=> Building math/parmgridgen build started at Sun Oct 9 09:07:19 PDT 2016 port directory: /usr/ports/math/parmgridgen building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: devel@stasyan.com ident warning: no id keywords in /build/boomdata/data/.m/Release46-default/ref/../02//usr/ports/math/parmgridgen/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400600 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release46-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=parmgridgen-1.0_10 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release46-default/ref/.p/pool MASTERNAME=Release46-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for parmgridgen-1.0_10: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/math/parmgridgen XDG_CONFIG_HOME=/wrkdirs/math/parmgridgen HOME=/wrkdirs/math/parmgridgen TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/math/parmgridgen XDG_CONFIG_HOME=/wrkdirs/math/parmgridgen HOME=/wrkdirs/math/parmgridgen TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=4.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/parmgridgen" EXAMPLESDIR="share/examples/parmgridgen" DATADIR="share/parmgridgen" WWWDIR="www/parmgridgen" ETCDIR="etc/parmgridgen" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/parmgridgen DOCSDIR=/usr/local/share/doc/parmgridgen EXAMPLESDIR=/usr/local/share/examples/parmgridgen WWWDIR=/usr/local/www/parmgridgen ETCDIR=/usr/local/etc/parmgridgen --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== =========================================================================== =================================================== ===> parmgridgen-1.0_10 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> parmgridgen-1.0_10 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of parmgridgen-1.0_10 =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by parmgridgen-1.0_10 for building =========================================================================== =================================================== ===> Fetching all distfiles required by parmgridgen-1.0_10 for building => SHA256 Checksum OK for ParMGridGen-1.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by parmgridgen-1.0_10 for building ===> Extracting for parmgridgen-1.0_10 => SHA256 Checksum OK for ParMGridGen-1.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for parmgridgen-1.0_10 ===> Applying ports patches for parmgridgen-1.0_10 =========================================================================== =================================================== ===> parmgridgen-1.0_10 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz Installing gmake-4.2.1_1... `-- Installing indexinfo-0.2.5... `-- Extracting indexinfo-0.2.5: .... done `-- Installing gettext-runtime-0.19.8.1... `-- Extracting gettext-runtime-0.19.8.1: .......... done Extracting gmake-4.2.1_1: .......... done ===> parmgridgen-1.0_10 depends on executable: gmake - found ===> Returning to build of parmgridgen-1.0_10 =========================================================================== =================================================== ===> parmgridgen-1.0_10 depends on shared library: libmpi.so - not found ===> Installing existing package /packages/All/openmpi-1.10.4.txz Installing openmpi-1.10.4... `-- Installing libltdl-2.4.6... `-- Extracting libltdl-2.4.6: .......... done `-- Installing hwloc-1.11.1... | `-- Installing libxml2-2.9.4... | `-- Extracting libxml2-2.9.4: .......... done | `-- Installing libpciaccess-0.13.4... | | `-- Installing pciids-20160621... | | `-- Extracting pciids-20160621: ..... done | `-- Extracting libpciaccess-0.13.4: ...... done `-- Extracting hwloc-1.11.1: .......... done `-- Installing gcc5-5.4.0... | `-- Installing mpc-1.0.3... | | `-- Installing gmp-5.1.3_3... | | `-- Extracting gmp-5.1.3_3: .......... done | | `-- Installing mpfr-3.1.5... | | `-- Extracting mpfr-3.1.5: .......... done | `-- Extracting mpc-1.0.3: ...... done | `-- Installing binutils-2.27_4,1... | `-- Extracting binutils-2.27_4,1: .......... done `-- Extracting gcc5-5.4.0: .......... done Extracting openmpi-1.10.4: .......... done Message from gcc5-5.4.0: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> parmgridgen-1.0_10 depends on shared library: libmpi.so - found (/usr/local/mpi/openmpi/lib/libmpi.so) ===> Returning to build of parmgridgen-1.0_10 =========================================================================== =================================================== ===> Configuring for parmgridgen-1.0_10 =========================================================================== =================================================== ===> Building for parmgridgen-1.0_10 gmake[1]: Entering directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0' (cd MGridGen ; gmake) gmake[2]: Entering directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/MGridGen' (cd IMlib ; gmake ) gmake[3]: Entering directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/MGridGen/IMlib' cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c blas.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c dfkeysort.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c dkeysort.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c file.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c ifkeysort.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c ifloatsort.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c iintsort.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c ikeysort.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c memory.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c sort.c sort.c: In function 'BucketSortKeysInc': sort.c:66:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&counts, LTERM); ^ cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c util.c ar rv libIMlib.a blas.o dfkeysort.o dkeysort.o file.o ifkeysort.o ifloatsort.o iintsort.o ikeysort.o memory.o sort.o util.o /usr/libexec/binutils225/elf/ar: creating libIMlib.a a - blas.o a - dfkeysort.o a - dkeysort.o a - file.o a - ifkeysort.o a - ifloatsort.o a - iintsort.o a - ikeysort.o a - memory.o a - sort.o a - util.o ar -ts libIMlib.a gmake[3]: Leaving directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/MGridGen/IMlib' (cd Lib ; gmake ) gmake[3]: Entering directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/MGridGen/Lib' cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c coarsen.c coarsen.c: In function 'Coarsen_Restricted': coarsen.c:83:5: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&(cgraph->finer->where), LTERM); ^ cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c kwayfm.c kwayfm.c: In function 'Random_KWayARatioRefine': kwayfm.c:149:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&perm, &phtable, °rees, &ptarget, LTERM); ^ cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c match.c match.c: In function 'Match_RM': match.c:58:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&match, &perm, LTERM); ^ cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c merge.c merge.c: In function 'Cycle': merge.c:32:4: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&graph->pwgts, &graph->pvol, &graph->psurf, LTERM); ^ cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c mgridgen.c cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c refine.c refine.c: In function 'RefineKWay': refine.c:77:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&graph->pwgts, &graph->pvol, &graph->psurf, LTERM); ^ cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c setup.c setup.c: In function 'FreeGraph': setup.c:52:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&graph->xadj, &graph->vwgt, &graph->vvol, &graph->vsurf, ^ ar rv ../../libmgrid.a coarsen.o kwayfm.o match.o merge.o mgridgen.o refine.o setup.o ../IMlib/blas.o ../IMlib/dfkeysort.o ../IMlib/dkeysort.o ../IMlib/file.o ../IMlib/ifkeysort.o ../IMlib/ifloatsort.o ../IMlib/iintsort.o ../IMlib/ikeysort.o ../IMlib/memory.o ../IMlib/sort.o ../IMlib/util.o /usr/libexec/binutils225/elf/ar: creating ../../libmgrid.a a - coarsen.o a - kwayfm.o a - match.o a - merge.o a - mgridgen.o a - refine.o a - setup.o a - ../IMlib/blas.o a - ../IMlib/dfkeysort.o a - ../IMlib/dkeysort.o a - ../IMlib/file.o a - ../IMlib/ifkeysort.o a - ../IMlib/ifloatsort.o a - ../IMlib/iintsort.o a - ../IMlib/ikeysort.o a - ../IMlib/memory.o a - ../IMlib/sort.o a - ../IMlib/util.o ar -ts ../../libmgrid.a gmake[3]: Leaving directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/MGridGen/Lib' (cd Programs ; gmake ) gmake[3]: Entering directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/MGridGen/Programs' cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include -I/usr/local/mpi/openmpi/include -I../../MGridGen/IMlib -I../Lib -c mgridgen.c mgridgen.c: In function 'main': mgridgen.c:75:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&graph.xadj, &graph.vvol, &graph.vsurf, &graph.adjncy, &graph.adjwgt, &part, LTERM); ^ cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include -I/usr/local/mpi/openmpi/include -I../../MGridGen/IMlib -I../Lib -c io.c cc -L../.. -L/usr/lib/ -L//usr/local/lib/ -L//usr/local/mpi/openmpi/lib -o ../../mgridgen mgridgen.o io.o -lmgrid -lm -pthread chmod 744 ../../mgridgen gmake[3]: Leaving directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/MGridGen/Programs' gmake[2]: Leaving directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/MGridGen' (cd ParMGridGen ; gmake) gmake[2]: Entering directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/ParMGridGen' (cd IMParMetis-2.0 ; gmake ) gmake[3]: Entering directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0' (cd ParMETISLib ; gmake ) gmake[4]: Entering directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib' cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c fused.c fused.c: In function 'ParMETIS_FusedElementGraph': fused.c:55:5: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&graph->vwgt, LTERM); ^ cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c comm.c cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c util.c util.c: In function '___imalloc': util.c:85:17: warning: implicit declaration of function 'IMmalloc' [-Wimplicit-function-declaration] return (int *)IMmalloc(sizeof(int)*n, msg); ^ util.c:85:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (int *)IMmalloc(sizeof(int)*n, msg); ^ util.c: In function '___idxmalloc': util.c:97:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (idxtype *)IMmalloc(sizeof(idxtype)*n, msg); ^ util.c: In function '___fmalloc': util.c:108:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (float *)IMmalloc(sizeof(float)*n, msg); ^ util.c: In function '___realmalloc': util.c:120:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (realtype *)IMmalloc(sizeof(realtype)*n, msg); ^ util.c: In function '___ismalloc': util.c:132:24: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return iset(n, ival, (int *)IMmalloc(sizeof(int)*n, msg)); ^ util.c: In function '___idxsmalloc': util.c:145:26: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return idxset(n, ival, (idxtype *)IMmalloc(sizeof(idxtype)*n, msg)); ^ util.c: In function '___realsmalloc': util.c:156:27: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return realset(n, rval, (realtype *)IMmalloc(sizeof(realtype)*n, msg)); ^ cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c memory.c memory.c: In function '___PreAllocateMemory': memory.c:24:30: warning: implicit declaration of function 'IMmalloc' [-Wimplicit-function-declaration] wspace->core = (idxtype *) IMmalloc(wspace->maxcore, "PreAllocateMemory: wspace->core"); ^ memory.c:24:18: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] wspace->core = (idxtype *) IMmalloc(wspace->maxcore, "PreAllocateMemory: wspace->core"); ^ memory.c:35:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] wspace->pepairs1 = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*(ctrl->nparts+ctrl->npes+1), "PreAllocateMemory: wspace->pepairs?"); ^ memory.c:36:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] wspace->pepairs2 = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*(ctrl->nparts+ctrl->npes+1), "PreAllocateMemory: wspace->pepairs?"); ^ memory.c: In function '___FreeWSpace': memory.c:46:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&wspace->core, ^ memory.c: In function '___CreateGraph': memory.c:74:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] graph = (GraphType *)IMmalloc(sizeof(GraphType), "CreateCoarseGraph: graph"); ^ cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c debug.c cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c setup.c setup.c: In function '___SetUp': setup.c:198:37: warning: implicit declaration of function 'IMmalloc' [-Wimplicit-function-declaration] wspace->pairs = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*wspace->nlarge, "SetUp: wspace->pairs"); ^ setup.c:198:21: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] wspace->pairs = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*wspace->nlarge, "SetUp: wspace->pairs"); ^ cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c diffuse.c diffuse.c: In function '___ParMETIS_RepartLDiffusion': diffuse.c:57:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&graph->vsize, LTERM); ^ cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c grsetup.c grsetup.c: In function '___ComputeMoveStatistics': grsetup.c:143:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&lpvtxs, &gpvtxs, LTERM); ^ cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c timer.c cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c coarsen.c coarsen.c: In function '___Local_CreateCoarseGraph': coarsen.c:308:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&cadjncy, &cadjwgt, &graph->where, LTERM); /* Note that graph->where works fine even if it is NULL */ ^ cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c edge_refine.c edge_refine.c: In function '___ComputePartitionParams': edge_refine.c:152:39: warning: implicit declaration of function 'IMmalloc' [-Wimplicit-function-declaration] rinfo = graph->rinfo = (RInfoType *)IMmalloc(sizeof(RInfoType)*nvtxs, "ComputePartitionParams: rinfo"); ^ edge_refine.c:152:26: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] rinfo = graph->rinfo = (RInfoType *)IMmalloc(sizeof(RInfoType)*nvtxs, "ComputePartitionParams: rinfo"); ^ edge_refine.c: In function '___KWayRefineClean': edge_refine.c:489:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&update, &nupds_pe, &htable, &changed, &pperm, &perm, LTERM); ^ cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c drivers.c cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c remap.c remap.c: In function '___ComputeTotalVReMap1': remap.c:69:29: warning: implicit declaration of function 'IMmalloc' [-Wimplicit-function-declaration] order = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*npes*npes, "ComputeTotalVReMap: order"); ^ remap.c:69:13: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] order = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*npes*npes, "ComputeTotalVReMap: order"); ^ remap.c:73:13: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] order = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*npes, "ComputeTotalVReMap: order"); ^ remap.c:142:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&order, LTERM); ^ cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c iidxsort.c cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c ikeysort.c cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c var.c ar rv ../libIMparmetis.a fused.o comm.o util.o memory.o debug.o setup.o diffuse.o grsetup.o timer.o coarsen.o edge_refine.o drivers.o remap.o iidxsort.o ikeysort.o var.o /usr/libexec/binutils225/elf/ar: creating ../libIMparmetis.a a - fused.o a - comm.o a - util.o a - memory.o a - debug.o a - setup.o a - diffuse.o a - grsetup.o a - timer.o a - coarsen.o a - edge_refine.o a - drivers.o a - remap.o a - iidxsort.o a - ikeysort.o a - var.o ar -ts ../libIMparmetis.a gmake[4]: Leaving directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib' gmake[3]: Leaving directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0' (cd ParLib ; gmake ) gmake[3]: Entering directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/ParLib' cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c comm.c cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c util.c cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c memory.c memory.c: In function 'FreeMGridWSpace___': memory.c:50:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&wspace->core, ^ cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c debug.c cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c setup.c cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c parmgridgen.c parmgridgen.c: In function 'ParMGridGen': parmgridgen.c:110:3: warning: implicit declaration of function 'MGridGen' [-Wimplicit-function-declaration] MGridGen(nvtxs, orxadj, myvvol, orvsurf, oradjncy, oradjwgt, minsize, maxsize, ^ parmgridgen.c:117:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&orxadj, &oradjncy, &oradjwgt, &orvsurf, LTERM); ^ parmgridgen.c: In function 'MoveRefine': parmgridgen.c:272:6: warning: implicit declaration of function 'ParMETIS_FusedElementGraph' [-Wimplicit-function-declaration] ParMETIS_FusedElementGraph(vtxdist, xadj, vvol, vsurf, adjncy, vwgt, adjwgt, ^ parmgridgen.c:378:6: warning: implicit declaration of function 'MGridGenRefine' [-Wimplicit-function-declaration] MGridGenRefine(nvtxs, mgraph->xadj, mgraph->vvol, mgraph->vsurf, mgraph->adjncy, ^ cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c grsetup.c cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c move.c move.c: In function 'MoveMGridGraph___': move.c:241:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&newlabel, &realcore, LTERM); ^ cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c ikeysort.c ar rv ../../libparmgrid.a comm.o util.o memory.o debug.o setup.o parmgridgen.o grsetup.o move.o ikeysort.o ../IMParMetis-2.0/ParMETISLib/fused.o ../IMParMetis-2.0/ParMETISLib/comm.o ../IMParMetis-2.0/ParMETISLib/util.o ../IMParMetis-2.0/ParMETISLib/memory.o ../IMParMetis-2.0/ParMETISLib/debug.o ../IMParMetis-2.0/ParMETISLib/setup.o ../IMParMetis-2.0/ParMETISLib/diffuse.o ../IMParMetis-2.0/ParMETISLib/grsetup.o ../IMParMetis-2.0/ParMETISLib/timer.o ../IMParMetis-2.0/ParMETISLib/coarsen.o ../IMParMetis-2.0/ParMETISLib/edge_refine.o ../IMParMetis-2.0/ParMETISLib/drivers.o ../IMParMetis-2.0/ParMETISLib/remap.o ../IMParMetis-2.0/ParMETISLib/iidxsort.o ../IMParMetis-2.0/ParMETISLib/ikeysort.o ../IMParMetis-2.0/ParMETISLib/var.o /usr/libexec/binutils225/elf/ar: creating ../../libparmgrid.a a - comm.o a - util.o a - memory.o a - debug.o a - setup.o a - parmgridgen.o a - grsetup.o a - move.o a - ikeysort.o a - ../IMParMetis-2.0/ParMETISLib/fused.o a - ../IMParMetis-2.0/ParMETISLib/comm.o a - ../IMParMetis-2.0/ParMETISLib/util.o a - ../IMParMetis-2.0/ParMETISLib/memory.o a - ../IMParMetis-2.0/ParMETISLib/debug.o a - ../IMParMetis-2.0/ParMETISLib/setup.o a - ../IMParMetis-2.0/ParMETISLib/diffuse.o a - ../IMParMetis-2.0/ParMETISLib/grsetup.o a - ../IMParMetis-2.0/ParMETISLib/timer.o a - ../IMParMetis-2.0/ParMETISLib/coarsen.o a - ../IMParMetis-2.0/ParMETISLib/edge_refine.o a - ../IMParMetis-2.0/ParMETISLib/drivers.o a - ../IMParMetis-2.0/ParMETISLib/remap.o a - ../IMParMetis-2.0/ParMETISLib/iidxsort.o a - ../IMParMetis-2.0/ParMETISLib/ikeysort.o a - ../IMParMetis-2.0/ParMETISLib/var.o ar -ts ../../libparmgrid.a gmake[3]: Leaving directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/ParLib' (cd Programs ; gmake ) gmake[3]: Entering directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/Programs' cc -pipe -O2 -fno-strict-aliasing -I../ParLib -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c main.c cc -pipe -O2 -fno-strict-aliasing -I../ParLib -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c parmgridgen.c parmgridgen.c: In function 'TestParMGridGen': parmgridgen.c:57:3: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&graph.vtxdist, &graph.xadj, &graph.vvol, &graph.vsurf, &graph.vwgt, ^ cc -pipe -O2 -fno-strict-aliasing -I../ParLib -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c io.c io.c: In function 'MGridReadTestGraph': io.c:139:5: warning: implicit declaration of function 'IMfree' [-Wimplicit-function-declaration] IMfree(&gxadj, &gvvol, &gvsurf, &gadjncy, &gadjwgt, LTERM); ^ cc -o ../../parmgridgen main.o parmgridgen.o io.o -L../.. -L/usr/lib/ -L//usr/local/lib/ -L//usr/local/mpi/openmpi/lib -lparmgrid -lmgrid -lmpi -lm -pthread chmod 744 ../../parmgridgen gmake[3]: Leaving directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/Programs' gmake[2]: Leaving directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0/ParMGridGen' gmake[1]: Leaving directory '/wrkdirs/math/parmgridgen/ParMGridGen-1.0' =========================================================================== =================================================== =========================================================================== =================================================== ===> Staging for parmgridgen-1.0_10 ===> Generating temporary packing list install -s -m 555 /wrkdirs/math/parmgridgen/ParMGridGen-1.0/mgridgen /wrkdirs/math/parmgridgen/stage/usr/local/bin/mgridgen install -s -m 555 /wrkdirs/math/parmgridgen/ParMGridGen-1.0/parmgridgen /wrkdirs/math/parmgridgen/stage/usr/local/bin/parmgridgen install -s -m 555 /wrkdirs/math/parmgridgen/ParMGridGen-1.0/libmgrid.a /wrkdirs/math/parmgridgen/stage/usr/local/lib/libmgrid.a install -s -m 555 /wrkdirs/math/parmgridgen/ParMGridGen-1.0/libparmgrid.a /wrkdirs/math/parmgridgen/stage/usr/local/lib/libparmgrid.a install -m 0644 /wrkdirs/math/parmgridgen/ParMGridGen-1.0/mgridgen.h /wrkdirs/math/parmgridgen/stage/usr/local/include/mgridgen.h install -m 0644 /wrkdirs/math/parmgridgen/ParMGridGen-1.0/README /wrkdirs/math/parmgridgen/stage/usr/local/share/doc/parmgridgen/README ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===> Building package for parmgridgen-1.0_10 file sizes/checksums [6]: . done packing files [6]: . done packing directories [0]: . done =========================================================================== => Cleaning up wrkdir ===> Cleaning for parmgridgen-1.0_10 build of math/parmgridgen ended at Sun Oct 9 09:08:09 PDT 2016 build time: 00:00:50