=> Building math/R-cran-nloptr build started at Fri Oct 7 15:10:04 PDT 2016 port directory: /usr/ports/math/R-cran-nloptr building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: tota@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/Release46-default/ref/../09//usr/ports/math/R-cran-nloptr/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400600 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release46-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-cran-nloptr-1.0.4 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release46-default/ref/.p/pool MASTERNAME=Release46-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/math/R-cran-nloptr XDG_CONFIG_HOME=/wrkdirs/math/R-cran-nloptr HOME=/wrkdirs/math/R-cran-nloptr TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/math/R-cran-nloptr XDG_CONFIG_HOME=/wrkdirs/math/R-cran-nloptr HOME=/wrkdirs/math/R-cran-nloptr TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/nloptr OSREL=4.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/nloptr" EXAMPLESDIR="share/examples/nloptr" DATADIR="share/nloptr" WWWDIR="www/nloptr" ETCDIR="etc/nloptr" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/nloptr DOCSDIR=/usr/local/share/doc/nloptr EXAMPLESDIR=/usr/local/share/examples/nloptr WWWDIR=/usr/local/www/nloptr ETCDIR=/usr/local/etc/nloptr --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License LGPL3 accepted by the user =========================================================================== =================================================== ===> R-cran-nloptr-1.0.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> R-cran-nloptr-1.0.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-nloptr-1.0.4 =========================================================================== =================================================== =========================================================================== =================================================== ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by R-cran-nloptr-1.0.4 for building =========================================================================== =================================================== ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by R-cran-nloptr-1.0.4 for building => SHA256 Checksum OK for nloptr_1.0.4.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by R-cran-nloptr-1.0.4 for building ===> Extracting for R-cran-nloptr-1.0.4 => SHA256 Checksum OK for nloptr_1.0.4.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for R-cran-nloptr-1.0.4 =========================================================================== =================================================== ===> R-cran-nloptr-1.0.4 depends on file: /usr/local/bin/R - not found ===> Installing existing package /packages/All/R-3.3.1_4.txz Installing R-3.3.1_4... `-- Installing indexinfo-0.2.5... `-- Extracting indexinfo-0.2.5: .... done `-- Installing 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Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. | `-- Extracting cups-2.1.4: .......... done | `-- Installing jbig2dec-0.13... | `-- Extracting jbig2dec-0.13: .......... done | `-- Installing gsfonts-8.11_6... | `-- Extracting gsfonts-8.11_6: .......... done | `-- Installing jpeg-turbo-1.4.2... | `-- Extracting jpeg-turbo-1.4.2: .......... done | `-- Installing lcms2-2.7_2... | | `-- Installing tiff-4.0.6_2... | | `-- Installing jbigkit-2.1_1... | | `-- Extracting jbigkit-2.1_1: .......... done | | `-- Extracting tiff-4.0.6_2: .......... done | `-- Extracting lcms2-2.7_2: .......... done `-- Extracting ghostscript9-agpl-base-9.16_5: .......... done `-- Installing libXScrnSaver-1.2.2_3... | `-- Installing scrnsaverproto-1.2.2... | `-- Extracting scrnsaverproto-1.2.2: ... done `-- Extracting libXScrnSaver-1.2.2_3: .......... done `-- Installing tk86-8.6.6... | `-- Installing tcl86-8.6.6... | `-- Extracting tcl86-8.6.6: .......... done `-- Extracting tk86-8.6.6: .......... done `-- Installing libXmu-1.1.2_3,1... `-- Extracting libXmu-1.1.2_3,1: .......... done Extracting R-3.3.1_4: .......... done Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from perl5-5.20.3_15: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from dejavu-2.35: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from ca_root_nss-3.27: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from gcc6-6.2.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc6 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from trousers-0.3.13_1: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from ghostscript9-agpl-base-9.16_5: Note: in order to use the script "dvipdf", dvips must be installed. This program is provided by another package print/tex-dvipsk. FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init have to be configured if you want to use FAPI feature. ===> R-cran-nloptr-1.0.4 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-nloptr-1.0.4 ===> R-cran-nloptr-1.0.4 depends on package: pkgconf>=0.9.10 - found =========================================================================== =================================================== ===> R-cran-nloptr-1.0.4 depends on shared library: libnlopt.so - not found ===> Installing existing package /packages/All/nlopt-2.4.2_1.txz Installing nlopt-2.4.2_1... `-- Installing py27-numpy-1.11.1,1... | `-- Installing py27-setuptools27-23.1.0... | `-- Extracting py27-setuptools27-23.1.0: .......... done | `-- Installing lapack-3.5.0... | | `-- Installing blas-3.5.0_3... | | `-- Installing gcc5-5.4.0... | | `-- Extracting gcc5-5.4.0: .......... done | | `-- Extracting blas-3.5.0_3: ....... done | `-- Extracting lapack-3.5.0: .......... done | `-- Installing openblas-0.2.18_1,1... | `-- Extracting openblas-0.2.18_1,1: ......... done | `-- Installing suitesparse-4.0.2_4... | `-- Extracting suitesparse-4.0.2_4: .......... done | `-- Installing cblas-1.0_4... | `-- Extracting cblas-1.0_4: ......... done `-- Extracting py27-numpy-1.11.1,1: .......... done `-- Installing guile2-2.0.11_3... | `-- Installing libltdl-2.4.6... | `-- Extracting libltdl-2.4.6: .......... done | `-- Installing boehm-gc-threaded-7.6.0_1... | | `-- Installing boehm-gc-7.6.0... | | `-- Extracting boehm-gc-7.6.0: .......... done | `-- Extracting boehm-gc-threaded-7.6.0_1: .......... done | `-- Installing libunistring-0.9.6... | `-- Extracting libunistring-0.9.6: .......... done `-- Extracting guile2-2.0.11_3: .......... done Extracting nlopt-2.4.2_1: .......... done Message from gcc5-5.4.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_4: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> R-cran-nloptr-1.0.4 depends on shared library: libnlopt.so - found (/usr/local/lib/libnlopt.so) ===> Returning to build of R-cran-nloptr-1.0.4 =========================================================================== =================================================== ===> Configuring for R-cran-nloptr-1.0.4 =========================================================================== =================================================== =========================================================================== =================================================== ===> R-cran-nloptr-1.0.4 depends on file: /usr/local/bin/R - found =========================================================================== =================================================== ===> Staging for R-cran-nloptr-1.0.4 ===> Generating temporary packing list * installing *source* package 'nloptr' ... file 'configure' has the wrong MD5 checksum checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking how to run the C++ preprocessor... c++ -E checking whether we are using the GNU C++ compiler... (cached) yes checking whether c++ accepts -g... (cached) yes checking for pkg-config... yes configure: Now testing for NLopt header file. checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking nlopt.h usability... yes checking nlopt.h presence... yes checking for nlopt.h... yes configure: Suitable NLopt library found. configure: creating ./config.status config.status: creating src/Makevars ** libs g++6 -I/usr/local/lib/R/include -DNDEBUG -DLIBICONV_PLUG -isystem /usr/local/include -I/usr/local/include -fpic -pipe -DLIBICONV_PLUG -isystem /usr/local/include -O2 -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -Wl,-rpath=/usr/local/lib/gcc6 -c dummy.cpp -o dummy.o gcc6 -I/usr/local/lib/R/include -DNDEBUG -DLIBICONV_PLUG -isystem /usr/local/include -I/usr/local/include -I/usr/local/include -fpic -pipe -DLIBICONV_PLUG -isystem /usr/local/include -O2 -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -c nloptr.c -o nloptr.o g++6 -shared -L/usr/local/lib/R/lib -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -L/usr/local/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -o nloptr.so dummy.o nloptr.o -L/usr/local/lib -lnlopt -lm -L/usr/local/lib/R/lib -lR installing to /wrkdirs/math/R-cran-nloptr/stage/usr/local/lib/R/library/nloptr/libs ** R ** inst ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (nloptr) ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for R-cran-nloptr-1.0.4 file sizes/checksums [39]: . done packing files [39]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for R-cran-nloptr-1.0.4 build of math/R-cran-nloptr ended at Fri Oct 7 15:11:47 PDT 2016 build time: 00:01:43