13 all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_system.cpp: In function 'bool ncbi::SetMemoryLimitHard(size_t, ncbi::TLimitsPrintHandler, ncbi::TLimitsPrintParameter)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_system.cpp:384:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rl.rlim_cur > max_size) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_system.cpp:403:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rlas.rlim_cur > cur_soft_limit) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp:797:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:1759:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp:1703:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp:899:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp:1766:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp:899:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp:1791:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp:899:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp:1823:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp:899:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp:2869:44: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbifile.hpp:48, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbidiag.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:339:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbifile.cpp: In function 'void ncbi::s_GetFileSystemInfo(const string&, ncbi::CFileUtil::SFileSystemInfo*, ncbi::TFileSystemInfo)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbifile.cpp:4543:10: warning: variable 'need_name_max' set but not used [-Wunused-but-set-variable] bool need_name_max = true; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/obj_store.cpp -o obj_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/syslog.cpp -o syslog.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/request_ctx.cpp -o request_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/request_control.cpp -o request_control.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/expr.cpp -o expr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/resource_info.cpp -o resource_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib TMPL=test_mt -w -j5 --jobserver-auth=12,13 all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: *** No rule to make target '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib/test' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -C util -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/diff/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/image/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/qparse/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/demo/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/diff/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/qparse/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/image/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/image/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/demo/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT diff/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT qparse/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT image/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/diff/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/qparse/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/image/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/test/Makefile gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake[3] (Makefile.util.lib): Nothing to be done for `export-headers'. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util TMPL=util -w -j5 --jobserver-auth=12,13 all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE 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/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/table_printer.cpp -o table_printer.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o util_misc.o histogram_binning.o table_printer.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xutil.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -C regexp -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/regexp' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/regexp' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/regexp TMPL=regexp -w -j5 --jobserver-auth=16,17 mark-as-disabled gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/regexp' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/regexp' /usr/local/bin/gmake -C xregexp -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/xregexp TMPL=xregexp -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include -I/usr/local/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include -I/usr/local/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include -I/usr/local/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -C compress -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -C bzip2 -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j5 --jobserver-auth=18,19 mark-as-disabled gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/local/bin/gmake -C zlib -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/zlib TMPL=zlib -w -j5 --jobserver-auth=18,19 mark-as-disabled gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/local/bin/gmake -C api -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/api' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/api' /usr/local/bin/gmake[5] (Makefile.compress.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/api' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/api' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api TMPL=compress -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/api' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/stream.cpp -o stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/tar.cpp -o tar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/archive.cpp -o archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/archive_zip.cpp:45:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/miniz/miniz.c:3325:27: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE int mz_zip_reader_filename_compare(const mz_zip_array *pCentral_dir_array, const mz_zip_array *pCentral_dir_offsets, mz_uint l_index, const char *pR, mz_uint r_len) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/miniz/miniz.c:3314:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_reader_string_equal(const char *pA, const char *pB, mz_uint len, mz_uint flags) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/miniz/miniz.c:3225:39: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE const mz_uint8 *mz_zip_reader_get_cdh(mz_zip_archive *pZip, mz_uint file_index) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/miniz/miniz.c:2991:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_reader_filename_less(const mz_zip_array *pCentral_dir_array, const mz_zip_array *pCentral_dir_offsets, mz_uint l_index, mz_uint r_index) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/miniz/miniz.c:2918:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_push_back(mz_zip_archive *pZip, mz_zip_array *pArray, const void *pElements, size_t n) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/miniz/miniz.c:2913:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_ensure_room(mz_zip_archive *pZip, mz_zip_array *pArray, size_t n) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/miniz/miniz.c:2906:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_resize(mz_zip_archive *pZip, mz_zip_array *pArray, size_t new_size, mz_uint growing) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/miniz/miniz.c:2900:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_reserve(mz_zip_archive *pZip, mz_zip_array *pArray, size_t new_capacity, mz_uint growing) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/miniz/miniz.c:2885:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void mz_zip_array_clear(mz_zip_archive *pZip, mz_zip_array *pArray) ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/archive_zip.cpp:45:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/miniz/miniz.c:2431:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void tdefl_record_match(tdefl_compressor *d, mz_uint match_len, mz_uint match_dist) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/miniz/miniz.c:2423:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void tdefl_record_literal(tdefl_compressor *d, mz_uint8 lit) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/compress/api/miniz/miniz.c:2221:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void tdefl_find_match(tdefl_compressor *d, mz_uint lookahead_pos, mz_uint max_dist, mz_uint max_match_len, mz_uint *pMatch_dist, mz_uint *pMatch_len) ^ /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xcompress.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/compress' /usr/local/bin/gmake -C diff -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/diff' /usr/local/bin/gmake -C image -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/image' /usr/local/bin/gmake -C tables -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/tables/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/tables/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/tables/test/Makefile gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/tables' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/tables' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/tables TMPL=tables -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/tables' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.tables.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/tables' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/tables/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -C creaders -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/creaders' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/creaders' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/creaders TMPL=creaders -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/creaders' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.a .libcreaders.a.stamp ar cr libcreaders.a alnread.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libcreaders.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libcreaders.a /bin/ln -f .creaders.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.creaders.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -C sequtil -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/sequtil' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/sequtil' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/sequtil TMPL=sequtil -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/sequtil' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp: In static member function 'static ncbi::SIZE_TYPE ncbi::CSeqConvert_imp::x_Convert4naTo2na(const char*, ncbi::TSeqPos, ncbi::TSeqPos, char*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:701:72: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] table[static_cast(*(iter + 1)) * 2 + 1] & ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:729:72: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] table[static_cast(*(iter + 1)) * 3 + 1] & ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:735:72: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] table[static_cast(*(iter + 1)) * 3 + 1] & ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.sequtil.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -C bitset -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/bitset/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/bitset/demo/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/bitset/test/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/util/bitset/demo/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/bitset' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/bitset/test' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/bitset' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/bitset' /usr/local/bin/gmake -C qparse -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/qparse' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/test' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util/demo' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -C connect -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/daemons/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/test/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/daemons/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT daemons/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/daemons/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/test/Makefile gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake[3] (Makefile.connect.lib): Nothing to be done for `export-headers'. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake[3] (Makefile.connssl.lib): Nothing to be done for `export-headers'. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake[3] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake[3] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake[3] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. awk: can't open file /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find connect/connect in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat awk: can't open file /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find connect/xconnect in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat awk: can't open file /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find connect/xxconnect in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect TMPL=connect -w -j5 --jobserver-auth=12,13 all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_connect to make__connect_common per /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/.#lock-map. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_lbsm.c -o ncbi_lbsm.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_lbsm_ipc.c -o ncbi_lbsm_ipc.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_lbsmd.c -o ncbi_lbsmd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_lbsmd.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect TMPL=connssl -w -j5 --jobserver-auth=12,13 all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect TMPL=xxconnect -w -j5 --jobserver-auth=12,13 all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_xxconnect to make__connect_common per /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/.#lock-map. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect TMPL=xconnect -w -j5 --jobserver-auth=12,13 all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_xconnect to make__connect_common per /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/.#lock-map. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_lbsmd.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect TMPL=xthrserv -w -j5 --jobserver-auth=12,13 all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/server.cpp -o server.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/threaded_server.cpp:33:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/connect/threaded_server.hpp:78:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/threaded_server.cpp:33:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/connect/threaded_server.hpp:78:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -C services -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services/test/Makefile gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake[4] (Makefile.xconnserv.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake[4] (Makefile.ncbi_xcache_netcache.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake[4] (Makefile.ncbi_xblobstorage_netcache.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services TMPL=xconnserv -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE 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-D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o balancing.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_admin.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o pack_int.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp /bin/rm -f libncbi_xcache_netcache-dll.so .libncbi_xcache_netcache-dll.so.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xcache_netcache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC neticache_client.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.so /bin/ln -f .ncbi_xcache_netcache-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -C ext -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ext/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ext/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ext/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext/test/Makefile gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake[4] (Makefile.connext.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake[4] (Makefile.xconnext.lib): Nothing to be done for `export-headers'. awk: can't open file /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find connect/ext/connext in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat awk: can't open file /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find connect/ext/xconnext in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ext TMPL=connext -w -j5 --jobserver-auth=14,15 all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_connext to make__ext_common per /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ext/.#lock-map. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ext/ncbi_iprange.c -o ncbi_iprange.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ext/ncbi_localnet.c -o ncbi_localnet.o /bin/rm -f libconnext.a .libconnext.a.stamp ar cr libconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_iprange.o ncbi_localnet.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnext.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libconnext.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libconnext.a /bin/ln -f .connext.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.connext.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ext TMPL=xconnext -w -j5 --jobserver-auth=14,15 all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_xconnext to make__ext_common per /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ext/.#lock-map. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp -o ncbi_dblb_svcmapper.o /bin/rm -f libxconnext.a .libxconnext.a.stamp ar cr libxconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_iprange.o ncbi_localnet.o ncbi_dblb_svcmapper.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnext.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxconnext.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxconnext.a /bin/ln -f .xconnext.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xconnext.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/test' /usr/local/bin/gmake -C daemons -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect/daemons' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -C cgi -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi/test/Makefile gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake[3] (Makefile.cgi.lib): Nothing to be done for `export-headers'. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake[3] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. awk: can't open file /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find cgi/cgi in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat awk: can't open file /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find cgi/fcgi in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.flat gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi TMPL=cgi -w -j5 --jobserver-auth=12,13 all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_cgi to make__cgi_common per /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/.#lock-map. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi TMPL=fcgi -w -j5 --jobserver-auth=12,13 all /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_fcgi to make__cgi_common per /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/.#lock-map. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include -DNCBI_XFCGI_EXPORTS /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi/test' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -C html -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/demo/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/test/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/demo/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html/demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html/test/Makefile gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake[3] (Makefile.html.lib): Nothing to be done for `export-headers'. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html TMPL=html -w -j5 --jobserver-auth=12,13 all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/html.cpp -o html.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/page.cpp -o page.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/selection.cpp -o selection.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/components.cpp -o components.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/indentstream.cpp -o indentstream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/html_exception.cpp -o html_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xhtml.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html/test' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html/demo' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -C build-system -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -C project_tree_builder -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/local/lib -lpcre -lm -o project_tree_builder strip project_tree_builder /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/project_tree_builder gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/local/bin/gmake -C msbuild -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j5 --jobserver-auth=18,19 mark-as-disabled gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/build-system' /usr/local/bin/gmake -C serial -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/soap/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/test/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/soap/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT soap/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial/soap/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial/test/Makefile gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake[3] (Makefile.serial.lib): Nothing to be done for `export-headers'. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake[3] (Makefile.cserial.lib): Nothing to be done for `export-headers'. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial TMPL=serial -w -j5 --jobserver-auth=12,13 all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objectiter.cpp -o objectiter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objectio.cpp -o objectio.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/typeref.cpp -o typeref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/typemap.cpp -o typemap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/enumerated.cpp -o enumerated.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/memberid.cpp -o memberid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/memberlist.cpp -o memberlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/item.cpp -o item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/classinfob.cpp -o classinfob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/member.cpp -o member.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/classinfo.cpp -o classinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/variant.cpp -o variant.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/choice.cpp -o choice.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/choiceptr.cpp -o choiceptr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objistr.cpp -o objistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objostr.cpp -o objostr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objcopy.cpp -o objcopy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/iterator.cpp -o iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/serial.cpp -o serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/delaybuf.cpp -o delaybuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/pack_string.cpp -o pack_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/exception.cpp -o exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objhook.cpp -o objhook.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objlist.cpp -o objlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objstack.cpp -o objstack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objostrasn.cpp -o objostrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objistrasn.cpp -o objistrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objostrxml.cpp -o objostrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objistrxml.cpp -o objistrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objostrjson.cpp -o objostrjson.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objistrxml.cpp: In member function 'virtual std::__cxx11::string ncbi::CObjectIStreamXml::ReadFileHeader()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objistrxml.cpp:583:33: warning: variable 'docType' set but not used [-Wunused-but-set-variable] CTempString docType = ReadName(SkipWS()); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/objistrjson.cpp -o objistrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/serializable.cpp -o serializable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/serialobject.cpp -o serialobject.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/pathhook.cpp -o pathhook.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial TMPL=cserial -w -j5 --jobserver-auth=12,13 all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/asntypes.cpp -o asntypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -C datatool -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial/datatool' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial/datatool' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool TMPL=datatool -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial/datatool' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o 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-D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/classstr.cpp -o classstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/value.cpp -o value.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/module.cpp -o module.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/moduleset.cpp -o moduleset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/code.cpp -o code.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/fileutil.cpp -o fileutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/alexer.cpp -o alexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/aparser.cpp -o aparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/parser.cpp -o parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/lexer.cpp -o lexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/exceptions.cpp -o exceptions.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/comments.cpp -o comments.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/srcutil.cpp -o srcutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -o datatool strip datatool /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f datatool /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial/datatool' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial/test' /usr/local/bin/gmake -C soap -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial/soap' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -C db -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/db' /usr/local/bin/gmake -C dbapi -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/simple/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/lang_bind/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/simple/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT simple/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/lang_bind/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT lang_bind/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/simple/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/test/Makefile gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake[3] (Makefile.dbapi.lib): Nothing to be done for `export-headers'. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi TMPL=dbapi -w -j5 --jobserver-auth=12,13 all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/variant.cpp -o variant.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.dbapi.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C driver -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/ctlib/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/ftds64/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dblib/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/mysql/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/util/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/ftds64/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/ftds64/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/mysql/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dblib/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dblib/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/samples/Makefile.in` /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT util/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT ftds64/Makefile test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/ctlib/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT mysql/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT ctlib/Makefile test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/samples/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT dblib/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/ftds64/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/dblib/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT samples/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake[4] (Makefile.dbapi_driver.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/exception.cpp -o exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/public.cpp -o public.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/types.cpp -o types.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/memory_store.cpp -o memory_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o /usr/bin/g++ -std=gnu++11 -shared -o libdbapi_driver-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C util -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/util' /usr/local/bin/gmake -C ctlib -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /usr/local/bin/gmake -C ftds64 -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/ftds64' /usr/local/bin/gmake -C dblib -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/dblib' /usr/local/bin/gmake -C mysql -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /usr/local/bin/gmake -C odbc -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w -j5 --jobserver-auth=18,19 mark-as-disabled gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -C samples -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C simple -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/simple' /usr/local/bin/gmake -C cache -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/cache/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/cache/admintool/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/cache/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/cache/test/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/cache/admintool/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/cache/admintool/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT admintool/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/cache/admintool/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/cache/test/Makefile gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/cache' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake[4] (Makefile.ncbi_xcache_dbapi.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/cache' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/cache' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp -o dbapi_blob_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp -o dbapi_blob_cache_cf.o /bin/rm -f libncbi_xcache_dbapi.a .libncbi_xcache_dbapi.a.stamp /bin/rm -f libncbi_xcache_dbapi-dll.so .libncbi_xcache_dbapi-dll.so.stamp ar cr libncbi_xcache_dbapi.a dbapi_blob_cache.o dbapi_blob_cache_cf.o /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xcache_dbapi-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC dbapi_blob_cache.o dbapi_blob_cache_cf.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -ldbapi -ldbapi_driver-dll -lxncbi -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi.a /bin/ln -f .ncbi_xcache_dbapi.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi.dep /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi-dll.so /bin/ln -f .ncbi_xcache_dbapi-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi-dll.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/cache' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/cache/test' /usr/local/bin/gmake -C admintool -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/cache' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/cache/admintool' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake -C lang_bind -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/lang_bind' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C objects -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/Makefile.sources builddir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE=/usr/local/bin/gmake; export MAKE; \ ( cd $i && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-w -j5 --jobserver-auth=16,17" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/omssa' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA -oc omssa -or objects/omssa -odi -od omssa.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/omssa' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/access' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m access.asn -M "" -oA -oc access -or objects/access -odi -od access.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd access.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/access' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat/scoremat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastdb' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml2' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml2' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cdd' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA -oc cdd -or objects/cdd -odi -od cdd.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cdd' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/docsum' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m docsum.asn -M "" -oA -oc docsum -or objects/docsum -odi -od docsum.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/docsum' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biotree' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA -oc biotree -or objects/biotree -odi -od biotree.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biotree' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrezgene' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrezgene' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/featdef' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m featdef.asn -M "" -oA -oc featdef -or objects/featdef -odi -od featdef.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/featdef' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit/seqsplit.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id2' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id2' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m insdseq.asn -M "" -oA -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m macro.asn -M "" -oA -oc macro -or objects/macro -odi -od macro.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medlars' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medlars' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mim' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m mim.asn -M "" -oA -oc mim -or objects/mim -odi -od mim.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mim' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medlars/medlars.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mla' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mla' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb2' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb2' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb3' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb3' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/ncbimime' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/ncbimime' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m objprt.asn -M "" -oA -oc objprt -or objects/objprt -odi -od objprt.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA -oc proj -or objects/proj -odi -od proj.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqblock/seqblock.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqres/seqres.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqblock' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqblock' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqcode' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqcode' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqres' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqres' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/submit' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/submit' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon3' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon3' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/tinyseq' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m tinyseq.asn -M "" -oA -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/tinyseq' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcsubstance' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcsubstance' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcassay' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcassay' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA -oc remap -or objects/remap -odi -od remap.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/homologene' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA -oc homologene -or objects/homologene -odi -od homologene.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/homologene' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqedit' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqedit' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtable' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtable' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtest' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtest' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump datatool: 2.12.0 Warning: (810.1) No service name provided for CTrackMgrClient gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/submit/submit.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valerr' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valerr' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valid' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valid' Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genesbyloc' /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m genesbyloc.asn -M "" -oA -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump datatool: 2.12.0 gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genesbyloc' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -C general -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/test/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/general/test/Makefile cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh general all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/general' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake[4] (Makefile.general.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/general' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general TMPL=general -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/general' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general__.cpp -o general__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general___.cpp -o general___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.general.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/general' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/general/test' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/general' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -C biblio -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh biblio all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biblio' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biblio' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio TMPL=biblio -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biblio' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/Affil_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio___.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/DOI_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CDOI_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/DOI_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("DOI", CDOI, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/MedlineUID_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CMedlineUID_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/MedlineUID_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("MedlineUID", CMedlineUID, STD, (int)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/PII_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPII_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/PII_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PII", CPII, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/PmPid_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPmPid_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/PmPid_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PmPid", CPmPid, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/PmcID_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPmcID_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/PmcID_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PmcID", CPmcID, STD, (int)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/PmcPid_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPmcPid_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/PmcPid_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PmcPid", CPmcPid, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/PubMedId_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPubMedId_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/PubMedId_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PubMedId", CPubMedId, STD, (int)) ^ /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.biblio.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake -C medline -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh medline all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medline' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medline' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline TMPL=medline -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medline' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.medline.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake -C pub -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh pub all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pub' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pub' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub TMPL=pub -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pub' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.pub.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake -C seqcode -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqcode && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh seqcode all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqcode' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqcode' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqcode' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqcode' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqcode' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqcode' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqcode TMPL=seqcode -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqcode' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.seqcode.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake -C seq -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/test/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq/test/Makefile gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/Makefile.sources builddir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. status=0 ; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../$x ; \ (cd $d && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status Platform not defined for DragonFly x86_64 -- please fix me gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign' gmake[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign' Platform not defined for DragonFly x86_64 -- please fix me gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqblock' gmake[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqblock' Platform not defined for DragonFly x86_64 -- please fix me gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat' gmake[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat' Platform not defined for DragonFly x86_64 -- please fix me gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc' gmake[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc' Platform not defined for DragonFly x86_64 -- please fix me gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqres' gmake[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqres' Platform not defined for DragonFly x86_64 -- please fix me gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtable' gmake[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtable' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh seq all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqblock/seqblock.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqres/seqres.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq TMPL=seq -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include seqalign__.cpp -o seqalign__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include seqblock__.cpp -o seqblock__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include seqfeat__.cpp -o seqfeat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include seqloc__.cpp -o seqloc__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include seqres__.cpp -o seqres__.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:3:0, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/BioSource.cpp: In member function 'bool ncbi::objects::CBioSource::RemoveSubSource(unsigned int)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/BioSource.cpp:1257:62: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((*it)->IsSetSubtype() && (*it)->GetSubtype() == subtype) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/BioSource.cpp: In member function 'bool ncbi::objects::CBioSource::RemoveOrgMod(unsigned int)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/BioSource.cpp:1279:62: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((*it)->IsSetSubtype() && (*it)->GetSubtype() == subtype) { ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq__.cpp:17:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/MolInfo.cpp: In static member function 'static std::__cxx11::string ncbi::objects::CMolInfo::GetBiomolName(ncbi::objects::CMolInfo_Base::TBiomol)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/MolInfo.cpp:121:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] unsigned(g_iter->second) != biomol) { ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:25:0, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/OrgMod.cpp: In function 'void ncbi::objects::s_ProcessInstitutionCollectionCodeLine(const ncbi::CTempString&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/OrgMod.cpp:184:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < vouch_types.size(); i++) { ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1371:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1375:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1380:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1354:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In function 'ncbi::TSeqPos ncbi::objects::s_GetGapCount(const ncbi::objects::CSeq_align&, ncbi::objects::CSeq_align_Base::TDim, const ncbi::CRangeCollection&, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1503:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (row != r) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'ncbi::TSeqPos ncbi::objects::CSeq_align::GetNumFrameshifts(ncbi::objects::CSeq_align_Base::TDim) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1641:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (row != r) { ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static std::__cxx11::string ncbi::objects::CSubSource::FixDateFormat(const string&, bool, bool&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:616:12: warning: unused variable 'i' [-Wunused-variable] size_t i; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static void ncbi::objects::CSubSource::DetectDateFormat(const string&, bool&, bool&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:847:57: warning: 'typedef' was ignored in this declaration typedef enum EPos { eDay = 0, eMonth = 1, eYear = 2 }; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static void ncbi::objects::CSubSource::IsCorrectLatLonFormat(std::__cxx11::string, bool&, bool&, bool&, bool&, double&, double&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:904:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] || processed != lat_lon.length()) { ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function 'std::__cxx11::string ncbi::objects::s_GetNumFromLatLonToken(std::__cxx11::string, std::__cxx11::string)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:1161:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (val_str.substr(pos + 1).length() < prec) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:1164:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (val_str.substr(pos + 1).length() > prec) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function 'bool ncbi::objects::s_IsNumberStringInRange(const string&, double)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:1186:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] || processed != val_str.length() ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static bool ncbi::objects::CCountries::IsSubstringOfStringInList(const string&, const string&, int)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:3044:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (pos2 != NPOS) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static std::__cxx11::string ncbi::objects::CCountries::CountryFixupItem(const string&, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:3316:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos != NPOS) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include seqtable__.cpp -o seqtable__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq___.cpp -o seq___.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/Align_def_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq___.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/Heterogen_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CHeterogen_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/Heterogen_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Heterogen", CHeterogen, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/IUPACaa_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CIUPACaa_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/IUPACaa_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("IUPACaa", CIUPACaa, StringStore, ()) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/IUPACna_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CIUPACna_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/IUPACna_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("IUPACna", CIUPACna, StringStore, ()) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBI2na_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBI2na_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBI2na_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBI2na", CNCBI2na, STL_CHAR_vector, (char)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBI4na_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBI4na_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBI4na_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBI4na", CNCBI4na, STL_CHAR_vector, (char)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBI8aa_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBI8aa_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBI8aa_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBI8aa", CNCBI8aa, STL_CHAR_vector, (char)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBI8na_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBI8na_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBI8na_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBI8na", CNCBI8na, STL_CHAR_vector, (char)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBIeaa_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBIeaa_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBIeaa_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBIeaa", CNCBIeaa, StringStore, ()) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBIpaa_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBIpaa_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBIpaa_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBIpaa", CNCBIpaa, STL_CHAR_vector, (char)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBIpna_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBIpna_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBIpna_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBIpna", CNCBIpna, STL_CHAR_vector, (char)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBIstdaa_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBIstdaa_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/NCBIstdaa_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBIstdaa", CNCBIstdaa, STL_CHAR_vector, (char)) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include seqloc___.cpp -o seqloc___.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqloc/PDB_mol_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPDB_mol_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqloc/PDB_mol_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PDB-mol-id", CPDB_mol_id, STD, (string)) ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/PCRPrimerName_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPCRPrimerName_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/PCRPrimerName_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PCRPrimerName", CPCRPrimerName, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPCRPrimerSeq_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PCRPrimerSeq", CPCRPrimerSeq, STD, (string)) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include seqtable___.cpp -o seqtable___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'void ncbi::objects::CSeqportUtil_implementation::InitIndexCodeName()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp:1750:47: warning: typedef 'Ttables' locally defined but not used [-Wunused-local-typedefs] typedef list > Ttables; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp:1751:47: warning: typedef 'Tcodes' locally defined but not used [-Wunused-local-typedefs] typedef list > Tcodes; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'bool ncbi::objects::CSeqportUtil_implementation::IsCodeAvailable(ncbi::objects::ESeq_code_type)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp:5789:47: warning: typedef 'Ttables' locally defined but not used [-Wunused-local-typedefs] typedef list > Ttables; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::objects::CSeqportUtil::TPair ncbi::objects::CSeqportUtil_implementation::GetCodeIndexFromTo(ncbi::objects::ESeq_code_type)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp:5813:47: warning: typedef 'Ttables' locally defined but not used [-Wunused-local-typedefs] typedef list > Ttables; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'const string& ncbi::objects::CSeqportUtil_implementation::GetCodeOrName(ncbi::objects::ESeq_code_type, ncbi::objects::CSeqportUtil_implementation::TIndex, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp:5847:47: warning: typedef 'Ttables' locally defined but not used [-Wunused-local-typedefs] typedef list > Ttables; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp:5848:47: warning: typedef 'Tcodes' locally defined but not used [-Wunused-local-typedefs] typedef list > Tcodes; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::objects::CSeqportUtil::TIndex ncbi::objects::CSeqportUtil_implementation::GetIndex(ncbi::objects::ESeq_code_type, const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp:5875:47: warning: typedef 'Ttables' locally defined but not used [-Wunused-local-typedefs] typedef list > Ttables; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqport_util.cpp:5876:47: warning: typedef 'Tcodes' locally defined but not used [-Wunused-local-typedefs] typedef list > Tcodes; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.seq.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq/test' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -C seqset -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh seqset all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqset' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqset' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset TMPL=seqset -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqset' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.seqset.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqset' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -C submit -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/submit && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh submit all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/submit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/submit' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/submit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/submit' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/submit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/submit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/submit TMPL=submit -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/submit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.submit.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake -C seqedit -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqedit && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh seqedit all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqedit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqedit' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqedit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqedit' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqedit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqedit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqedit TMPL=seqedit -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqedit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.seqedit.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake -C seqsplit -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh seqsplit all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit/seqsplit___.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit/ID2S_Chunk_Id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CID2S_Chunk_Id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit/ID2S_Chunk_Id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("ID2S-Chunk-Id", CID2S_Chunk_Id, STD, (int)) ^ /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake -C id1 -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1 && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh id1 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1 TMPL=id1 -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1 TMPL=id1cli -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -C id2 -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id2 && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh id2 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqsplit/seqsplit.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id2 TMPL=id2 -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id2 TMPL=id2cli -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -C entrez2 -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/demo/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2 && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh entrez2 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/E2Reply_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/entrez2___.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/Entrez2_db_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CEntrez2_db_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/Entrez2_db_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Entrez2-db-id", CEntrez2_db_id, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/Entrez2_dt_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CEntrez2_dt_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/Entrez2_dt_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Entrez2-dt", CEntrez2_dt, STD, (int)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/Entrez2_field_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CEntrez2_field_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/Entrez2_field_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Entrez2-field-id", CEntrez2_field_id, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/Entrez2_link_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CEntrez2_link_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/Entrez2_link_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Entrez2-link-id", CEntrez2_link_id, STD, (string)) ^ /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -C pubmed -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh pubmed all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pubmed' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pubmed' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed TMPL=pubmed -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pubmed' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.pubmed.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -C medlars -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medlars && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh medlars all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medlars' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medlars' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medlars' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medlars' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medlars' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medlars' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medlars TMPL=medlars -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medlars' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.medlars.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -C mla -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mla && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh mla all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medlars/medlars.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mla' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mla' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake[4] (Makefile.mla.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake[4] (Makefile.mlacli.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mla TMPL=mla -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mla TMPL=mlacli -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -C proj -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh proj all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/proj' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake[4] (Makefile.proj.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/proj' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj TMPL=proj -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/proj' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj/proj___.cpp -o proj___.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj/Projdesc_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj/proj___.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj/Project_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CProject_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/proj/Project_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Project-id", CProject_id, STD, (string)) ^ /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.proj.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake -C scoremat -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh scoremat all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/scoremat' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/scoremat' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat TMPL=scoremat -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/scoremat' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.scoremat.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake -C blast -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh blast all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat/scoremat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast TMPL=blast -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -C blastdb -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastdb && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh blastdb all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastdb' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastdb' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastdb TMPL=blastdb -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.blastdb.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake -C blastxml -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh blastxml all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml TMPL=blastxml -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.blastxml.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake -C blastxml2 -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml2 && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml2' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake -C mmdb -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/Makefile.sources builddir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. status=0 ; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status Platform not defined for DragonFly x86_64 -- please fix me gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1' gmake[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1' Platform not defined for DragonFly x86_64 -- please fix me gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb2' gmake[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb2' Platform not defined for DragonFly x86_64 -- please fix me gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb3' gmake[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb3' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake[4] (Makefile.mmdb.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb TMPL=mmdb -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include mmdb1__.cpp -o mmdb1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include mmdb2__.cpp -o mmdb2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include mmdb3__.cpp -o mmdb3__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include mmdb1___.cpp -o mmdb1___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include mmdb2___.cpp -o mmdb2___.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2, from mmdb1___.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/Atom_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CAtom_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/Atom_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Atom-id", CAtom_id, STD, (int)) ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb2/mmdb2___.cpp:2, from mmdb2___.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CAlternate_conformation_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Alternate-conformation-id", CAlternate_conformation_id, STD, (string)) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include mmdb3___.cpp -o mmdb3___.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/Mmdb_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CMmdb_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/Mmdb_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Mmdb-id", CMmdb_id, STD, (int)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb2/Model_coordinate_set_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CModel_coordinate_set_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb2/Model_coordinate_set_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Model-coordinate-set-id", CModel_coordinate_set_id, STD, (int)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb2/Model_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CModel_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb2/Model_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Model-id", CModel_id, STD, (int)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/Molecule_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CMolecule_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/Molecule_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Molecule-id", CMolecule_id, STD, (int)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/PCSubstance_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPCSubstance_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/PCSubstance_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PCSubstance-id", CPCSubstance_id, STD, (int)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/Residue_graph_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CResidue_graph_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/Residue_graph_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Residue-graph-id", CResidue_graph_id, STD, (int)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/Residue_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CResidue_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb1/Residue_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Residue-id", CResidue_id, STD, (int)) ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb3/Align_stats_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb3/mmdb3___.cpp:2, from mmdb3___.cpp:1: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb3/Biostruc_feature_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CBiostruc_feature_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb3/Biostruc_feature_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Biostruc-feature-id", CBiostruc_feature_id, STD, (int)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb3/Biostruc_feature_set_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CBiostruc_feature_set_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb3/Biostruc_feature_set_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Biostruc-feature-set-id", CBiostruc_feature_set_id, STD, (int)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb3/Step_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CStep_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb/../mmdb3/Step_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Step-id", CStep_id, STD, (int)) ^ /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.mmdb.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -C cn3d -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh cn3d all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cn3d' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake[4] (Makefile.cn3d.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cn3d' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d TMPL=cn3d -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cn3d' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d/Cn3d_GL_matrix_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d/cn3d___.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d/Cn3d_style_table_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CCn3d_style_table_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d/Cn3d_style_table_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Cn3d-style-table-id", CCn3d_style_table_id, STD, (int)) ^ /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.cn3d.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake -C cdd -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cdd && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh cdd all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cdd' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cdd' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cdd' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cdd' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cdd' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake[4] (Makefile.cdd.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cdd' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cdd TMPL=cdd -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cdd' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.cdd.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake -C ncbimime -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/ncbimime/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/ncbimime && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh ncbimime all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/medline/medline.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/ncbimime' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/ncbimime' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/ncbimime' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/ncbimime' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake[4] (Makefile.ncbimime.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -C pcsubstance -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcsubstance && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcsubstance' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcsubstance' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcsubstance' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcsubstance' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake[4] (Makefile.pcsubstance.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake -C pcassay -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcassay && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh pcassay all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcassay' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcassay' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcassay' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcassay' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcassay' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake[4] (Makefile.pcassay.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcassay' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcassay TMPL=pcassay -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcassay' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.pcassay.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake -C gbseq -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh gbseq all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq TMPL=gbseq -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/GBAltSeqData_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/gbseq___.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/GBAuthor_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CGBAuthor_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/GBAuthor_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("GBAuthor", CGBAuthor, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/GBCommentParagraph_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CGBCommentParagraph_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/GBCommentParagraph_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("GBCommentParagraph", CGBCommentParagraph, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/GBKeyword_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CGBKeyword_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/GBKeyword_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("GBKeyword", CGBKeyword, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/GBSecondary_accn_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CGBSecondary_accn_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/GBSecondary_accn_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("GBSecondary-accn", CGBSecondary_accn, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/GBSeqid_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CGBSeqid_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbseq/GBSeqid_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("GBSeqid", CGBSeqid, STD, (string)) ^ /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.gbseq.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake -C insdseq -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh insdseq all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/insdseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake[4] (Makefile.insdseq.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/insdseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq TMPL=insdseq -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/insdseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/INSDAltSeqData_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/insdseq___.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/INSDAuthor_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CINSDAuthor_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/INSDAuthor_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("INSDAuthor", CINSDAuthor, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/INSDCommentParagraph_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CINSDCommentParagraph_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/INSDCommentParagraph_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("INSDCommentParagraph", CINSDCommentParagraph, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/INSDKeyword_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CINSDKeyword_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/INSDKeyword_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("INSDKeyword", CINSDKeyword, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/INSDSecondary_accn_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CINSDSecondary_accn_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/INSDSecondary_accn_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("INSDSecondary-accn", CINSDSecondary_accn, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/INSDSeqid_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CINSDSeqid_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/insdseq/INSDSeqid_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("INSDSeqid", CINSDSeqid, STD, (string)) ^ /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.insdseq.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake -C tinyseq -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/tinyseq && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh tinyseq all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/tinyseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/tinyseq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/tinyseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/tinyseq' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake[4] (Makefile.tinyseq.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake -C biotree -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biotree && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh biotree all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biotree' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biotree' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biotree' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biotree' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biotree' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake[4] (Makefile.biotree.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biotree' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biotree TMPL=biotree -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biotree' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.biotree.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake -C entrezgene -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrezgene && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh entrezgene all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrezgene' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrezgene' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrezgene' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrezgene' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake[4] (Makefile.entrezgene.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -C omssa -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/omssa && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh omssa all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/omssa' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/omssa' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/omssa' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/omssa' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/omssa' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake[4] (Makefile.omssa.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/omssa' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/omssa TMPL=omssa -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/omssa' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.omssa.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake -C remap -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh remap all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake[4] (Makefile.remap.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake[4] (Makefile.remapcli.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap TMPL=remap -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap/remap___.cpp -o remap___.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap/RMReply_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap/remap___.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap/Remap_db_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CRemap_db_id_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap/Remap_db_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Remap-db-id", CRemap_db_id, STD, (string)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap/Remap_dt_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CRemap_dt_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap/Remap_dt_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Remap-dt", CRemap_dt, STD, (int)) ^ /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap TMPL=remapcli -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -C seqtest -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtest && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh seqtest all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtest' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtest' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtest' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtest' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqtest' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake[4] (Makefile.seqtest.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqtest' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtest TMPL=seqtest -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqtest' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.seqtest.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake -C taxon1 -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1 && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh taxon1 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -C taxon3 -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon3 && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh taxon3 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon3' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon3' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon3' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon3' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon3' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon3' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon3' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.taxon3.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake -C gbproj -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh gbproj all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/submit/submit.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbproj' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake[4] (Makefile.gbproj.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbproj' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj TMPL=gbproj -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbproj' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj/AbstractProjectItem_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj/gbproj___.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj/DummyObsoleteType_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CDummyObsoleteType_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:270:51: warning: unused variable 'base' [-Wunused-variable] #define DECLARE_BASE_OBJECT(ClassName) ClassName* base = 0 ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:286:13: note: in expansion of macro 'DECLARE_BASE_OBJECT' DECLARE_BASE_OBJECT(CClass); \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:481:5: note: in expansion of macro 'BEGIN_BASE_TYPE_INFO' BEGIN_BASE_TYPE_INFO(ClassName, NCBI_NAME2(ClassName,_Base), \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj/DummyObsoleteType_.cpp:88:1: note: in expansion of macro 'BEGIN_NAMED_BASE_CHOICE_INFO' BEGIN_NAMED_BASE_CHOICE_INFO("DummyObsoleteType", CDummyObsoleteType) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:279:27: warning: typedef 'CClass_Base' locally defined but not used [-Wunused-local-typedefs] typedef BaseClassName CClass_Base; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:481:5: note: in expansion of macro 'BEGIN_BASE_TYPE_INFO' BEGIN_BASE_TYPE_INFO(ClassName, NCBI_NAME2(ClassName,_Base), \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj/DummyObsoleteType_.cpp:88:1: note: in expansion of macro 'BEGIN_NAMED_BASE_CHOICE_INFO' BEGIN_NAMED_BASE_CHOICE_INFO("DummyObsoleteType", CDummyObsoleteType) ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj/gbproj__.cpp:9:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj/ProjectFolder.cpp: In member function 'void ncbi::objects::CProjectFolder::RemoveAllChildItems()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^ /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.gbproj.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake -C trackmgr -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh trackmgr all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake[4] (Makefile.trackmgr.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake[4] (Makefile.trackmgrcli.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake[4] (Makefile.trackmgrgridcli.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -C valerr -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valerr && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh valerr all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valerr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valerr' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valerr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valerr' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valerr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake[4] (Makefile.valerr.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valerr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valerr TMPL=valerr -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valerr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.valerr.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake -C valid -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valid && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh valid all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valid' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valid' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valid' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valid' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valid' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valid' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valid TMPL=valid -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valid' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.valid.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake -C access -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/access && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh access all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/access' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/access' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/access' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/access' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/access' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake[4] (Makefile.access.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/access' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/access TMPL=access -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/access' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/access/access__.cpp -o access__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.access.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake -C docsum -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/docsum && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh docsum all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/docsum' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/docsum' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/docsum' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/docsum' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/docsum' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake[4] (Makefile.docsum.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/docsum' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/docsum TMPL=docsum -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/docsum' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.docsum.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake -C featdef -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/featdef && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh featdef all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/featdef' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/featdef' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/featdef' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/featdef' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/featdef' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake[4] (Makefile.featdef.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/featdef' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/featdef TMPL=featdef -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/featdef' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.featdef.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake -C genomecoll -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh genome_collection all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.12.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll' cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.12.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake[4] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -C homologene -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/homologene && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh homologene all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/homologene' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/homologene' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/homologene' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/homologene' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/homologene' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake[4] (Makefile.homologene.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/homologene' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/homologene TMPL=homologene -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/homologene' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.homologene.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake -C mim -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mim && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh mim all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mim' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mim' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mim' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mim' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mim' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake[4] (Makefile.mim.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mim' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mim TMPL=mim -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mim' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.mim.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake -C objprt -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh objprt all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/objprt' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake[4] (Makefile.objprt.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/objprt' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt TMPL=objprt -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/objprt' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt/PrintForm_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt/objprt___.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt/TemplateName_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CTemplateName_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/objprt/TemplateName_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("TemplateName", CTemplateName, STD, (string)) ^ /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.objprt.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake -C variation -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/variation && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh variation all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/general/general.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/pub/pub.asn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/variation' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.12.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/variation' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/variation' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/variation' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/variation' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/variation' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/variation TMPL=variation -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/variation' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.variation.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -C macro -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh macro all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/macro' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake[4] (Makefile.macro.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/macro' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro TMPL=macro -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/macro' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/macro___.cpp -o macro___.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/AECRParse_action_.cpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/macro___.cpp:2: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Apply_table_extra_data_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CApply_table_extra_data_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:270:51: warning: unused variable 'base' [-Wunused-variable] #define DECLARE_BASE_OBJECT(ClassName) ClassName* base = 0 ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:286:13: note: in expansion of macro 'DECLARE_BASE_OBJECT' DECLARE_BASE_OBJECT(CClass); \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:481:5: note: in expansion of macro 'BEGIN_BASE_TYPE_INFO' BEGIN_BASE_TYPE_INFO(ClassName, NCBI_NAME2(ClassName,_Base), \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Apply_table_extra_data_.cpp:88:1: note: in expansion of macro 'BEGIN_NAMED_BASE_CHOICE_INFO' BEGIN_NAMED_BASE_CHOICE_INFO("Apply-table-extra-data", CApply_table_extra_data) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:279:27: warning: typedef 'CClass_Base' locally defined but not used [-Wunused-local-typedefs] typedef BaseClassName CClass_Base; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:481:5: note: in expansion of macro 'BEGIN_BASE_TYPE_INFO' BEGIN_BASE_TYPE_INFO(ClassName, NCBI_NAME2(ClassName,_Base), \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Apply_table_extra_data_.cpp:88:1: note: in expansion of macro 'BEGIN_NAMED_BASE_CHOICE_INFO' BEGIN_NAMED_BASE_CHOICE_INFO("Apply-table-extra-data", CApply_table_extra_data) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Fix_format_action_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CFix_format_action_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:270:51: warning: unused variable 'base' [-Wunused-variable] #define DECLARE_BASE_OBJECT(ClassName) ClassName* base = 0 ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:286:13: note: in expansion of macro 'DECLARE_BASE_OBJECT' DECLARE_BASE_OBJECT(CClass); \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:481:5: note: in expansion of macro 'BEGIN_BASE_TYPE_INFO' BEGIN_BASE_TYPE_INFO(ClassName, NCBI_NAME2(ClassName,_Base), \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Fix_format_action_.cpp:91:1: note: in expansion of macro 'BEGIN_NAMED_BASE_CHOICE_INFO' BEGIN_NAMED_BASE_CHOICE_INFO("Fix-format-action", CFix_format_action) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:279:27: warning: typedef 'CClass_Base' locally defined but not used [-Wunused-local-typedefs] typedef BaseClassName CClass_Base; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:481:5: note: in expansion of macro 'BEGIN_BASE_TYPE_INFO' BEGIN_BASE_TYPE_INFO(ClassName, NCBI_NAME2(ClassName,_Base), \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Fix_format_action_.cpp:91:1: note: in expansion of macro 'BEGIN_NAMED_BASE_CHOICE_INFO' BEGIN_NAMED_BASE_CHOICE_INFO("Fix-format-action", CFix_format_action) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Fix_sets_action_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CFix_sets_action_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:270:51: warning: unused variable 'base' [-Wunused-variable] #define DECLARE_BASE_OBJECT(ClassName) ClassName* base = 0 ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:286:13: note: in expansion of macro 'DECLARE_BASE_OBJECT' DECLARE_BASE_OBJECT(CClass); \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:481:5: note: in expansion of macro 'BEGIN_BASE_TYPE_INFO' BEGIN_BASE_TYPE_INFO(ClassName, NCBI_NAME2(ClassName,_Base), \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Fix_sets_action_.cpp:90:1: note: in expansion of macro 'BEGIN_NAMED_BASE_CHOICE_INFO' BEGIN_NAMED_BASE_CHOICE_INFO("Fix-sets-action", CFix_sets_action) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:279:27: warning: typedef 'CClass_Base' locally defined but not used [-Wunused-local-typedefs] typedef BaseClassName CClass_Base; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:481:5: note: in expansion of macro 'BEGIN_BASE_TYPE_INFO' BEGIN_BASE_TYPE_INFO(ClassName, NCBI_NAME2(ClassName,_Base), \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Fix_sets_action_.cpp:90:1: note: in expansion of macro 'BEGIN_NAMED_BASE_CHOICE_INFO' BEGIN_NAMED_BASE_CHOICE_INFO("Fix-sets-action", CFix_sets_action) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Pub_field_speci_const_type_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPub_field_special_constraint_type_Base::GetTypeInfo()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:270:51: warning: unused variable 'base' [-Wunused-variable] #define DECLARE_BASE_OBJECT(ClassName) ClassName* base = 0 ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:286:13: note: in expansion of macro 'DECLARE_BASE_OBJECT' DECLARE_BASE_OBJECT(CClass); \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:481:5: note: in expansion of macro 'BEGIN_BASE_TYPE_INFO' BEGIN_BASE_TYPE_INFO(ClassName, NCBI_NAME2(ClassName,_Base), \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Pub_field_speci_const_type_.cpp:92:1: note: in expansion of macro 'BEGIN_NAMED_BASE_CHOICE_INFO' BEGIN_NAMED_BASE_CHOICE_INFO("Pub-field-special-constraint-type", CPub_field_special_constraint_type) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:279:27: warning: typedef 'CClass_Base' locally defined but not used [-Wunused-local-typedefs] typedef BaseClassName CClass_Base; \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/serialimpl.hpp:481:5: note: in expansion of macro 'BEGIN_BASE_TYPE_INFO' BEGIN_BASE_TYPE_INFO(ClassName, NCBI_NAME2(ClassName,_Base), \ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Pub_field_speci_const_type_.cpp:92:1: note: in expansion of macro 'BEGIN_NAMED_BASE_CHOICE_INFO' BEGIN_NAMED_BASE_CHOICE_INFO("Pub-field-special-constraint-type", CPub_field_special_constraint_type) ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/macro__.cpp:72:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Location_constraint.cpp: In member function 'bool ncbi::objects::CLocation_constraint::x_DoesLocationMatchDistanceConstraint(ncbi::CConstRef, const ncbi::objects::CSeq_loc&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/macro/Location_constraint.cpp:196:34: warning: 'pos2' may be used uninitialized in this function [-Wmaybe-uninitialized] return GetEnd3().Match(pos2); ^ /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.macro.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -C genesbyloc -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genesbyloc && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genesbyloc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genesbyloc' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genesbyloc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genesbyloc' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake[4] (Makefile.genesbyloc.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake -C coords -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/coords && /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/new_module.sh objcoords all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -j5 --jobserver-auth=14,15 -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ DATATOOL=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/coords' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++ -opm /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src -m objcoords.asn -M "" -oA -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump datatool: 2.12.0 gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/coords' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/coords' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/coords' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/coords' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/coords' /usr/local/bin/gmake[4] (Makefile.objcoords.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/coords' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/coords' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/coords TMPL=objcoords -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/coords' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.objcoords.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -C objmgr -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/test/Makefile gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake[3] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr TMPL=objmgr -w -j5 --jobserver-auth=12,13 all gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/table_field.cpp -o table_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/seq_map_switch.cpp:105:15: warning: 'ncbi::CNcbiOstream& ncbi::objects::{anonymous}::operator<<(ncbi::CNcbiOstream&, const ncbi::objects::{anonymous}::SSeqPos&)' defined but not used [-Wunused-function] CNcbiOstream& operator<<(CNcbiOstream& out, const SSeqPos& pos) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/annot_object.cpp -o annot_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/tse_info.cpp -o tse_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/data_source.cpp -o data_source.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/priority.cpp -o priority.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/test' /usr/local/bin/gmake -C util -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake[4] (Makefile.util.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util TMPL=util -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/weight.cpp -o weight.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/seqtitle.cpp: In function 'bool ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq&, std::__cxx11::string*, ncbi::objects::sequence::TGetTitleFlags)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/seqtitle.cpp:672:16: warning: variable 'search_depth' set but not used [-Wunused-but-set-variable] size_t search_depth = 0; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::IsValid(const ncbi::objects::CPacked_seqpnt&, ncbi::objects::CScope*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/seq_loc_util.cpp:274:37: warning: typedef 'TPoints' locally defined but not used [-Wunused-local-typedefs] typedef CPacked_seqpnt::TPoints TPoints; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/sequence.cpp:2021:6: warning: 'void ncbi::objects::sequence::{anonymous}::x_GetFeatsById(ncbi::objects::CSeqFeatData::ESubtype, const ncbi::objects::CSeq_feat&, const ncbi::objects::CTSE_Handle&, std::__cxx11::list >&)' defined but not used [-Wunused-function] void x_GetFeatsById(CSeqFeatData::ESubtype subtype, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/util/sequence.cpp:2066:6: warning: 'void ncbi::objects::sequence::{anonymous}::x_GetFeatsByXref(ncbi::objects::CSeqFeatData::ESubtype, const ncbi::objects::CSeq_feat&, const ncbi::objects::CTSE_Handle&, std::__cxx11::list >&)' defined but not used [-Wunused-function] void x_GetFeatsByXref(CSeqFeatData::ESubtype subtype, ^ /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -C split -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/split' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/split' /usr/local/bin/gmake[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/split' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/split' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split TMPL=id2_split -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/split' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split/size.cpp -o size.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.id2_split.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -C objtools -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/unit_test_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/lds/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/cddalignview/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/lds/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/lds/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/test/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/lds2/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/manip/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/validator/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/cddalignview/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/unit_test_util/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/asniotest/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/manip/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/eutils/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/validator/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/validator/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/snputil/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/asniotest/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/asniotest/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/uudutil/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/variation/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/snputil/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/snputil/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/eutils/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/eutils/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/writers/Makefile.in` /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT unit_test_util/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT lds/Makefile test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/variation/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/variation/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/uudutil/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/uudutil/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT lds2/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT cddalignview/Makefile test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/writers/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/writers/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/lds/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT manip/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT validator/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/lds2/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/test/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT asniotest/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT align/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT eutils/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/validator/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/manip/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT snputil/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/eutils/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT uudutil/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT variation/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT writers/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/align/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/snputil/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/writers/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/variation/Makefile /usr/local/bin/gmake -C unit_test_util -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/unit_test_util' /usr/local/bin/gmake -C readers -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/app/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/unit_test/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/app/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT unit_test/Makefile test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT app/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers TMPL=xobjread -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/agp_read.cpp:33:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/agp_read.cpp:33:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/microarray_reader.cpp:86:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/readers/microarray_reader.hpp: In constructor 'ncbi::objects::CMicroArrayReader::CMicroArrayReader(int)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/readers/microarray_reader.hpp:119:10: warning: 'ncbi::objects::CMicroArrayReader::m_usescore' will be initialized after [-Wreorder] bool m_usescore; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/readers/microarray_reader.hpp:118:31: warning: 'std::vector >::size_type ncbi::objects::CMicroArrayReader::m_columncount' [-Wreorder] vector::size_type m_columncount; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/microarray_reader.cpp:99:1: warning: when initialized here [-Wreorder] CMicroArrayReader::CMicroArrayReader( ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff3_reader.cpp: In member function 'virtual bool ncbi::objects::CGff3Reader::xUpdateAnnotCds(const ncbi::objects::CGff2Record&, ncbi::CRef, ncbi::CRef, ncbi::objects::IMessageListener*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff3_reader.cpp:243:33: warning: unused variable 'loc' [-Wunused-variable] const CSeq_loc& loc = pF->GetLocation(); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'virtual bool ncbi::objects::CGff2Reader::x_ParseFeatureGff(const string&, ncbi::objects::CGff2Reader::TAnnots&, ncbi::objects::IMessageListener*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff2_reader.cpp:406:37: warning: unused variable 'table' [-Wunused-variable] CSeq_annot::TData::TFtable& table = pAnnot->SetData().SetFtable(); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xAlignmentSetSegment(const ncbi::objects::CGff2Record&, ncbi::CRef)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff2_reader.cpp:670:90: warning: 'static std::__cxx11::string ncbi::NStr::IntToString(long unsigned int, ncbi::NStr::TNumToStringFlags, int)' is deprecated [-Wdeprecated-declarations] gapParts.push_back(string("M") + NStr::IntToString(gff.SeqStop()-gff.SeqStart()+1)); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff2_reader.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:4605:8: note: declared here string NStr::IntToString(unsigned long value, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::x_FeatureTrimQualifiers(const ncbi::objects::CGff2Record&, ncbi::CRef)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/gff2_reader.cpp:876:38: warning: typedef 'TAttrs' locally defined but not used [-Wunused-local-typedefs] typedef CGff2Record::TAttributes TAttrs; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/source_mod_parser.cpp: In member function 'void ncbi::objects::CSourceModParser::x_ApplyMods(ncbi::CAutoInitRef&, ncbi::CTempString)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/source_mod_parser.cpp:626:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( colon_location == string::npos ) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.a .libxobjread.a.stamp ar cr libxobjread.a read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o message_listener.o line_error.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxobjread.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxobjread.a /bin/ln -f .xobjread.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xobjread.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers TMPL=xobjreadex -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/glimmer_reader.cpp -o glimmer_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/idmapper.cpp -o idmapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o /bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxobjreadex.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxobjreadex.a /bin/ln -f .xobjreadex.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xobjreadex.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -C app -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers/app' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers/test' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -C blast -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT gene_info_writer/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer/Makefile /usr/local/bin/gmake -C seqdb_reader -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake[5] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function 'const string* ncbi::s_CheckUniqueValues(const std::map, std::__cxx11::basic_string >&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2012:33: warning: typedef 'TStringMap' locally defined but not used [-Wunused-local-typedefs] typedef map TStringMap; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In member function 'void ncbi::CSeqDB_IdRemapper::GetIdList(std::vector&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2042:29: warning: typedef 'TIdMap' locally defined but not used [-Wunused-local-typedefs] typedef map TIdMap; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp: In member function 'ncbi::CRef ncbi::CSeqDBOIDList::x_ComputeFilters(const ncbi::CSeqDB_FilterTree&, const ncbi::CSeqDBVolEntry&, ncbi::CSeqDBGiListSet&, ncbi::CSeqDBLockHold&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:189:41: warning: typedef 'TFilters' locally defined but not used [-Wunused-local-typedefs] typedef CSeqDB_FilterTree::TFilters TFilters; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In function 'bool ncbi::s_SeqDB_SeqIdIn(const std::__cxx11::list >&, const ncbi::objects::CSeq_id&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:979:35: warning: typedef 'TSeqidList' locally defined but not used [-Wunused-local-typedefs] typedef list< CRef > TSeqidList; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'ncbi::CRef ncbi::CSeqDBVol::x_GetTaxDefline(int, int, ncbi::CSeqDBLockHold&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1005:43: warning: typedef 'TBDLLIter' locally defined but not used [-Wunused-local-typedefs] typedef TBDLL::iterator TBDLLIter; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1006:43: warning: typedef 'TBDLLConstIter' locally defined but not used [-Wunused-local-typedefs] typedef TBDLL::const_iterator TBDLLConstIter; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'std::__cxx11::list > ncbi::CSeqDBVol::x_GetTaxonomy(int, int, ncbi::CRef, ncbi::CSeqDBLockHold&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1058:43: warning: typedef 'TBDLLIter' locally defined but not used [-Wunused-local-typedefs] typedef TBDLL::iterator TBDLLIter; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In function 'ncbi::CRef ncbi::s_OssToDefline(const TOss&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1139:44: warning: typedef 'TOss' locally defined but not used [-Wunused-local-typedefs] typedef const CUser_field::TData::TOss TOss; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'ncbi::CRef ncbi::CSeqDBVol::GetBioseq(int, int, const ncbi::objects::CSeq_id*, ncbi::CRef, bool, ncbi::CSeqDBLockHold&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1256:43: warning: typedef 'TDeflines' locally defined but not used [-Wunused-local-typedefs] typedef list< CRef > TDeflines; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'int ncbi::CSeqDBIsam::x_DiffCharLease(const string&, ncbi::CSeqDBMemLease&, const string&, ncbi::CSeqDBIsam::TIndx, Uint4, ncbi::CSeqDBIsam::TIndx, bool, ncbi::CSeqDBLockHold&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:450:9: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result(-1); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&, ncbi::CSeqDBLockHold&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:943:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.seqdb.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j5 --jobserver-auth=18,19 all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O seqdb_demo.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o seqdb_demo strip seqdb_demo /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/seqdb_demo gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j5 --jobserver-auth=18,19 all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O seqdb_perf.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o seqdb_perf strip seqdb_perf /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/seqdb_perf gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -C seqdb_writer -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake[5] (Makefile.writedb.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp: In member function 'void ncbi::CWriteDB_Impl::SetMaskData(const ncbi::CMaskedRangesVector&, const std::vector&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:1196:46: warning: typedef 'TPairVector' locally defined but not used [-Wunused-local-typedefs] typedef vector< pair > TPairVector; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp: In function 'ncbi::CConstRef ncbi::s_FixBioseqDeltas(ncbi::CConstRef)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:315:44: warning: typedef 'TItems' locally defined but not used [-Wunused-local-typedefs] typedef list< CRef< CDelta_seq > > TItems; ^ /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.writedb.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -C gene_info_reader -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake[5] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.gene_info.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j5 --jobserver-auth=18,19 all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O gene_info_reader_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o gene_info_reader strip gene_info_reader /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/gene_info_reader gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -C gene_info_writer -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /usr/local/bin/gmake -C services -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake[5] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/services TMPL=blast_services -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=NETBLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.blast_services.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -C blastdb_format -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake[5] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/blast' /usr/local/bin/gmake -C lds -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/lds' /usr/local/bin/gmake -C lds2 -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/lds2' /usr/local/bin/gmake -C data_loaders -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/lds/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/trace/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/lds/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/lds/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/cdd/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT lds/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT cdd/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT lds2/Makefile test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/patcher/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/trace/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/trace/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT patcher/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT trace/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/lds/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/trace/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile /usr/local/bin/gmake -C genbank -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake[5] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake[5] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/split_parser.cpp -o split_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:487:10: warning: 'bool ncbi::objects::{anonymous}::s_Blob_idsLoaded(ncbi::objects::CLoadLockBlobIds&, const ncbi::objects::CLoadLockSeqIds&)' defined but not used [-Wunused-function] bool s_Blob_idsLoaded(CLoadLockBlobIds& ids, ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp /bin/rm -f libncbi_xreader-dll.so .libncbi_xreader-dll.so.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.so /bin/ln -f .ncbi_xreader-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp: In member function 'bool ncbi::objects::CGBDataLoader::HaveCache(ncbi::objects::CGBDataLoader::TCacheType)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:1193:42: warning: typedef 'TCaches' locally defined but not used [-Wunused-local-typedefs] typedef CReaderCacheManager::TCaches TCaches; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp: In member function 'void ncbi::objects::CGBDataLoader::PurgeCache(ncbi::objects::CGBDataLoader::TCacheType, time_t, ncbi::ICache::EKeepVersions)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:1207:42: warning: typedef 'TCaches' locally defined but not used [-Wunused-local-typedefs] typedef CReaderCacheManager::TCaches TCaches; ^ /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp /bin/rm -f libncbi_xloader_genbank-dll.so .libncbi_xloader_genbank-dll.so.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_genbank-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC gbloader.o gbload_util.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.so /bin/ln -f .ncbi_xloader_genbank-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -C cache -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake[6] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j5 --jobserver-auth=18,19 all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp /bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_cache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_cache.o writer_cache.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.so /bin/ln -f .ncbi_xreader_cache-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -C pubseq -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project pubseq due to unmet requirements: PubSeqOS gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/pubseq TMPL=ncbi_xreader_pubseqos -w -j5 --jobserver-auth=20,21 mark-as-disabled gmake[8]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /usr/local/bin/gmake -C id2 -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake[6] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j5 --jobserver-auth=18,19 all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp /bin/rm -f libncbi_xreader_id2-dll.so .libncbi_xreader_id2-dll.so.stamp ar cr libncbi_xreader_id2.a reader_id2.o /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id2-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_id2.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /bin/ln -f .ncbi_xreader_id2.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.so /bin/ln -f .ncbi_xreader_id2-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -C id1 -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake[6] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j5 --jobserver-auth=18,19 all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp /bin/rm -f libncbi_xreader_id1-dll.so .libncbi_xreader_id1-dll.so.stamp ar cr libncbi_xreader_id1.a reader_id1.o /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id1-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_id1.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lxconnect -lncbi_xreader-dll -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.so /bin/ln -f .ncbi_xreader_id1-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -C pubseq2 -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project pubseq2 due to unmet requirements: PubSeqOS gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/pubseq2 TMPL=ncbi_xreader_pubseqos2 -w -j5 --jobserver-auth=20,21 mark-as-disabled gmake[8]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /usr/local/bin/gmake -C gicache -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake[6] (Makefile.ncbi_xreader_gicache.lib): Nothing to be done for `export-headers'. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w -j5 --jobserver-auth=18,19 all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_DumpIndexCache': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:130:9: warning: variable 'bytes_written' set but not used [-Wunused-but-set-variable] int bytes_written = 0; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_DumpDataCache': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:152:9: warning: variable 'bytes_written' set but not used [-Wunused-but-set-variable] int bytes_written = 0; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_UnMapIndex': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:205:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Uint4 {aka unsigned int}' [-Wformat=] "GI_CACHE: Unmapping index file, filedes %d, map length %ld, path %s\n", ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_OpenIndexFile': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:271:17: warning: format '%d' expects argument of type 'int', but argument 5 has type 'ino_t {aka long unsigned int}' [-Wformat=] "GI_CACHE: Opened index file %s; filedes %d, inode %d, length %ld, path %s\n", ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:271:17: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'Uint4 {aka unsigned int}' [-Wformat=] /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:280:13: warning: variable 'bytes_written' set but not used [-Wunused-but-set-variable] int bytes_written = 0; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_OpenDataFile': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:328:17: warning: format '%d' expects argument of type 'int', but argument 5 has type 'ino_t {aka long unsigned int}' [-Wformat=] "GI_CACHE: Opened data file %s; filedes %d, inode %d, length %ld, path %s\n", ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:342:13: warning: variable 'bytes_written' set but not used [-Wunused-but-set-variable] int bytes_written = 0; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_MapIndex': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:391:17: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Uint4 {aka unsigned int}' [-Wformat=] "GI_CACHE: Memory mapped index file, filedes %d, map length %ld, path %s\n", ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GiDataIndex_GetMaxGi': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:1147:10: warning: unused variable 'base_offset' [-Wunused-variable] Int8 base_offset; ^ /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp /bin/rm -f libncbi_xreader_gicache-dll.so .libncbi_xreader_gicache-dll.so.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_gicache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_gicache.o gicache.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /bin/ln -f .ncbi_xreader_gicache.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.so /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.so /bin/ln -f .ncbi_xreader_gicache-dll.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -C lds -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/lds' /usr/local/bin/gmake -C lds2 -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /usr/local/bin/gmake -C blastdb -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake[5] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake[5] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -C cdd -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' /usr/local/bin/gmake -C trace -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/trace' /usr/local/bin/gmake -C patcher -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/data_loaders' /usr/local/bin/gmake -C simple -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/simple' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/simple' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/simple TMPL=xobjsimple -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/simple' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -C alnmgr -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/demo/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/demo/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT demo/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_tests.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_converters.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/aln_converters.cpp:51: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp: In member function 'void ncbi::CAlnSeqIdsExtract::operator()(const ncbi::objects::CSeq_align&, ncbi::CAlnSeqIdsExtract::TIdVec&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp:117:34: warning: typedef 'TDim' locally defined but not used [-Wunused-local-typedefs] typedef CSeq_align::TDim TDim; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_tests.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_builders.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp: In member function 'void ncbi::CAlnSeqIdsExtract::operator()(const ncbi::objects::CSeq_align&, ncbi::CAlnSeqIdsExtract::TIdVec&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp:117:34: warning: typedef 'TDim' locally defined but not used [-Wunused-local-typedefs] typedef CSeq_align::TDim TDim; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/aln_builders.cpp: In function 'void ncbi::BuildAln(ncbi::TAnchoredAlnVec&, ncbi::CAnchoredAln&, const ncbi::CAlnUserOptions&, ncbi::TAlnSeqIdIRef)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/aln_builders.cpp:551:46: warning: typedef 'TPairwiseAlnVector' locally defined but not used [-Wunused-local-typedefs] typedef CAnchoredAln::TPairwiseAlnVector TPairwiseAlnVector; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_tests.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_serial.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp: In member function 'void ncbi::CAlnSeqIdsExtract::operator()(const ncbi::objects::CSeq_align&, ncbi::CAlnSeqIdsExtract::TIdVec&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp:117:34: warning: typedef 'TDim' locally defined but not used [-Wunused-local-typedefs] typedef CSeq_align::TDim TDim; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_tests.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_serial.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/aln_generators.cpp:55: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp: In member function 'void ncbi::CAlnSeqIdsExtract::operator()(const ncbi::objects::CSeq_align&, ncbi::CAlnSeqIdsExtract::TIdVec&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp:117:34: warning: typedef 'TDim' locally defined but not used [-Wunused-local-typedefs] typedef CSeq_align::TDim TDim; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/aln_generators.cpp: In function 'void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef 'TAlnRngColl' locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmap.cpp:1469:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore > 0 && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore < 0 && ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1223:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmix.cpp:38: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: 'width2' may be used uninitialized in this function [-Wmaybe-uninitialized] int width1, width2; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnsegments.cpp:308:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (plus && prev_start_plus_len < start || ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_tests.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/aln_converters.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp: In member function 'void ncbi::CAlnSeqIdsExtract::operator()(const ncbi::objects::CSeq_align&, ncbi::CAlnSeqIdsExtract::TIdVec&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp:117:34: warning: typedef 'TDim' locally defined but not used [-Wunused-local-typedefs] typedef CSeq_align::TDim TDim; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/score_builder_base.cpp: In function 'bool ncbi::s_IsProteinToGenomic(ncbi::objects::CScope&, const ncbi::objects::CSeq_align&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:519:20: warning: unused variable 'id1' [-Wunused-variable] const CSeq_id& id1 = align.GetSeq_id(1); ^ /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -C cddalignview -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/cddalignview' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/test' /usr/local/bin/gmake -C manip -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/manip' /usr/local/bin/gmake -C cleanup -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/cleanup/test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/cleanup TMPL=cleanup -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o newcleanupp.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -C format -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format TMPL=xformat -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/feature_item.cpp:106:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/items/feature_item.hpp: In constructor 'ncbi::objects::CFeatureItemBase::CFeatureItemBase(const ncbi::objects::CMappedFeat&, ncbi::objects::CBioseqContext&, ncbi::CRef, const ncbi::objects::CSeq_loc*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/items/feature_item.hpp:136:25: warning: 'ncbi::objects::CFeatureItemBase::m_Feat' will be initialized after [-Wreorder] CMappedFeat m_Feat; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/feature_item.cpp:954:77: warning: base 'ncbi::objects::CFlatItem' [-Wreorder] (feat ? &feat.GetLocation() : NULL)) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/feature_item.cpp:948:1: warning: when initialized here [-Wreorder] CFeatureItemBase::CFeatureItemBase ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/feature_item.cpp:106:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/items/feature_item.hpp:138:30: warning: 'ncbi::objects::CFeatureItemBase::m_Feat_Tree' will be initialized after [-Wreorder] CRef m_Feat_Tree; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/items/feature_item.hpp:137:25: warning: 'ncbi::CConstRef ncbi::objects::CFeatureItemBase::m_Loc' [-Wreorder] CConstRef m_Loc; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/feature_item.cpp:948:1: warning: when initialized here [-Wreorder] CFeatureItemBase::CFeatureItemBase ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/feature_item.cpp:1711:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/primary_item.cpp:213:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/primary_item.cpp:214:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (this_start < (15 + last_stop) ) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/source_item.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/context.cpp -o context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/utils.cpp -o utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/utils.cpp: In function 'bool ncbi::objects::s_IsTagStart(const const_iterator&, const const_iterator&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/utils.cpp:1346:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx ) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/utils.cpp: In function 'bool ncbi::objects::CommentHasSuspiciousHtml(const string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/utils.cpp:1449:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( ; ii < sizeof(bad_html_strings)/sizeof(bad_html_strings[0]) ; ++ii ) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/item_formatter.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/gff3_formatter.hpp: In constructor 'ncbi::objects::CGFF3_Formatter::CGFF3_Formatter()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/gff3_formatter.hpp:67:5: warning: 'ncbi::objects::CGFFFormatter::CGFFFormatter()' is deprecated [-Wdeprecated-declarations] { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbimisc.hpp:1289:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/gff_formatter.hpp:89:26: note: declared here NCBI_DEPRECATED_CTOR(CGFFFormatter(void)); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbimisc.hpp:1289:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/item_formatter.cpp: In static member function 'static ncbi::objects::CFlatItemFormatter* ncbi::objects::CFlatItemFormatter::New(ncbi::objects::CFlatFileConfig::TFormat)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/item_formatter.cpp:93:20: warning: 'CGFFFormatter' is deprecated [-Wdeprecated-declarations] return new CGFFFormatter; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/gff3_formatter.hpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/item_formatter.cpp:58: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/gff_formatter.hpp:71:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_FORMAT_EXPORT CGFFFormatter : public CFlatItemFormatter ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/item_formatter.cpp:93:20: warning: 'ncbi::objects::CGFFFormatter::CGFFFormatter()' is deprecated [-Wdeprecated-declarations] return new CGFFFormatter; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/item_formatter.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/gff_formatter.hpp:89:26: note: declared here NCBI_DEPRECATED_CTOR(CGFFFormatter(void)); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbimisc.hpp:1289:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/item_formatter.cpp:96:20: warning: 'CGFF3_Formatter' is deprecated [-Wdeprecated-declarations] return new CGFF3_Formatter; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/item_formatter.cpp:58:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/gff3_formatter.hpp:62:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_FORMAT_EXPORT CGFF3_Formatter : public CGFFFormatter ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/item_formatter.cpp: In function 'void ncbi::objects::s_FormatCitGen(const ncbi::objects::CReferenceItem&, std::__cxx11::string&, const ncbi::objects::CFlatFileConfig&, ncbi::objects::CBioseqContext&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/item_formatter.cpp:875:70: warning: suggest parentheses around '&&' within '||' [-Wparentheses] date.IsStd() && date.GetStd().IsSetYear() && date.GetStd().GetYear() != 0) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gather_items.cpp:736:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff_gather.cpp -o gff_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff_formatter.cpp -o gff_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff_formatter.cpp: In member function 'virtual void ncbi::objects::CGFFFormatter::FormatFeature(const ncbi::objects::CFeatureItemBase&, ncbi::objects::IFlatTextOStream&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff_formatter.cpp:217:62: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::__cxx11::string&, const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&, const ncbi::objects::CCdregion&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] (s, ctx.GetHandle(), *tentative_stop, cds); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff_formatter.cpp:38:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/util/sequence.hpp:874:17: note: declared here static void TranslateCdregion (string& prot, ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff_formatter.cpp: In member function 'void ncbi::objects::CGFFFormatter::x_AddFeature(std::__cxx11::list >&, const ncbi::objects::CSeq_loc&, const string&, const string&, const string&, int, const string&, bool, ncbi::objects::CBioseqContext&, bool) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff_formatter.cpp:557:69: warning: 'static int ncbi::NStr::StringToNumeric(const string&)' is deprecated [-Wdeprecated-declarations] int n = NStr::StringToNumeric((*q)->GetVal()); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff_formatter.cpp:34: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:247:16: note: declared here static int StringToNumeric(const string& str) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff3_formatter.cpp -o gff3_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:39:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbitime.hpp:62, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff3_formatter.cpp:36: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/gff3_formatter.hpp: In constructor 'ncbi::objects::CGFF3_Formatter::CGFF3_Formatter()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/gff3_formatter.hpp:67:5: warning: 'ncbi::objects::CGFFFormatter::CGFFFormatter()' is deprecated [-Wdeprecated-declarations] { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbimisc.hpp:1289:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/gff_formatter.hpp:89:26: note: declared here NCBI_DEPRECATED_CTOR(CGFFFormatter(void)); ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbimisc.hpp:1289:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff3_formatter.cpp: At global scope: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff3_formatter.cpp:116:56: warning: 'CGFF3_Formatter' is deprecated [-Wdeprecated-declarations] IFlatTextOStream& text_os); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff3_formatter.cpp:37:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/gff3_formatter.hpp:62:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_FORMAT_EXPORT CGFF3_Formatter : public CGFFFormatter ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff3_formatter.cpp:131:33: warning: 'CGFF3_Formatter' is deprecated [-Wdeprecated-declarations] CGFF3_Formatter& m_GFF3_Fmt; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff3_formatter.cpp:37:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/gff3_formatter.hpp:62:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_FORMAT_EXPORT CGFF3_Formatter : public CGFFFormatter ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff3_formatter.cpp:139:76: warning: 'CGFF3_Formatter' is deprecated [-Wdeprecated-declarations] IFlatTextOStream& text_os) ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gff3_formatter.cpp:37:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objtools/format/gff3_formatter.hpp:62:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_FORMAT_EXPORT CGFF3_Formatter : public CGFFFormatter ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o utils.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o gff_gather.o gff_formatter.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gff3_formatter.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xformat.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -C edit -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/demo/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/demo/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT demo/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/edit/demo/Makefile gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/edit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake[4] (Makefile.edit.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/edit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit TMPL=edit -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/edit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/promote.cpp -o promote.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/autodef_available_modifier.cpp -o autodef_available_modifier.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/autodef.cpp -o autodef.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::__cxx11::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] remove_trailingX); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/promote.cpp:52:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/util/sequence.hpp:884:17: note: declared here static void TranslateCdregion(string& prot, ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/autodef_feature_clause.cpp -o autodef_feature_clause.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1444:71: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1446:74: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1469:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1471:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqGraph(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2251:12: warning: enumeration value 'e_not_set' not handled in switch [-Wswitch] switch ( dst_data.Which() ) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2251:12: warning: enumeration value 'e_Real' not handled in switch [-Wswitch] /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2251:12: warning: enumeration value 'e_Int' not handled in switch [-Wswitch] /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2288:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos >= start && pos < start + len) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2288:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos >= start && pos < start + len) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2492:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if (seg_start < cut_from) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2495:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if (seg_start >= cut_from && ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/autodef_mod_combo.cpp -o autodef_mod_combo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/autodef_source_desc.cpp -o autodef_source_desc.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/autodef_feature_clause.cpp: In member function 'virtual bool ncbi::objects::CAutoDefFeatureClause::AddGene(ncbi::objects::CAutoDefFeatureClause_Base*)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/autodef_feature_clause.cpp:1253:24: warning: unused variable 'loc_compare' [-Wunused-variable] sequence::ECompare loc_compare = gene_clause->CompareLocation(*m_ClauseLocation); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/autodef_source_group.cpp -o autodef_source_group.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/capitalization_string.cpp -o capitalization_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_available_modifier.o autodef.o autodef_feature_clause_base.o autodef_feature_clause.o autodef_mod_combo.o autodef_source_desc.o autodef_source_group.o field_handler.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o capitalization_string.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/edit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/edit/demo' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/edit' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -C validator -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/validator' /usr/local/bin/gmake -C asniotest -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/asniotest' /usr/local/bin/gmake -C align -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/align' /usr/local/bin/gmake -C seqmasks_io -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -C eutils -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/eutils' /usr/local/bin/gmake -C align_format -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/align_format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/align_format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format TMPL=align_format -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/align_format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format/align_format_util.cpp: In static member function 'static std::map, ncbi::CRef > ncbi::align_format::CAlignFormatUtil::HspListToHitMap(std::vector >, const ncbi::objects::CSeq_align_set&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format/align_format_util.cpp:1493:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= seqIdList.size()) { ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format/showalign.cpp:4409:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format/showalign.cpp:4409:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o aln_printer.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.align_format.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/align_format' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -C snputil -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/snputil' /usr/local/bin/gmake -C uudutil -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/uudutil' /usr/local/bin/gmake -C variation -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/variation' /usr/local/bin/gmake -C writers -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools/writers' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/objtools' /usr/local/bin/gmake -C ctools -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/ctools' /usr/local/bin/gmake -C algo -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/sequence/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/align/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/structure/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/ms/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/gnomon/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/align/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/gnomon/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/structure/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/sequence/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/tree/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/phy_tree/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/seqqa/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/ms/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/ms/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/cobalt/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/tree/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/text/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/seqqa/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/cobalt/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/volume_merge/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/primer/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/text/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/id_mapper/Makefile.in` /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT sequence/Makefile test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/primer/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/phy_tree/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/volume_merge/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/id_mapper/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT align/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT structure/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT ms/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT gnomon/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/sequence/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/ms/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/structure/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT tree/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/gnomon/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT phy_tree/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT seqqa/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT cobalt/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/align/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT text/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/tree/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/seqqa/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT volume_merge/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT primer/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/cobalt/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/text/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/primer/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile /usr/local/bin/gmake -C dustmask -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/dustmask' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/dustmask' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/dustmask' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_stack.hpp:111:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_Impl; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:1809:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Properties; // Per-thread properties ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:1810:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DiagBuffer; // Thread's diag buffer ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:1816:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_RequestCtx; // Request context ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:1817:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2278:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_Host; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2280:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Username; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2281:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AppName; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2283:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2284:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_DefaultHitId; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2290:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_StopWatch; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2291:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Messages; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2299:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AppLogRC; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2300:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2301:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2511:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Messages; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:950:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_StackTrace; ///< Saved stack trace ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:3732:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Encoded; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbimtx.hpp:1016:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_RW; ///< Platform-dependent RW-lock data ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:43:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiargs.hpp: In member function 'ncbi::CArgs* ncbi::CArgDescriptions::CreateArgs(TSize, TArray) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiargs.hpp:1142:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr args(new CArgs()); ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp: At global scope: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:568:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Environ; ///< Cached application env. ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:570:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DiagStream; ///< Opt., aux., see eDS_ToMemory ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:571:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Arguments; ///< Command-line arguments ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:572:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_ArgDesc; ///< Cmd.-line arg descriptions ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:573:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:229:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Converter; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:401:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr conv1 ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:404:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr conv2 ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/continfo.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiutil.hpp: At global scope: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiutil.hpp:195:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AutoMap(auto_ptr& cache, const Source& source, const ToKey& toKey) ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfob.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/memberlist.hpp:138:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByName; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfob.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/memberlist.hpp:142:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByTag; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfob.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/memberlist.hpp:145:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByOffset; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfob.hpp:134:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ContainedTypes; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:141:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_SubClasses; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/enumerated.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/enumvalues.hpp:150:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_NameToValue; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/enumerated.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/enumvalues.hpp:151:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ValueToName; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:452:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_MappingCollector; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:460:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AnnotLocsSet; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:465:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_AnnotNames; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:155:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:164:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > operator()( const sequence_type & seq, ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:214:6: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< CSymDustMasker::TMaskList > ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp: In member function 'std::auto_ptr > > ncbi::CSymDustMasker::operator()(const sequence_type&, ncbi::CSymDustMasker::size_type, ncbi::CSymDustMasker::size_type)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:218:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > res( new TMaskList ); ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp: At global scope: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:288:6: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< CSymDustMasker::TMaskList > ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp: In member function 'void ncbi::CSymDustMasker::GetMaskedLocs(ncbi::objects::CSeq_id&, const sequence_type&, std::vector >&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:299:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > res = (*this)( seq ); ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:298:59: warning: typedef 'locs_type' locally defined but not used [-Wunused-local-typedefs] typedef std::vector< CConstRef< objects::CSeq_loc > > locs_type; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp: In member function 'ncbi::CRef ncbi::CSymDustMasker::GetMaskedInts(ncbi::objects::CSeq_id&, const sequence_type&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:313:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > res = (*this)( seq ); ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -C winmask -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/winmask' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/winmask' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask TMPL=xalgowinmask -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/winmask' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_stack.hpp:111:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_Impl; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:1809:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Properties; // Per-thread properties ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:1810:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DiagBuffer; // Thread's diag buffer ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:1816:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_RequestCtx; // Request context ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:1817:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2278:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_Host; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2280:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Username; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2281:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AppName; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2283:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2284:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_DefaultHitId; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2290:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_StopWatch; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2291:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Messages; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2299:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AppLogRC; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2300:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2301:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2511:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Messages; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:950:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_StackTrace; ///< Saved stack trace ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:3732:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Encoded; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbimtx.hpp:1016:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_RW; ///< Platform-dependent RW-lock data ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:43:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiargs.hpp: In member function 'ncbi::CArgs* ncbi::CArgDescriptions::CreateArgs(TSize, TArray) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiargs.hpp:1142:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr args(new CArgs()); ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp: At global scope: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:568:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Environ; ///< Cached application env. ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:570:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DiagStream; ///< Opt., aux., see eDS_ToMemory ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:571:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Arguments; ///< Command-line arguments ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:572:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_ArgDesc; ///< Cmd.-line arg descriptions ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:573:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:229:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Converter; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:401:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr conv1 ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:404:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr conv2 ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/continfo.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiutil.hpp: At global scope: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiutil.hpp:195:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AutoMap(auto_ptr& cache, const Source& source, const ToKey& toKey) ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfob.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/memberlist.hpp:138:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByName; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfob.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/memberlist.hpp:142:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByTag; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfob.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/memberlist.hpp:145:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByOffset; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfob.hpp:134:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ContainedTypes; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:141:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_SubClasses; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/enumerated.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/enumvalues.hpp:150:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_NameToValue; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/enumerated.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/enumvalues.hpp:151:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ValueToName; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:452:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_MappingCollector; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:460:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AnnotLocsSet; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/winmask/seq_masker_window.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:465:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_AnnotNames; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp: In member function 'ncbi::CSeqMasker::TMaskList* ncbi::CSeqMasker::DoMask(const ncbi::objects::CSeqVector&, ncbi::TSeqPos, ncbi::TSeqPos) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:152:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr mask(new TMaskList); ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:169:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr window_ptr ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:111:49: warning: 'unit_size' may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/winmask/win_mask_util.cpp:37:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/util/sequence.hpp:274:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^ /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -C sequence -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/sequence' /usr/local/bin/gmake -C blast -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex_search/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex_search/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/gumbel_params/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT dbindex_search/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile /usr/local/bin/gmake -C composition_adjustment -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake[5] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:142:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:190:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:205:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -C core -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/core' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake[5] (Makefile.blast.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/core' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core TMPL=blast -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/core' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE 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-D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_stat.c:5088:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function] static double s_CalculateNormalProbability(double x_, double eps_) ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_util.c 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-std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_program.c -o blast_program.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/split_query.c -o split_query.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.blast.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -C dbindex -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake[5] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::__cxx11::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/util/sequence.hpp:274:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^ /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -C makeindex -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j5 --jobserver-auth=18,19 all gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O main.o mkindex_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o makembindex strip makembindex /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/makembindex gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -C dbindex_search -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /usr/local/bin/gmake -C api -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/api' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake[5] (Makefile.xblast.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/api' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api TMPL=xblast -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/api' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_options_cxx.cpp: In member function 'void ncbi::blast::CBlastOptionsRemote::x_AttachValue(ncbi::CRef)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:261:44: warning: typedef 'TParam' locally defined but not used [-Wunused-local-typedefs] typedef objects::CBlast4_parameter TParam; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_options_handle.cpp:98:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_options_handle.cpp:104:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/psiblast_impl.cpp: In member function 'void ncbi::blast::CPsiBlastImpl::x_ExtractQueryFromPssm()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/psiblast_impl.cpp:122:23: warning: 'CObjMgrFree_QueryFactory' is deprecated [-Wdeprecated-declarations] m_Query.Reset(new CObjMgrFree_QueryFactory(query_bioseq)); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/psiblast_impl.cpp:45:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In function 'void ncbi::blast::PsiBlastComputePssmScores(ncbi::CRef, const ncbi::blast::CBlastOptions&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:474:41: warning: 'CObjMgrFree_QueryFactory' is deprecated [-Wdeprecated-declarations] CRef seq_fetcher(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:47:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/local_search.cpp -o local_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/local_search.cpp: In member function 'virtual ncbi::CRef ncbi::blast::CLocalPssmSearch::Run()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/local_search.cpp:171:43: warning: 'CObjMgrFree_QueryFactory' is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/local_search.cpp:55:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/seedtop.cpp: In member function 'void ncbi::blast::CSeedTop::x_ParsePattern()': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/seedtop.cpp:73:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; i<(*unit).length(); ++i) { ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_aa_ungapped.c -o .core_aa_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_diagnostics.c -o .core_blast_diagnostics.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_engine.c -o .core_blast_engine.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_extend.c -o .core_blast_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_filter.c -o .core_blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_gapalign.c -o .core_blast_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_hits.c -o .core_blast_hits.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_hspstream.c -o .core_blast_hspstream.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_itree.c -o .core_blast_itree.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_kappa.c -o .core_blast_kappa.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_lookup.c -o .core_blast_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_aalookup.c -o .core_blast_aalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_aascan.c -o .core_blast_aascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_nalookup.c -o .core_blast_nalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_nascan.c -o .core_blast_nascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_message.c -o .core_blast_message.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_options.c -o .core_blast_options.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_psi.c -o .core_blast_psi.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_na_ungapped.c -o .core_na_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_psi_priv.c -o .core_blast_psi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_seg.c -o .core_blast_seg.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_seqsrc.c -o .core_blast_seqsrc.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_setup.c -o .core_blast_setup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_stat.c -o .core_blast_stat.o In file included from .core_blast_stat.c:1:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/api/../core/blast_stat.c:5088:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function] static double s_CalculateNormalProbability(double x_, double eps_) ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_traceback.c -o .core_blast_traceback.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_util.c -o .core_blast_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_gapinfo.c -o .core_gapinfo.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_greedy_align.c -o .core_greedy_align.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_hspfilter_collector.c -o .core_hspfilter_collector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_hspfilter_culling.c -o .core_hspfilter_culling.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_link_hsps.c -o .core_link_hsps.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_lookup_util.c -o .core_lookup_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_lookup_wrap.c -o .core_lookup_wrap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_ncbi_std.c -o .core_ncbi_std.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_ncbi_math.c -o .core_ncbi_math.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_encoding.c -o .core_blast_encoding.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_pattern.c -o .core_pattern.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_phi_extend.c -o .core_phi_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_phi_gapalign.c -o .core_phi_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_phi_lookup.c -o .core_phi_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_parameters.c -o .core_blast_parameters.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_posit.c -o .core_blast_posit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_program.c -o .core_blast_program.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_query_info.c -o .core_blast_query_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_tune.c -o .core_blast_tune.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_sw.c -o .core_blast_sw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_dynarray.c -o .core_blast_dynarray.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_split_query.c -o .core_split_query.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_gencode_singleton.c -o .core_gencode_singleton.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_index_ungapped.c -o .core_index_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xblast.dep rm .core_blast_nascan.c .core_blast_diagnostics.c .core_blast_posit.c .core_blast_sw.c .core_split_query.c .core_hspfilter_collector.c .core_blast_query_info.c .core_blast_traceback_mt_priv.c .core_blast_util.c .core_blast_aascan.c .core_blast_dynarray.c .core_na_ungapped.c .core_blast_setup.c .core_blast_hits.c .core_blast_traceback.c .core_matrix_freq_ratios.c .core_phi_extend.c .core_link_hsps.c .core_phi_lookup.c .core_blast_extend.c .core_aa_ungapped.c .core_blast_lookup.c .core_ncbi_std.c .core_blast_psi.c .core_phi_gapalign.c .core_blast_encoding.c .core_blast_gapalign.c .core_pattern.c .core_blast_tune.c .core_blast_hspstream.c .core_blast_psi_priv.c .core_gencode_singleton.c .core_blast_kappa.c .core_blast_filter.c .core_blast_engine.c .core_index_ungapped.c .core_blast_message.c .core_blast_nalookup.c .core_blast_options.c .core_blast_seqsrc.c .core_blast_stat.c .core_blast_parameters.c .core_hspfilter_culling.c .core_blast_aalookup.c .core_ncbi_math.c .core_greedy_align.c .core_blast_itree.c .core_blast_hspstream_mt_utils.c .core_hspfilter_besthit.c .core_gapinfo.c .core_lookup_util.c .core_blast_seg.c .core_lookup_wrap.c .core_blast_program.c gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -C format -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake[5] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format TMPL=xblastformat -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/data4xmlformat.cpp:41:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/data4xmlformat.cpp:41: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/blast_format.cpp:52:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/blast_format.cpp:41: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/blast_format.cpp:54:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/blast_format.cpp:41: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/blast_format.cpp: In member function 'void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/blast_format.cpp:470:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/data4xml2format.cpp:40:0: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/format/data4xml2format.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/data4xml2format.cpp:40: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/data4xml2format.cpp: In member function 'virtual int ncbi::CCmdLineBlastXML2ReportData::GetQueryGeneticCode() const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/format/data4xml2format.cpp:343:11: warning: unused variable 'blast_prog' [-Wunused-variable] EProgram blast_prog = GetBlastTask(); ^ /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -C blastinput -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake[5] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/blast_args.cpp: In member function 'virtual void ncbi::blast::CFormattingArgs::SetArgumentDescriptions(ncbi::CArgDescriptions&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/blast_args.cpp:1969:79: warning: 'static std::__cxx11::string ncbi::NStr::IntToString(long unsigned int, ncbi::NStr::TNumToStringFlags, int)' is deprecated [-Wdeprecated-declarations] "Default = `"+ NStr::IntToString(align_format::kDfltLineLength) + "'", ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistd.hpp:37:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbicntr.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiobj.hpp:39, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/version.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/blast/api/version.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/blast_args.cpp:44: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:4605:8: note: declared here string NStr::IntToString(unsigned long value, ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.blastinput.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -C igblast -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake[5] (Makefile.igblast.lib): Nothing to be done for `export-headers'. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/igblast TMPL=igblast -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.igblast.dep gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -C gumbel_params -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /usr/local/bin/gmake -C unit_tests -w -j5 --jobserver-auth=14,15 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -C blast_format -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /usr/local/bin/gmake -C blastdb -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /usr/local/bin/gmake -C seqdb_reader -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /usr/local/bin/gmake -C api -w -j5 --jobserver-auth=16,17 all_r || exit 5 gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/blast' /usr/local/bin/gmake -C segmask -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/segmask' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/segmask' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/segmask TMPL=xalgosegmask -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/segmask' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -C align -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/align' /usr/local/bin/gmake -C structure -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/structure' /usr/local/bin/gmake -C ms -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/ms' /usr/local/bin/gmake -C gnomon -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/gnomon' /usr/local/bin/gmake -C tree -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/tree' /usr/local/bin/gmake -C phy_tree -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/phy_tree' /usr/local/bin/gmake -C seqqa -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/seqqa' /usr/local/bin/gmake -C cobalt -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/cobalt' /usr/local/bin/gmake -C text -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/text' /usr/local/bin/gmake -C volume_merge -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/volume_merge' /usr/local/bin/gmake -C primer -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/primer' /usr/local/bin/gmake -C id_mapper -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/algo' /usr/local/bin/gmake -C misc -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/misc' /usr/local/bin/gmake -C sra -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/sra' /usr/local/bin/gmake -C gui -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/gui' /usr/local/bin/gmake -C app -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asn2asn/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asn2fasta/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asn2flat/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asnval/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asn_cleanup/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asn2asn/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asn2flat/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/id1_fetch/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/convert_seq/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asnval/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asnval/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/id1_fetch/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/id1_fetch/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asn2fasta/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/nmer_repeats/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asn_cleanup/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/asn_cleanup/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/convert_seq/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/convert_seq/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/objmgr/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/gi2taxid/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/netschedule/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/nmer_repeats/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/nmer_repeats/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/grid/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/gi2taxid/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/gi2taxid/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/objmgr/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/objmgr/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/netstorage/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/netschedule/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/netschedule/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/igblast/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/igblast/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/igblast/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/netstorage/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/netstorage/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/vecscreen/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/agpconvert/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/id2_fetch/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/agp_validate/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/vecscreen/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/vecscreen/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/grid/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/grid/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/agpconvert/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/agpconvert/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/objextract/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/lds_indexer/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/bdb_env_keeper/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/agp_validate/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/agp_validate/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/objextract/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/objextract/Makefile.in /bin/mkdir -p `/usr/bin/dirname /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/nw_aligner/Makefile.in` test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/id2_fetch/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/id2_fetch/Makefile.in test -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/lds_indexer/Makefile.in || /bin/cp -p /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.skel 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biosample_chk/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT gap_stats/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/streamtest/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT table2asn/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/lds2_indexer/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT srcchk/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/discrep_report/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/biosample_chk/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT split_cache/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/gap_stats/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT wig2table/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT netcache/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/srcchk/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/table2asn/Makefile /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT rmblastn/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/split_cache/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/netcache/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/wig2table/Makefile config.status: creating /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/rmblastn/Makefile /usr/local/bin/gmake -C asn2asn -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/asn2asn' /usr/local/bin/gmake -C asn2fasta -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/asn2fasta' /usr/local/bin/gmake -C asn2flat -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/asn2flat' /usr/local/bin/gmake -C asnval -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/asnval' /usr/local/bin/gmake -C asn_cleanup -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/asn_cleanup' /usr/local/bin/gmake -C id1_fetch -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/id1_fetch' /usr/local/bin/gmake -C blast -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/legacy_blast.pl /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/legacy_blast.pl /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/update_blastdb.pl /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/update_blastdb.pl /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast TMPL=blast_app_util -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast TMPL=blastp -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastp_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o blastp strip blastp /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f blastp /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/blastp gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast TMPL=blastn -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastn_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o blastn strip blastn /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f blastn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/blastn gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast TMPL=blastx -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastx_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o blastx strip blastx /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f blastx /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/blastx gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast TMPL=tblastn -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O tblastn_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o tblastn strip tblastn /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f tblastn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/tblastn gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast TMPL=tblastx -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O tblastx_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o tblastx strip tblastx /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f tblastx /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/tblastx gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast TMPL=psiblast -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O psiblast_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o psiblast strip psiblast /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f psiblast /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/psiblast gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast TMPL=rpsblast -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O rpsblast_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o rpsblast strip rpsblast /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f rpsblast /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/rpsblast gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast TMPL=rpstblastn -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O rpstblastn_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o rpstblastn strip rpstblastn /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f rpstblastn /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/rpstblastn gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast TMPL=blast_formatter -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blast_formatter.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o blast_formatter strip blast_formatter /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f blast_formatter /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/blast_formatter gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast TMPL=deltablast -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O deltablast_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o deltablast strip deltablast /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f deltablast /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/deltablast gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast TMPL=seedtop -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O seedtop_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o seedtop strip seedtop /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f seedtop /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/seedtop gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -C convert_seq -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/convert_seq' /usr/local/bin/gmake -C nmer_repeats -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/nmer_repeats' /usr/local/bin/gmake -C objmgr -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/objmgr' /usr/local/bin/gmake -C gi2taxid -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/gi2taxid' /usr/local/bin/gmake -C netschedule -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/netschedule' /usr/local/bin/gmake -C grid -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/grid' /usr/local/bin/gmake -C netstorage -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/netstorage' /usr/local/bin/gmake -C igblast -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/igblast' /usr/local/bin/gmake -C winmasker -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/winmasker' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker -w -j5 --jobserver-auth=16,17 all gmake[6]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/winmasker' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py gmake[6]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker TMPL=winmasker -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_stack.hpp:111:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_Impl; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:1809:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Properties; // Per-thread properties ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:1810:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DiagBuffer; // Thread's diag buffer ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:1816:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_RequestCtx; // Request context ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:1817:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2278:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_Host; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2280:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Username; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2281:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AppName; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2283:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2284:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_DefaultHitId; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2290:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_StopWatch; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2291:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Messages; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2299:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AppLogRC; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2300:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2301:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbidiag.hpp:2511:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Messages; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/tempstr.hpp:38:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiexpt.hpp:950:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_StackTrace; ///< Saved stack trace ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:45:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbistr.hpp:3732:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Encoded; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbimtx.hpp:1016:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_RW; ///< Platform-dependent RW-lock data ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:43:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiargs.hpp: In member function 'ncbi::CArgs* ncbi::CArgDescriptions::CreateArgs(TSize, TArray) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiargs.hpp:1142:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr args(new CArgs()); ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp: At global scope: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:568:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Environ; ///< Cached application env. ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:570:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DiagStream; ///< Opt., aux., see eDS_ToMemory ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:571:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Arguments; ///< Command-line arguments ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:572:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_ArgDesc; ///< Cmd.-line arg descriptions ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiapp.hpp:573:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:229:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Converter; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:401:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr conv1 ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_map.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/tse_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/bioseq_handle.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/util/static_set.hpp:404:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr conv2 ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/continfo.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:38, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiutil.hpp: At global scope: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/corelib/ncbiutil.hpp:195:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AutoMap(auto_ptr& cache, const Source& source, const ToKey& toKey) ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfob.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/memberlist.hpp:138:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByName; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfob.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/memberlist.hpp:142:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByTag; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfob.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/memberlist.hpp:145:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByOffset; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfob.hpp:134:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ContainedTypes; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:41:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/classinfo.hpp:141:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_SubClasses; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/enumerated.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/enumvalues.hpp:150:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_NameToValue; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/enumerated.hpp:36:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objectinfo.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/impl/objecttype.hpp:36, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/objhook.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objects/seqres/Seq_graph.hpp:46, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_object.hpp:41, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:42, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/serial/enumvalues.hpp:151:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ValueToName; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:452:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_MappingCollector; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:460:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AnnotLocsSet; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/scope.hpp:51, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/seq_vector.hpp:37, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:50, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/objmgr/impl/annot_collector.hpp:465:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_AnnotNames; ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:155:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:164:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > operator()( const sequence_type & seq, ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp: In member function 'ncbi::CSDustMasker::TMaskList* ncbi::CSDustMasker::operator()(const ncbi::objects::CSeqVector&, const TMaskList&)': /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:104:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > result = duster_( ^ In file included from /usr/include/c++/5.0/memory:81:0, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include/algo/dustmask/symdust.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5.0/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O main.o win_mask_app.o win_mask_sdust_masker.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqdb -lblastdb -lseqmasks_io -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o windowmasker strip windowmasker /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f windowmasker /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/windowmasker gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -C dustmasker -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/dustmasker' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/dustmasker' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/dustmasker TMPL=dustmasker -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/dustmasker' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O main.o dust_mask_app.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o dustmasker strip dustmasker /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f dustmasker /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/dustmasker gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/dustmasker' /usr/local/bin/gmake -C segmasker -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/segmasker' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/segmasker' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/segmasker TMPL=segmasker -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/segmasker' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O segmasker.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lxobjsimple-static -lseqmasks_io-static -lxalgosegmask-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o segmasker strip segmasker /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/segmasker gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/segmasker' /usr/local/bin/gmake -C blastdb -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb TMPL=blastdbcmd -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdbcmd.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o blastdbcmd strip blastdbcmd /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcmd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/blastdbcmd gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb TMPL=makeblastdb -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O makeblastdb.o masked_range_set.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lwritedb-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o makeblastdb strip makeblastdb /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f makeblastdb /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/makeblastdb gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdb_aliastool.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o blastdb_aliastool strip blastdb_aliastool /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/blastdb_aliastool gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb TMPL=blastdbcheck -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdbcheck.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o blastdbcheck strip blastdbcheck /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcheck /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/blastdbcheck gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb TMPL=convert2blastmask -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O convert2blastmask.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lseqmasks_io -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o convert2blastmask strip convert2blastmask /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f convert2blastmask /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/convert2blastmask gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb TMPL=blastdbcp -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdbcp.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -ldbapi_driver -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxconnext -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -lm -o blastdbcp strip blastdbcp /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcp /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/blastdbcp gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb TMPL=makeprofiledb -w -j5 --jobserver-auth=14,15 all gmake[5]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc -I/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O makeprofiledb.o -L/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lwritedb-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -lm -o makeprofiledb strip makeprofiledb /bin/sh /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin /bin/ln -f makeprofiledb /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/makeprofiledb gmake[5]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -C vecscreen -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/vecscreen' /usr/local/bin/gmake -C agpconvert -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/agpconvert' /usr/local/bin/gmake -C id2_fetch -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/id2_fetch' /usr/local/bin/gmake -C agp_validate -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/agp_validate' /usr/local/bin/gmake -C objextract -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/objextract' /usr/local/bin/gmake -C lds_indexer -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/lds_indexer' /usr/local/bin/gmake -C bdb_env_keeper -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/bdb_env_keeper' /usr/local/bin/gmake -C nw_aligner -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/nw_aligner' /usr/local/bin/gmake -C speedtest -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/speedtest' /usr/local/bin/gmake -C idmapper -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/idmapper' /usr/local/bin/gmake -C formatguess -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/formatguess' /usr/local/bin/gmake -C multireader -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/multireader' /usr/local/bin/gmake -C read_blast_result -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/read_blast_result' /usr/local/bin/gmake -C splign -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/splign' /usr/local/bin/gmake -C hfilter -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/hfilter' /usr/local/bin/gmake -C annotwriter -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/annotwriter' /usr/local/bin/gmake -C compart -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/compart' /usr/local/bin/gmake -C streamtest -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/streamtest' /usr/local/bin/gmake -C lds2_indexer -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/lds2_indexer' /usr/local/bin/gmake -C discrep_report -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/discrep_report' /usr/local/bin/gmake -C biosample_chk -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/biosample_chk' /usr/local/bin/gmake -C gap_stats -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/gap_stats' /usr/local/bin/gmake -C table2asn -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/table2asn' /usr/local/bin/gmake -C srcchk -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/srcchk' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C split_cache -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C wig2table -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C netcache -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C rmblastn -w -j5 --jobserver-auth=12,13 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app/rmblastn' gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/app' /usr/local/bin/gmake -C sample -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/sample' /usr/local/bin/gmake -C internal -w -j5 --jobserver-auth=10,11 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. gmake[3]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build/internal' gmake[2]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/build' gmake[1]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++' =========================================================================== =================================================== ===> ncbi-blast+-2.2.30_3 depends on package: p5-List-MoreUtils>=0 - not found ===> Installing existing package /packages/All/p5-List-MoreUtils-0.416.txz Installing p5-List-MoreUtils-0.416... `-- Installing p5-Exporter-Tiny-0.042_1... `-- Extracting p5-Exporter-Tiny-0.042_1: ......... done `-- Installing p5-XSLoader-0.22... `-- Extracting p5-XSLoader-0.22: ....... done Extracting p5-List-MoreUtils-0.416: .......... done ===> ncbi-blast+-2.2.30_3 depends on package: p5-List-MoreUtils>=0 - found ===> Returning to build of ncbi-blast+-2.2.30_3 ===> ncbi-blast+-2.2.30_3 depends on file: /usr/local/bin/python2.7 - found ===> ncbi-blast+-2.2.30_3 depends on package: perl5>=5.20<5.21 - found =========================================================================== =================================================== ===> Staging for ncbi-blast+-2.2.30_3 ===> Generating temporary packing list gmake[1]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++' if test -d /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/gbench; then \ gmake -w install-gbench; \ else \ gmake -w install-toolkit; \ fi gmake[2]: Entering directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++' /bin/rm -rf /wrkdirs/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ /usr/bin/install -c -d /wrkdirs/biology/ncbi-blast+/stage/usr/local/bin /wrkdirs/biology/ncbi-blast+/stage/usr/local/lib /wrkdirs/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ /usr/bin/install -c /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/bin/* /wrkdirs/biology/ncbi-blast+/stage/usr/local/bin /usr/bin/install -c -m 644 /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/*.* /wrkdirs/biology/ncbi-blast+/stage/usr/local/lib if test -d /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/ncbi; then \ cp -pPR /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/lib/ncbi /wrkdirs/biology/ncbi-blast+/stage/usr/local/lib/; \ fi rm -f /wrkdirs/biology/ncbi-blast+/stage/usr/local/lib/lib*-static.a cd /wrkdirs/biology/ncbi-blast+/stage/usr/local/lib && \ for x in *.a; do \ /bin/ln -s "$x" "`/usr/bin/basename \"$x\" .a`-static.a"; \ done cd /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/include && find * -name CVS -prune -o -print |\ cpio -pd /wrkdirs/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ 49133 blocks /usr/bin/install -c -m 644 /wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++/ReleaseMT/inc/* /wrkdirs/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ gmake[2]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++' gmake[1]: Leaving directory '/wrkdirs/biology/ncbi-blast+/ncbi-blast-2.2.30+-src/c++' /usr/bin/strip /wrkdirs/biology/ncbi-blast+/stage/usr/local/lib/*.so ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for ncbi-blast+-2.2.30_3 file sizes/checksums [3897]: .......... done packing files [3897]: .......... done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for ncbi-blast+-2.2.30_3 build of biology/ncbi-blast+ ended at Sat Oct 8 15:13:25 PDT 2016 build time: 02:02:28