=> Building science/py-DendroPy build started at Sun Oct 9 12:20:14 PDT 2016 port directory: /usr/ports/science/py-DendroPy building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: cs@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/Release46-default/ref/../10//usr/ports/science/py-DendroPy/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400600 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release46-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-DendroPy-4.1.0 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release46-default/ref/.p/pool MASTERNAME=Release46-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/science/py-DendroPy XDG_CONFIG_HOME=/wrkdirs/science/py-DendroPy HOME=/wrkdirs/science/py-DendroPy TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/science/py-DendroPy XDG_CONFIG_HOME=/wrkdirs/science/py-DendroPy HOME=/wrkdirs/science/py-DendroPy TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly4 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=4.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/DendroPy" EXAMPLESDIR="share/examples/DendroPy" DATADIR="share/DendroPy" WWWDIR="www/DendroPy" ETCDIR="etc/DendroPy" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/DendroPy DOCSDIR=/usr/local/share/doc/DendroPy EXAMPLESDIR=/usr/local/share/examples/DendroPy WWWDIR=/usr/local/www/DendroPy ETCDIR=/usr/local/etc/DendroPy --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===> py27-DendroPy-4.1.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> py27-DendroPy-4.1.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-DendroPy-4.1.0 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-DendroPy-4.1.0 for building =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-DendroPy-4.1.0 for building => SHA256 Checksum OK for DendroPy-4.1.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-DendroPy-4.1.0 for building ===> Extracting for py27-DendroPy-4.1.0 => SHA256 Checksum OK for DendroPy-4.1.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for py27-DendroPy-4.1.0 =========================================================================== =================================================== ===> py27-DendroPy-4.1.0 depends on package: py27-setuptools27>0 - not found ===> Installing existing package /packages/All/py27-setuptools27-23.1.0.txz Installing py27-setuptools27-23.1.0... `-- Installing python27-2.7.12... | `-- Installing expat-2.2.0... | `-- Extracting expat-2.2.0: .......... done | `-- Installing readline-6.3.8... | | `-- Installing indexinfo-0.2.5... | | `-- Extracting indexinfo-0.2.5: .... done | | `-- Installing ncurses-6.0_5... | | `-- Extracting ncurses-6.0_5: .......... done | `-- Extracting readline-6.3.8: .......... done | `-- Installing libffi-3.2.1... | `-- Extracting libffi-3.2.1: .......... done | `-- Installing gettext-runtime-0.19.8.1... | `-- Extracting gettext-runtime-0.19.8.1: .......... done `-- Extracting python27-2.7.12: .......... done Extracting py27-setuptools27-23.1.0: .......... done Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> py27-DendroPy-4.1.0 depends on package: py27-setuptools27>0 - found ===> Returning to build of py27-DendroPy-4.1.0 ===> py27-DendroPy-4.1.0 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for py27-DendroPy-4.1.0 -setup.py: None -setup.py: using distutils -setup.py: using canned package list -setup.py: packages identified: dendropy : dendropy dendropy.calculate : dendropy/calculate dendropy.dataio : dendropy/dataio dendropy.datamodel : dendropy/datamodel dendropy.interop : dendropy/interop dendropy.legacy : dendropy/legacy dendropy.mathlib : dendropy/mathlib dendropy.model : dendropy/model dendropy.simulate : dendropy/simulate dendropy.test : dendropy/test dendropy.utility : dendropy/utility dendropy.utility.libexec : dendropy/utility/libexec -setup.py: scripts identified: applications/sumtrees/sumtrees.py -setup.py: setuptools command extensions are available coverage could not be imported: test coverage analysis not available -setup.py: coverage analysis not available DendroPy version : DendroPy 4.1.0 DendroPy location : /wrkdirs/science/py-DendroPy/DendroPy-4.1.0/dendropy Python version : 2.7.12 (default, Oct 7 2016, 17:14:37) [GCC 5.3.1 [DragonFly] Release/2015-12-04] Python executable : /usr/local/bin/python2.7 Python site packages : ['/usr/local/lib/python2.7/site-packages', '/usr/local/lib/site-python'] running config =========================================================================== =================================================== ===> Building for py27-DendroPy-4.1.0 -setup.py: None -setup.py: using distutils -setup.py: using canned package list -setup.py: packages identified: dendropy : dendropy dendropy.calculate : dendropy/calculate dendropy.dataio : dendropy/dataio dendropy.datamodel : dendropy/datamodel dendropy.interop : dendropy/interop dendropy.legacy : dendropy/legacy dendropy.mathlib : dendropy/mathlib dendropy.model : dendropy/model dendropy.simulate : dendropy/simulate dendropy.test : dendropy/test dendropy.utility : dendropy/utility dendropy.utility.libexec : dendropy/utility/libexec -setup.py: scripts identified: applications/sumtrees/sumtrees.py -setup.py: setuptools command extensions are available coverage could not be imported: test coverage analysis not available -setup.py: coverage analysis not available DendroPy version : DendroPy 4.1.0 DendroPy location : /wrkdirs/science/py-DendroPy/DendroPy-4.1.0/dendropy Python version : 2.7.12 (default, Oct 7 2016, 17:14:37) [GCC 5.3.1 [DragonFly] Release/2015-12-04] Python executable : /usr/local/bin/python2.7 Python site packages : ['/usr/local/lib/python2.7/site-packages', '/usr/local/lib/site-python'] running build running build_py creating build creating build/lib creating build/lib/dendropy copying dendropy/__main__.py -> build/lib/dendropy copying dendropy/__init__.py -> build/lib/dendropy creating build/lib/dendropy/calculate copying dendropy/calculate/__init__.py -> build/lib/dendropy/calculate copying dendropy/calculate/treescore.py -> build/lib/dendropy/calculate copying dendropy/calculate/mathfn.py -> build/lib/dendropy/calculate copying dendropy/calculate/treecompare.py -> build/lib/dendropy/calculate copying dendropy/calculate/treemeasure.py -> build/lib/dendropy/calculate copying dendropy/calculate/treesum.py -> build/lib/dendropy/calculate copying dendropy/calculate/probability.py -> build/lib/dendropy/calculate copying dendropy/calculate/combinatorics.py -> build/lib/dendropy/calculate copying dendropy/calculate/phylogeneticdistance.py -> build/lib/dendropy/calculate copying dendropy/calculate/popgenstat.py -> build/lib/dendropy/calculate copying dendropy/calculate/statistics.py -> build/lib/dendropy/calculate creating build/lib/dendropy/dataio copying dendropy/dataio/nexusprocessing.py -> build/lib/dendropy/dataio copying dendropy/dataio/newick.py -> build/lib/dendropy/dataio copying dendropy/dataio/phylipwriter.py -> build/lib/dendropy/dataio copying dendropy/dataio/nexmlreader.py -> build/lib/dendropy/dataio copying dendropy/dataio/ioservice.py -> build/lib/dendropy/dataio copying dendropy/dataio/newickreader.py -> build/lib/dendropy/dataio copying dendropy/dataio/nexmlyielder.py -> build/lib/dendropy/dataio copying dendropy/dataio/nexusreader.py -> build/lib/dendropy/dataio copying dendropy/dataio/xmlprocessing.py -> build/lib/dendropy/dataio copying dendropy/dataio/fastareader.py -> build/lib/dendropy/dataio copying dendropy/dataio/nexusyielder.py -> build/lib/dendropy/dataio copying dendropy/dataio/phylipreader.py -> build/lib/dendropy/dataio copying dendropy/dataio/tokenizer.py -> build/lib/dendropy/dataio copying dendropy/dataio/nexmlwriter.py -> build/lib/dendropy/dataio copying dendropy/dataio/newickwriter.py -> build/lib/dendropy/dataio copying dendropy/dataio/nexuswriter.py -> build/lib/dendropy/dataio copying dendropy/dataio/newickyielder.py -> build/lib/dendropy/dataio copying dendropy/dataio/__init__.py -> build/lib/dendropy/dataio copying dendropy/dataio/fastawriter.py -> build/lib/dendropy/dataio creating build/lib/dendropy/datamodel copying dendropy/datamodel/__init__.py -> build/lib/dendropy/datamodel copying dendropy/datamodel/treecollectionmodel.py -> build/lib/dendropy/datamodel copying dendropy/datamodel/charstatemodel.py -> build/lib/dendropy/datamodel copying dendropy/datamodel/taxonmodel.py -> build/lib/dendropy/datamodel copying dendropy/datamodel/treemodel.py -> build/lib/dendropy/datamodel copying dendropy/datamodel/charmatrixmodel.py -> build/lib/dendropy/datamodel copying dendropy/datamodel/basemodel.py -> build/lib/dendropy/datamodel copying dendropy/datamodel/datasetmodel.py -> build/lib/dendropy/datamodel creating build/lib/dendropy/interop copying dendropy/interop/__init__.py -> build/lib/dendropy/interop copying dendropy/interop/gbif.py -> build/lib/dendropy/interop copying dendropy/interop/muscle.py -> build/lib/dendropy/interop copying dendropy/interop/biopython.py -> build/lib/dendropy/interop copying dendropy/interop/genbank.py -> build/lib/dendropy/interop copying dendropy/interop/seqgen.py -> build/lib/dendropy/interop copying dendropy/interop/entrez.py -> build/lib/dendropy/interop copying dendropy/interop/ete.py -> build/lib/dendropy/interop copying dendropy/interop/paup.py -> build/lib/dendropy/interop copying dendropy/interop/raxml.py -> build/lib/dendropy/interop copying dendropy/interop/rstats.py -> build/lib/dendropy/interop copying dendropy/interop/ape.py -> build/lib/dendropy/interop creating build/lib/dendropy/legacy copying dendropy/legacy/continuous.py -> build/lib/dendropy/legacy copying dendropy/legacy/popgensim.py -> build/lib/dendropy/legacy copying dendropy/legacy/treemanip.py -> build/lib/dendropy/legacy copying dendropy/legacy/seqsim.py -> build/lib/dendropy/legacy copying dendropy/legacy/seqmodel.py -> build/lib/dendropy/legacy copying dendropy/legacy/__init__.py -> build/lib/dendropy/legacy copying dendropy/legacy/coalescent.py -> build/lib/dendropy/legacy copying dendropy/legacy/reconcile.py -> build/lib/dendropy/legacy copying dendropy/legacy/treesplit.py -> build/lib/dendropy/legacy copying dendropy/legacy/ncbi.py -> build/lib/dendropy/legacy copying dendropy/legacy/treecalc.py -> build/lib/dendropy/legacy copying dendropy/legacy/popgenstat.py -> build/lib/dendropy/legacy copying dendropy/legacy/treesum.py -> build/lib/dendropy/legacy copying dendropy/legacy/treesim.py -> build/lib/dendropy/legacy creating build/lib/dendropy/mathlib copying dendropy/mathlib/statistics.py -> build/lib/dendropy/mathlib copying dendropy/mathlib/__init__.py -> build/lib/dendropy/mathlib copying dendropy/mathlib/mathfn.py -> build/lib/dendropy/mathlib copying dendropy/mathlib/probability.py -> build/lib/dendropy/mathlib creating build/lib/dendropy/model copying dendropy/model/__init__.py -> build/lib/dendropy/model copying dendropy/model/treeshape.py -> build/lib/dendropy/model copying dendropy/model/reconcile.py -> build/lib/dendropy/model copying dendropy/model/protractedspeciation.py -> build/lib/dendropy/model copying dendropy/model/parsimony.py -> build/lib/dendropy/model copying dendropy/model/discrete.py -> build/lib/dendropy/model copying dendropy/model/continuous.py -> build/lib/dendropy/model copying dendropy/model/birthdeath.py -> build/lib/dendropy/model copying dendropy/model/coalescent.py -> build/lib/dendropy/model creating build/lib/dendropy/simulate copying dendropy/simulate/popgensim.py -> build/lib/dendropy/simulate copying dendropy/simulate/treesim.py -> build/lib/dendropy/simulate copying dendropy/simulate/charsim.py -> build/lib/dendropy/simulate copying dendropy/simulate/__init__.py -> build/lib/dendropy/simulate creating build/lib/dendropy/test copying dendropy/test/base_newick_test_cases.py -> build/lib/dendropy/test copying dendropy/test/__init__.py -> build/lib/dendropy/test copying dendropy/test/base_standard_trees_parsing_test_cases.py -> build/lib/dendropy/test copying dendropy/test/__main__.py -> build/lib/dendropy/test copying dendropy/test/test_container_normalized_bitmask_dict.py -> build/lib/dendropy/test copying dendropy/test/test_container_frozen_ordered_dict.py -> build/lib/dendropy/test copying dendropy/test/test_tree_from_splits.py -> build/lib/dendropy/test copying dendropy/test/test_tree_split_compatibility.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_statealphabet.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_newick_reader_tree_iter.py -> build/lib/dendropy/test copying dendropy/test/test_coalescent.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_tree_construction_copying_and_identity.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_newick_reader_tree_list.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_newick_reader_rooting.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_nexus_taxon_handling.py -> build/lib/dendropy/test copying dendropy/test/test_birthdeath.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_phylip_writer_chars.py -> build/lib/dendropy/test copying dendropy/test/test_tree_operations_and_manipulations.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_tokenizer.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_nexus_tree_yielder.py -> build/lib/dendropy/test copying dendropy/test/test_phylogenetic_distance_matrix.py -> build/lib/dendropy/test copying dendropy/test/test_protractedspeciation.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_newick_reader_tree.py -> build/lib/dendropy/test copying dendropy/test/test_container_ordered_set.py -> build/lib/dendropy/test copying dendropy/test/test_continuous.py -> build/lib/dendropy/test copying dendropy/test/test_tree_reconciliation_and_discordance.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_tree_list.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_tree_edge_fundamentals.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_nexml_writer_chars.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_fasta_writer.py -> build/lib/dendropy/test copying dendropy/test/test_fitch.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_tree_taxon_management.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_charmatrix.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_fasta_reader.py -> build/lib/dendropy/test copying dendropy/test/test_statistics.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_tree_structure_and_iteration.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_split_bitmasks.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_bipartitions.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_nexml_reader_tree_list.py -> build/lib/dendropy/test copying dendropy/test/test_asciitree.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_nexus_reader_dataset.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_nexus_writer_tree_list.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_taxon.py -> build/lib/dendropy/test copying dendropy/test/test_parsimony_scoring.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_nexml_reader_chars.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_newick_writer.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_tree_node_fundamentals.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_nexus_reader_chars.py -> build/lib/dendropy/test copying dendropy/test/test_paup.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_annotations.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_nexus_writer_tree.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_nexus_reader_tree_list.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_treearray.py -> build/lib/dendropy/test copying dendropy/test/test_tree_summarization_and_consensus.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_nexus_writer_chars.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_basic_tree.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_phylip_reader_chars.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_nexus_writer_dataset.py -> build/lib/dendropy/test copying dendropy/test/test_tree_calculations_and_metrics.py -> build/lib/dendropy/test copying dendropy/test/test_popgenstat.py -> build/lib/dendropy/test copying dendropy/test/test_tree_shape_kernel.py -> build/lib/dendropy/test copying dendropy/test/test_dataio_nexml_writer_trees.py -> build/lib/dendropy/test copying dendropy/test/test_datamodel_dataset.py -> build/lib/dendropy/test creating build/lib/dendropy/utility copying dendropy/utility/textprocessing.py -> build/lib/dendropy/utility copying dendropy/utility/constants.py -> build/lib/dendropy/utility copying dendropy/utility/cli.py -> build/lib/dendropy/utility copying dendropy/utility/timeprocessing.py -> build/lib/dendropy/utility copying dendropy/utility/container.py -> build/lib/dendropy/utility copying dendropy/utility/error.py -> build/lib/dendropy/utility copying dendropy/utility/debug.py -> build/lib/dendropy/utility copying dendropy/utility/terminal.py -> build/lib/dendropy/utility copying dendropy/utility/vcsinfo.py -> build/lib/dendropy/utility copying dendropy/utility/processio.py -> build/lib/dendropy/utility copying dendropy/utility/metavar.py -> build/lib/dendropy/utility copying dendropy/utility/messaging.py -> build/lib/dendropy/utility copying dendropy/utility/bitprocessing.py -> build/lib/dendropy/utility copying dendropy/utility/deprecate.py -> build/lib/dendropy/utility copying dendropy/utility/bibtex.py -> build/lib/dendropy/utility copying dendropy/utility/urlio.py -> build/lib/dendropy/utility copying dendropy/utility/__init__.py -> build/lib/dendropy/utility copying dendropy/utility/filesys.py -> build/lib/dendropy/utility creating build/lib/dendropy/utility/libexec copying dendropy/utility/libexec/__init__.py -> build/lib/dendropy/utility/libexec running egg_info writing requirements to DendroPy.egg-info/requires.txt writing DendroPy.egg-info/PKG-INFO writing top-level names to DendroPy.egg-info/top_level.txt writing dependency_links to DendroPy.egg-info/dependency_links.txt writing entry points to DendroPy.egg-info/entry_points.txt reading manifest file 'DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution writing manifest file 'DendroPy.egg-info/SOURCES.txt' creating build/lib/dendropy/test/benchmark copying dendropy/test/benchmark/__init__.py -> build/lib/dendropy/test/benchmark copying dendropy/test/benchmark/benchmark_newick_light_tree_parser.py -> build/lib/dendropy/test/benchmark copying dendropy/test/benchmark/benchmark_newick_tree_parser.py -> build/lib/dendropy/test/benchmark copying dendropy/test/benchmark/benchmark_tokenizer.py -> build/lib/dendropy/test/benchmark creating build/lib/dendropy/test/data creating build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/COII_Apes.nex -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/GEBA.chars.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/actinopterygii.chars.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/angiosperms.chars.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/angiosperms.chars.txt -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/apternodus.chars.hacked-for-tests.txt -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/apternodus.chars.interleaved.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/apternodus.chars.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/apternodus.chars.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/avian-ovomucoids.chars.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/avian-ovomucoids.chars.txt -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/bad_names.fasta -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/caenophidia_mos.chars.fasta -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/caenophidia_mos.chars.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/caenophidia_mos.chars.txt -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/cetaceans.nex -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/codons.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/community.data.tsv -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/crotaphytus_bicinctores.cytb.aligned.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/crotaphytus_bicinctores.nd2.aligned.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/interleaved-charsets-all.nex -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/interleaved-charsets-c1.nex -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/interleaved-charsets-c2.nex -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/interleaved-charsets-c3.nex -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/orti.nex -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/primates.chars.csv -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/primates.chars.fasta -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/primates.chars.interleaved.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/primates.chars.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/primates.chars.simple.interleaved.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/primates.chars.simple.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/primates.chars.subsets-1stpos.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/primates.chars.subsets-2ndpos.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/primates.chars.subsets-3rdpos.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/primates.chars.subsets-all.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/primates.chars.subsets-coding.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/primates.chars.subsets-noncoding.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/pythonidae.chars.beast.calibrated.xml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/pythonidae.chars.beast.uncalibrated.xml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/pythonidae.chars.fasta -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/pythonidae.chars.interleaved.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/pythonidae.chars.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/pythonidae.chars.phylip -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/pythonidae.chars.txt -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/pythonidae_continuous.chars.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/pythonidae_continuous.chars.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/pythonidae_continuous.chars.txt -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-continuous.as_cells.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-continuous.as_seqs.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-continuous.interleaved.phylip -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-continuous.mesquite.interleaved.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-continuous.mesquite.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-continuous.relaxed.phylip -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-dna.as_cells.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-dna.as_seqs.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-dna.basic.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-dna.fasta -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-dna.interleaved.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-dna.matchchar.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-dna.multi.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-dna.relaxed.phylip -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-dna.simple.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-generic.as_cells.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-generic.as_seqs.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-generic.basic.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-generic.dotted.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-generic.interleaved.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-generic.relaxed.phylip -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-generic.simple.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-multiple-char-blocks.1.basic.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-multiple.as_cells.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-multiple.as_seqs.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-protein.as_cells.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-protein.as_seqs.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-protein.basic.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-protein.fasta -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-protein.interleaved.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-protein.matchchar.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-protein.multi.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-protein.relaxed.phylip -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-protein.simple.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-rna.as_cells.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-rna.as_seqs.nexml -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-rna.basic.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-rna.fasta -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-rna.interleaved.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-rna.matchchar.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-rna.multi.nexus -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-rna.relaxed.phylip -> build/lib/dendropy/test/data/chars copying dendropy/test/data/chars/standard-test-chars-rna.simple.nexus -> build/lib/dendropy/test/data/chars creating build/lib/dendropy/test/data/mixed copying dendropy/test/data/mixed/GEBA.mixed.nexus -> build/lib/dendropy/test/data/mixed copying dendropy/test/data/mixed/geospiza.nex -> build/lib/dendropy/test/data/mixed copying dendropy/test/data/mixed/multitaxa_mesquite.nex -> build/lib/dendropy/test/data/mixed copying dendropy/test/data/mixed/reference_single_taxonset_dataset.nex -> build/lib/dendropy/test/data/mixed copying dendropy/test/data/mixed/standard-test-mixed.1.basic.nexus -> build/lib/dendropy/test/data/mixed creating build/lib/dendropy/test/data/other copying dendropy/test/data/other/community.data.tsv -> build/lib/dendropy/test/data/other copying dendropy/test/data/other/community.data.weighted.unnormalized.ses.mntd.csv -> build/lib/dendropy/test/data/other copying dendropy/test/data/other/community.data.weighted.unnormalized.ses.mpd.csv -> build/lib/dendropy/test/data/other copying dendropy/test/data/other/hiv1.distances.csv -> build/lib/dendropy/test/data/other copying dendropy/test/data/other/hiv1.node-to-node-dists.csv -> build/lib/dendropy/test/data/other copying dendropy/test/data/other/hiv1.unweighted.node-to-node-dists.csv -> build/lib/dendropy/test/data/other copying dendropy/test/data/other/laurasiatherian.distances.ml.csv -> build/lib/dendropy/test/data/other copying dendropy/test/data/other/pythonidae.mle.node-to-node-dists.csv -> build/lib/dendropy/test/data/other copying dendropy/test/data/other/pythonidae.mle.unweighted.node-to-node-dists.csv -> build/lib/dendropy/test/data/other copying dendropy/test/data/other/pythonidae.mle.unweighted.pdm.csv -> build/lib/dendropy/test/data/other copying dendropy/test/data/other/pythonidae.mle.weighted.pdm.csv -> build/lib/dendropy/test/data/other copying dendropy/test/data/other/saitou_and_nei_1987_table1.csv -> build/lib/dendropy/test/data/other copying dendropy/test/data/other/wpnjex.csv -> build/lib/dendropy/test/data/other copying dendropy/test/data/other/wpupgmaex.csv -> build/lib/dendropy/test/data/other creating build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits copying dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> build/lib/dendropy/test/data/splits creating build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/APG_Angiosperms.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/APG_Angiosperms.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/Bininda-emonds_2007_mammals.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/Bininda-emonds_2007_mammals.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/GEBA.tree.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/GEBA.tree.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/Jetz_et_al_2012_Aves.sample.tree.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/Jetz_et_al_2012_Aves.sample.tree.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/Smith_2001_angiosperms.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/Smith_2001_angiosperms.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/apternodus.tre -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/bipartition_encoding_fixture.json -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/bird_orders.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/bird_orders.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/cetaceans.mb.no-clock.mcmc.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/cetaceans.mb.no-clock.mcmc.weighted-01.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/cetaceans.mb.no-clock.mcmc.weighted-02.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/cetaceans.mb.no-clock.mcmc.weighted-03.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/cetaceans.mb.strict-clock.mcmc.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-01.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-02.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-03.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/cetaceans.raxml.bootstraps.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/cetaceans.raxml.bootstraps.weighted-01.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/cetaceans.raxml.bootstraps.weighted-02.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/cetaceans.raxml.bootstraps.weighted-03.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/cetaceans.taxa.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/community.tree.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/curated-with-translate-block-and-internal-taxa.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/curated-with-translate-block-and-no-taxa-block-and-untranslated-internal-taxa.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/curated-with-translate-block-and-no-taxa-block.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/curated-with-translate-block-and-untranslated-internal-taxa.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/deepcoal1.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.json -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexml -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexus-metadata-comments.json -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted.json -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted.nexml -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-multifurcating-unrooted.json -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-multifurcating-unrooted.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-multifurcating-unrooted.nexml -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-multifurcating-unrooted.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n10-rooted-treeshapes.json -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n10-rooted-treeshapes.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n10-rooted-treeshapes.nexml -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n10-rooted-treeshapes.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n12-x2.json -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n12-x2.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n12-x2.nexml -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n12-x2.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.json -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.nexml -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.json -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexml -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexus-metadata-comments.json -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x100a.json -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x100a.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x100a.nexml -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x100a.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10a.json -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10a.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10a.nexml -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10a.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10b.json -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10b.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10b.nexml -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10b.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/feb032009.splits.csv -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/feb032009.trees.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/feb032009.trees.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/hiv1.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/hiv1.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/incomplete_leaves_rooted.dendropy-pruned.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/incomplete_leaves_rooted.paup-pruned.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/incomplete_leaves_rooted.pre-pruned.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/incomplete_leaves_rooted.pruned_taxa.txt -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/incomplete_leaves_rooted.retained_taxa.txt -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/incomplete_leaves_unrooted.dendropy-pruned.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/incomplete_leaves_unrooted.paup-pruned.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/incomplete_leaves_unrooted.pre-pruned.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/incomplete_leaves_unrooted.pruned_taxa.txt -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/incomplete_leaves_unrooted.retained_taxa.txt -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/issue_mth_2009-02-03.rooted.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/issue_mth_2009-02-03.unrooted.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/maj-rule-bug1.trees.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/maj-rule-bug2.trees.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/multitreeblocks.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/multitreeblocks2.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/primates.beast.mcct.meanh.tre -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/primates.beast.mcct.medianh.tre -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/primates.beast.mcct.noedgelens.tree -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/primates.beast.mcmc.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/primates.trees.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/prune_rooted.dendropy-pruned.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/prune_rooted.paup-pruned.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/prune_rooted.pre-pruned.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/prune_rooted.pruned_taxa.txt -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/prune_rooted.retained_taxa.txt -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/prune_unrooted.dendropy-pruned.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/prune_unrooted.paup-pruned.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/prune_unrooted.pre-pruned.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/prune_unrooted.pruned_taxa.txt -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/prune_unrooted.retained_taxa.txt -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.annotated.bad.nexml -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.annotated.nexml -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.beast.mcmc.trees -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.beast.summary.tre -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.mb.con -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.mb.run1.t -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.mb.run2.t -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.mb.run3.t -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.mb.run4.t -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.mlboots.newick.tre -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.mlboots.nexus.tre -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.mle.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.mle.nex -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.mle.numbered-nodes.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.random.bd0301.midpoint-rooted.tre -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.random.bd0301.randomly-rooted.tre -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.random.bd0301.tre -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.reference-trees.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.reference-trees.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.reference-trees.no-taxa-block.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.reference-trees.no-taxa-no-translate-block.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/pythonidae.reference-trees.taxon-numbers-only.newick -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/rana.trees.nexus -> build/lib/dendropy/test/data/trees copying dendropy/test/data/trees/treebase_s373.xml -> build/lib/dendropy/test/data/trees creating build/lib/dendropy/test/support copying dendropy/test/support/__init__.py -> build/lib/dendropy/test/support copying dendropy/test/support/compare_and_validate.py -> build/lib/dendropy/test/support copying dendropy/test/support/coverage_analysis.py -> build/lib/dendropy/test/support copying dendropy/test/support/curated_dataset.py -> build/lib/dendropy/test/support copying dendropy/test/support/curated_test_tree.py -> build/lib/dendropy/test/support copying dendropy/test/support/curated_test_tree_list.py -> build/lib/dendropy/test/support copying dendropy/test/support/dendropytest.py -> build/lib/dendropy/test/support copying dendropy/test/support/mockrandom.py -> build/lib/dendropy/test/support copying dendropy/test/support/mockreader.py -> build/lib/dendropy/test/support copying dendropy/test/support/pathmap.py -> build/lib/dendropy/test/support copying dendropy/test/support/paupsplitsreference.py -> build/lib/dendropy/test/support copying dendropy/test/support/standard_file_test_chars.py -> build/lib/dendropy/test/support copying dendropy/test/support/standard_file_test_datasets.py -> build/lib/dendropy/test/support copying dendropy/test/support/standard_file_test_trees.py -> build/lib/dendropy/test/support running build_scripts creating build/scripts-2.7 copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-2.7 changing mode of build/scripts-2.7/sumtrees.py from 644 to 755 =========================================================================== =================================================== ===> py27-DendroPy-4.1.0 depends on package: py27-setuptools27>0 - found ===> py27-DendroPy-4.1.0 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =================================================== ===> Staging for py27-DendroPy-4.1.0 ===> Generating temporary packing list -setup.py: None -setup.py: using distutils -setup.py: using canned package list -setup.py: packages identified: dendropy : dendropy dendropy.calculate : dendropy/calculate dendropy.dataio : dendropy/dataio dendropy.datamodel : dendropy/datamodel dendropy.interop : dendropy/interop dendropy.legacy : dendropy/legacy dendropy.mathlib : dendropy/mathlib dendropy.model : dendropy/model dendropy.simulate : dendropy/simulate dendropy.test : dendropy/test dendropy.utility : dendropy/utility dendropy.utility.libexec : dendropy/utility/libexec -setup.py: scripts identified: applications/sumtrees/sumtrees.py -setup.py: setuptools command extensions are available coverage could not be imported: test coverage analysis not available -setup.py: coverage analysis not available DendroPy version : DendroPy 4.1.0 DendroPy location : /wrkdirs/science/py-DendroPy/DendroPy-4.1.0/dendropy Python version : 2.7.12 (default, Oct 7 2016, 17:14:37) [GCC 5.3.1 [DragonFly] Release/2015-12-04] Python executable : /usr/local/bin/python2.7 Python site packages : ['/usr/local/lib/python2.7/site-packages', '/usr/local/lib/site-python'] running install running build running build_py running egg_info writing requirements to DendroPy.egg-info/requires.txt writing DendroPy.egg-info/PKG-INFO writing top-level names to DendroPy.egg-info/top_level.txt writing dependency_links to DendroPy.egg-info/dependency_links.txt writing entry points to DendroPy.egg-info/entry_points.txt reading manifest file 'DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution writing manifest file 'DendroPy.egg-info/SOURCES.txt' running build_scripts running install_lib creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7 creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/container.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/textprocessing.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/processio.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/debug.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/cli.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/deprecate.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/filesys.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/timeprocessing.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/terminal.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/bibtex.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/error.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/libexec copying build/lib/dendropy/utility/libexec/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/libexec copying build/lib/dendropy/utility/metavar.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/constants.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/messaging.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/bitprocessing.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/urlio.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/vcsinfo.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/gbif.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/paup.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/ape.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/ete.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/rstats.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/seqgen.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/biopython.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/entrez.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/muscle.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/genbank.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/raxml.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_nexus_writer_tree.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_datamodel_bipartitions.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_basic_tree.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/__main__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_tree_from_splits.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_nexus_writer_tree_list.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_container_frozen_ordered_dict.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_popgenstat.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/benchmark copying build/lib/dendropy/test/benchmark/benchmark_newick_light_tree_parser.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/benchmark copying build/lib/dendropy/test/benchmark/benchmark_tokenizer.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/benchmark copying build/lib/dendropy/test/benchmark/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/benchmark copying build/lib/dendropy/test/benchmark/benchmark_newick_tree_parser.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/benchmark copying build/lib/dendropy/test/test_datamodel_tree_edge_fundamentals.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_datamodel_taxon.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_nexus_reader_tree_list.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_nexml_writer_chars.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_datamodel_tree_taxon_management.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_tree_split_compatibility.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_parsimony_scoring.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_asciitree.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_nexus_reader_chars.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_fasta_reader.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_nexus_reader_dataset.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_phylip_writer_chars.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_datamodel_tree_structure_and_iteration.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_newick_writer.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_datamodel_statealphabet.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_datamodel_treearray.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_fitch.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_datamodel_charmatrix.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_newick_reader_rooting.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_datamodel_tree_construction_copying_and_identity.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_nexus_writer_chars.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_statistics.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_nexus_tree_yielder.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-multifurcating-unrooted.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexus-metadata-comments.json -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-multifurcating-unrooted.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted.json -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n10-rooted-treeshapes.json -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-multifurcating-unrooted.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-multifurcating-unrooted.json -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.json -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n12-x2.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n10-rooted-treeshapes.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n12-x2.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n10-rooted-treeshapes.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n12-x2.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n12-x2.json -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.json -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n10-rooted-treeshapes.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/GEBA.tree.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/cetaceans.taxa.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/apternodus.tre -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/Smith_2001_angiosperms.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/bipartition_encoding_fixture.json -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/cetaceans.raxml.bootstraps.weighted-03.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/Bininda-emonds_2007_mammals.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/Smith_2001_angiosperms.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/cetaceans.mb.no-clock.mcmc.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-03.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/cetaceans.raxml.bootstraps.weighted-01.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/Bininda-emonds_2007_mammals.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/cetaceans.mb.no-clock.mcmc.weighted-01.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/curated-with-translate-block-and-no-taxa-block-and-untranslated-internal-taxa.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/curated-with-translate-block-and-internal-taxa.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/APG_Angiosperms.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/cetaceans.raxml.bootstraps.weighted-02.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/community.tree.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/APG_Angiosperms.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/Jetz_et_al_2012_Aves.sample.tree.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/cetaceans.raxml.bootstraps.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/GEBA.tree.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/cetaceans.mb.no-clock.mcmc.weighted-02.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-02.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/curated-with-translate-block-and-no-taxa-block.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/Jetz_et_al_2012_Aves.sample.tree.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/bird_orders.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-01.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/bird_orders.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/deepcoal1.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/curated-with-translate-block-and-untranslated-internal-taxa.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.json -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/cetaceans.mb.strict-clock.mcmc.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/cetaceans.mb.no-clock.mcmc.weighted-03.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/prune_rooted.retained_taxa.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/incomplete_leaves_unrooted.retained_taxa.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10a.json -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x100a.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x100a.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/primates.beast.mcct.medianh.tre -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/multitreeblocks2.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/prune_rooted.pre-pruned.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/prune_rooted.dendropy-pruned.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/incomplete_leaves_unrooted.pruned_taxa.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/prune_rooted.paup-pruned.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/incomplete_leaves_unrooted.pre-pruned.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x100a.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x100a.json -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexus-metadata-comments.json -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.beast.mcmc.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/incomplete_leaves_unrooted.paup-pruned.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.annotated.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.mb.run4.t -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/prune_unrooted.retained_taxa.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.reference-trees.no-taxa-no-translate-block.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/incomplete_leaves_unrooted.dendropy-pruned.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/incomplete_leaves_rooted.retained_taxa.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/primates.beast.mcct.meanh.tre -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/primates.trees.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/primates.beast.mcmc.trees -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/incomplete_leaves_rooted.pruned_taxa.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/incomplete_leaves_rooted.pre-pruned.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/incomplete_leaves_rooted.paup-pruned.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/incomplete_leaves_rooted.dendropy-pruned.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/primates.beast.mcct.noedgelens.tree -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/hiv1.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.mlboots.nexus.tre -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/hiv1.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/prune_unrooted.pruned_taxa.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.annotated.bad.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/feb032009.trees.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/prune_unrooted.pre-pruned.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.reference-trees.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/feb032009.trees.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/multitreeblocks.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/maj-rule-bug1.trees.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/feb032009.splits.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10b.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/prune_unrooted.paup-pruned.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/rana.trees.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.mle.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.mb.run2.t -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/treebase_s373.xml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.reference-trees.taxon-numbers-only.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/prune_unrooted.dendropy-pruned.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/issue_mth_2009-02-03.unrooted.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.reference-trees.no-taxa-block.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.mb.con -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10b.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.reference-trees.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.random.bd0301.randomly-rooted.tre -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.mle.numbered-nodes.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/prune_rooted.pruned_taxa.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10b.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.mle.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10b.json -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/maj-rule-bug2.trees.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10a.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.mlboots.newick.tre -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.mb.run3.t -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10a.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10a.newick -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.random.bd0301.midpoint-rooted.tre -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.mb.run1.t -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.random.bd0301.tre -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/issue_mth_2009-02-03.rooted.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees copying build/lib/dendropy/test/data/trees/pythonidae.beast.summary.tre -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/trees creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/primates.chars.subsets-coding.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/apternodus.chars.interleaved.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/primates.chars.interleaved.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/primates.chars.subsets-1stpos.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/cetaceans.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-protein.multi.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-rna.fasta -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/pythonidae_continuous.chars.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-generic.interleaved.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-dna.simple.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/primates.chars.simple.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-multiple.as_seqs.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/pythonidae_continuous.chars.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/primates.chars.subsets-3rdpos.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-generic.as_cells.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-protein.fasta -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/pythonidae_continuous.chars.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/pythonidae.chars.beast.uncalibrated.xml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-dna.as_cells.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/community.data.tsv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-dna.basic.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/pythonidae.chars.beast.calibrated.xml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/codons.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-rna.simple.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/actinopterygii.chars.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-rna.matchchar.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-protein.interleaved.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/interleaved-charsets-all.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/orti.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/primates.chars.fasta -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/pythonidae.chars.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-protein.simple.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/primates.chars.subsets-all.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-generic.basic.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-rna.multi.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/interleaved-charsets-c3.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-rna.as_cells.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-dna.multi.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/caenophidia_mos.chars.fasta -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-dna.fasta -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-protein.as_seqs.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-protein.basic.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/apternodus.chars.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/apternodus.chars.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-dna.matchchar.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/primates.chars.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-continuous.mesquite.interleaved.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/COII_Apes.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-dna.interleaved.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-continuous.mesquite.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-generic.relaxed.phylip -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/pythonidae.chars.phylip -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-generic.simple.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/primates.chars.subsets-noncoding.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/pythonidae.chars.interleaved.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/crotaphytus_bicinctores.cytb.aligned.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/interleaved-charsets-c1.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-continuous.interleaved.phylip -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-continuous.as_cells.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-continuous.as_seqs.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-dna.relaxed.phylip -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/crotaphytus_bicinctores.nd2.aligned.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-generic.as_seqs.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-rna.as_seqs.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-multiple.as_cells.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-rna.interleaved.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-protein.as_cells.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-multiple-char-blocks.1.basic.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/pythonidae.chars.fasta -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/primates.chars.subsets-2ndpos.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-continuous.relaxed.phylip -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/pythonidae.chars.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/GEBA.chars.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/caenophidia_mos.chars.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/angiosperms.chars.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-protein.relaxed.phylip -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/angiosperms.chars.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/primates.chars.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/interleaved-charsets-c2.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/avian-ovomucoids.chars.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/avian-ovomucoids.chars.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-rna.basic.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-dna.as_seqs.nexml -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-rna.relaxed.phylip -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/primates.chars.simple.interleaved.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/apternodus.chars.hacked-for-tests.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/caenophidia_mos.chars.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-generic.dotted.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/standard-test-chars-protein.matchchar.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars copying build/lib/dendropy/test/data/chars/bad_names.fasta -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/chars creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/community.data.weighted.unnormalized.ses.mpd.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/hiv1.unweighted.node-to-node-dists.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/pythonidae.mle.weighted.pdm.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/laurasiatherian.distances.ml.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/pythonidae.mle.unweighted.pdm.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/hiv1.distances.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/hiv1.node-to-node-dists.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/pythonidae.mle.unweighted.node-to-node-dists.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/community.data.weighted.unnormalized.ses.mntd.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/community.data.tsv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/wpnjex.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/saitou_and_nei_1987_table1.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/pythonidae.mle.node-to-node-dists.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other copying build/lib/dendropy/test/data/other/wpupgmaex.csv -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/other creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/mixed copying build/lib/dendropy/test/data/mixed/GEBA.mixed.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/mixed copying build/lib/dendropy/test/data/mixed/geospiza.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/mixed copying build/lib/dendropy/test/data/mixed/multitaxa_mesquite.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/mixed copying build/lib/dendropy/test/data/mixed/reference_single_taxonset_dataset.nex -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/mixed copying build/lib/dendropy/test/data/mixed/standard-test-mixed.1.basic.nexus -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/mixed creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/data/splits copying build/lib/dendropy/test/base_newick_test_cases.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_tree_shape_kernel.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_nexus_writer_dataset.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_newick_reader_tree_list.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_nexml_reader_chars.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_container_normalized_bitmask_dict.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_nexml_reader_tree_list.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_tree_reconciliation_and_discordance.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_fasta_writer.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_newick_reader_tree_iter.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_nexus_taxon_handling.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_coalescent.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_datamodel_dataset.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_continuous.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_datamodel_annotations.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_nexml_writer_trees.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_phylip_reader_chars.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_tree_summarization_and_consensus.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_container_ordered_set.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_birthdeath.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_newick_reader_tree.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_phylogenetic_distance_matrix.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_tree_operations_and_manipulations.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_tree_calculations_and_metrics.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_dataio_tokenizer.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/base_standard_trees_parsing_test_cases.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_protractedspeciation.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_datamodel_split_bitmasks.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_paup.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_datamodel_tree_list.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test copying build/lib/dendropy/test/test_datamodel_tree_node_fundamentals.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/curated_test_tree_list.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/mockreader.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/paupsplitsreference.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/standard_file_test_trees.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/standard_file_test_chars.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/pathmap.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/mockrandom.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/dendropytest.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/curated_test_tree.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/coverage_analysis.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/standard_file_test_datasets.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/compare_and_validate.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support copying build/lib/dendropy/test/support/curated_dataset.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexmlwriter.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/newickyielder.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/newickreader.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/tokenizer.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/phylipreader.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexusyielder.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexuswriter.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/fastawriter.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/newickwriter.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/fastareader.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexmlyielder.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexmlreader.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/phylipwriter.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/newick.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/ioservice.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexusprocessing.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexusreader.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/xmlprocessing.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/parsimony.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/discrete.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/continuous.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/coalescent.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/protractedspeciation.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/treeshape.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/reconcile.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/birthdeath.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib copying build/lib/dendropy/mathlib/statistics.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib copying build/lib/dendropy/mathlib/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib copying build/lib/dendropy/mathlib/mathfn.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib copying build/lib/dendropy/mathlib/probability.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate copying build/lib/dendropy/simulate/treesim.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate copying build/lib/dendropy/simulate/popgensim.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate copying build/lib/dendropy/simulate/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate copying build/lib/dendropy/simulate/charsim.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate copying build/lib/dendropy/__main__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/datasetmodel.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/treemodel.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/taxonmodel.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/charstatemodel.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/treecollectionmodel.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/charmatrixmodel.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/basemodel.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/mathfn.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/popgenstat.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/combinatorics.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/treesum.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/treemeasure.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/statistics.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/treecompare.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/probability.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/treescore.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/phylogeneticdistance.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate creating /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/popgensim.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treesplit.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treesum.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/ncbi.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/continuous.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treesim.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/popgenstat.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treemanip.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treecalc.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/reconcile.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/coalescent.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/seqsim.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/seqmodel.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/__init__.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/container.py to container.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/textprocessing.py to textprocessing.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/processio.py to processio.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/debug.py to debug.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/cli.py to cli.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/deprecate.py to deprecate.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/filesys.py to filesys.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/timeprocessing.py to timeprocessing.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/terminal.py to terminal.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/bibtex.py to bibtex.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/error.py to error.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/libexec/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/metavar.py to metavar.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/constants.py to constants.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/messaging.py to messaging.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/bitprocessing.py to bitprocessing.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/urlio.py to urlio.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/vcsinfo.py to vcsinfo.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/gbif.py to gbif.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/paup.py to paup.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/ape.py to ape.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/ete.py to ete.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/rstats.py to rstats.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/seqgen.py to seqgen.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/biopython.py to biopython.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/entrez.py to entrez.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/muscle.py to muscle.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/genbank.py to genbank.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/raxml.py to raxml.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_nexus_writer_tree.py to test_dataio_nexus_writer_tree.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_bipartitions.py to test_datamodel_bipartitions.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_basic_tree.py to test_dataio_basic_tree.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/__main__.py to __main__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_tree_from_splits.py to test_tree_from_splits.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_nexus_writer_tree_list.py to test_dataio_nexus_writer_tree_list.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_container_frozen_ordered_dict.py to test_container_frozen_ordered_dict.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_popgenstat.py to test_popgenstat.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/benchmark/benchmark_newick_light_tree_parser.py to benchmark_newick_light_tree_parser.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/benchmark/benchmark_tokenizer.py to benchmark_tokenizer.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/benchmark/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/benchmark/benchmark_newick_tree_parser.py to benchmark_newick_tree_parser.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_tree_edge_fundamentals.py to test_datamodel_tree_edge_fundamentals.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_taxon.py to test_datamodel_taxon.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_nexus_reader_tree_list.py to test_dataio_nexus_reader_tree_list.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_nexml_writer_chars.py to test_dataio_nexml_writer_chars.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_tree_taxon_management.py to test_datamodel_tree_taxon_management.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_tree_split_compatibility.py to test_tree_split_compatibility.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_parsimony_scoring.py to test_parsimony_scoring.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_asciitree.py to test_asciitree.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_nexus_reader_chars.py to test_dataio_nexus_reader_chars.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_fasta_reader.py to test_dataio_fasta_reader.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_nexus_reader_dataset.py to test_dataio_nexus_reader_dataset.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_phylip_writer_chars.py to test_dataio_phylip_writer_chars.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_tree_structure_and_iteration.py to test_datamodel_tree_structure_and_iteration.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_newick_writer.py to test_dataio_newick_writer.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_statealphabet.py to test_datamodel_statealphabet.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_treearray.py to test_datamodel_treearray.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_fitch.py to test_fitch.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_charmatrix.py to test_datamodel_charmatrix.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_newick_reader_rooting.py to test_dataio_newick_reader_rooting.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_tree_construction_copying_and_identity.py to test_datamodel_tree_construction_copying_and_identity.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_nexus_writer_chars.py to test_dataio_nexus_writer_chars.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_statistics.py to test_statistics.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_nexus_tree_yielder.py to test_dataio_nexus_tree_yielder.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/base_newick_test_cases.py to base_newick_test_cases.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_tree_shape_kernel.py to test_tree_shape_kernel.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_nexus_writer_dataset.py to test_dataio_nexus_writer_dataset.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_newick_reader_tree_list.py to test_dataio_newick_reader_tree_list.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_nexml_reader_chars.py to test_dataio_nexml_reader_chars.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_container_normalized_bitmask_dict.py to test_container_normalized_bitmask_dict.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_nexml_reader_tree_list.py to test_dataio_nexml_reader_tree_list.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_tree_reconciliation_and_discordance.py to test_tree_reconciliation_and_discordance.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_fasta_writer.py to test_dataio_fasta_writer.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_newick_reader_tree_iter.py to test_dataio_newick_reader_tree_iter.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_nexus_taxon_handling.py to test_dataio_nexus_taxon_handling.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_coalescent.py to test_coalescent.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_dataset.py to test_datamodel_dataset.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_continuous.py to test_continuous.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_annotations.py to test_datamodel_annotations.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_nexml_writer_trees.py to test_dataio_nexml_writer_trees.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_phylip_reader_chars.py to test_dataio_phylip_reader_chars.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_tree_summarization_and_consensus.py to test_tree_summarization_and_consensus.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_container_ordered_set.py to test_container_ordered_set.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_birthdeath.py to test_birthdeath.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_newick_reader_tree.py to test_dataio_newick_reader_tree.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_phylogenetic_distance_matrix.py to test_phylogenetic_distance_matrix.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_tree_operations_and_manipulations.py to test_tree_operations_and_manipulations.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_tree_calculations_and_metrics.py to test_tree_calculations_and_metrics.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_dataio_tokenizer.py to test_dataio_tokenizer.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/base_standard_trees_parsing_test_cases.py to base_standard_trees_parsing_test_cases.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_protractedspeciation.py to test_protractedspeciation.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_split_bitmasks.py to test_datamodel_split_bitmasks.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_paup.py to test_paup.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_tree_list.py to test_datamodel_tree_list.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/test_datamodel_tree_node_fundamentals.py to test_datamodel_tree_node_fundamentals.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/curated_test_tree_list.py to curated_test_tree_list.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/mockreader.py to mockreader.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/paupsplitsreference.py to paupsplitsreference.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/standard_file_test_trees.py to standard_file_test_trees.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/standard_file_test_chars.py to standard_file_test_chars.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/pathmap.py to pathmap.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/mockrandom.py to mockrandom.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/dendropytest.py to dendropytest.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/curated_test_tree.py to curated_test_tree.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/coverage_analysis.py to coverage_analysis.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/standard_file_test_datasets.py to standard_file_test_datasets.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/compare_and_validate.py to compare_and_validate.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/test/support/curated_dataset.py to curated_dataset.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexmlwriter.py to nexmlwriter.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/newickyielder.py to newickyielder.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/newickreader.py to newickreader.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/tokenizer.py to tokenizer.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/phylipreader.py to phylipreader.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexusyielder.py to nexusyielder.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexuswriter.py to nexuswriter.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/fastawriter.py to fastawriter.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/newickwriter.py to newickwriter.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/fastareader.py to fastareader.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexmlyielder.py to nexmlyielder.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexmlreader.py to nexmlreader.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/phylipwriter.py to phylipwriter.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/newick.py to newick.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/ioservice.py to ioservice.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexusprocessing.py to nexusprocessing.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexusreader.py to nexusreader.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/xmlprocessing.py to xmlprocessing.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/parsimony.py to parsimony.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/discrete.py to discrete.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/continuous.py to continuous.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/coalescent.py to coalescent.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/protractedspeciation.py to protractedspeciation.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/treeshape.py to treeshape.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/reconcile.py to reconcile.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/birthdeath.py to birthdeath.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib/statistics.py to statistics.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib/mathfn.py to mathfn.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib/probability.py to probability.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate/treesim.py to treesim.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate/popgensim.py to popgensim.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate/charsim.py to charsim.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/__main__.py to __main__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/datasetmodel.py to datasetmodel.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/treemodel.py to treemodel.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/taxonmodel.py to taxonmodel.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/charstatemodel.py to charstatemodel.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/treecollectionmodel.py to treecollectionmodel.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/charmatrixmodel.py to charmatrixmodel.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/basemodel.py to basemodel.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/mathfn.py to mathfn.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/popgenstat.py to popgenstat.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/combinatorics.py to combinatorics.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/treesum.py to treesum.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/treemeasure.py to treemeasure.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/statistics.py to statistics.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/treecompare.py to treecompare.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/probability.py to probability.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/treescore.py to treescore.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/__init__.py to __init__.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/phylogeneticdistance.py to phylogeneticdistance.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/popgensim.py to popgensim.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/treesplit.py to treesplit.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/treesum.py to treesum.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/ncbi.py to ncbi.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/continuous.py to continuous.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/treesim.py to treesim.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/popgenstat.py to popgenstat.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/treemanip.py to treemanip.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/treecalc.py to treecalc.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/reconcile.py to reconcile.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/coalescent.py to coalescent.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/seqsim.py to seqsim.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/seqmodel.py to seqmodel.pyc byte-compiling /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmpRTtUn_.py' /usr/local/bin/python2.7 -O /tmp/tmpRTtUn_.py removing /tmp/tmpRTtUn_.py running install_egg_info Copying DendroPy.egg-info to /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/DendroPy-4.1.0-py2.7.egg-info running install_scripts copying build/scripts-2.7/sumtrees.py -> /wrkdirs/science/py-DendroPy/stage/usr/local/bin changing mode of /wrkdirs/science/py-DendroPy/stage/usr/local/bin/sumtrees.py to 755 writing list of installed files to '/wrkdirs/science/py-DendroPy/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) if [ -d "/wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/DendroPy-4.1.0-py2.7.egg-info" ]; then /bin/ls /wrkdirs/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/DendroPy-4.1.0-py2.7.egg-info | while read f; do echo lib/python2.7/site-packages/DendroPy-4.1.0-py2.7.egg-info/${f} >> /wrkdirs/science/py-DendroPy/.PLIST.mktmp; done; fi; =========================================================================== =================================================== ===> Building package for py27-DendroPy-4.1.0 file sizes/checksums [1038]: .......... done packing files [1038]: .......... done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for py27-DendroPy-4.1.0 build of science/py-DendroPy ended at Sun Oct 9 12:21:50 PDT 2016 build time: 00:01:36