=> Building science/openbabel build started at Fri Oct 7 12:45:35 PDT 2016 port directory: /usr/ports/science/openbabel building for: DragonFly pkgbox64.dragonflybsd.org 4.7-DEVELOPMENT DragonFly v4.7.0.78.g7d868-DEVELOPMENT #7: Mon Aug 1 22:25:32 PDT 2016 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 maintained by: makc@FreeBSD.org ident warning: no id keywords in /build/boomdata/data/.m/Release46-default/ref/../05//usr/ports/science/openbabel/Makefile Makefile ident: Poudriere version: 3.1-pre Host OSVERSION: 400700 Jail OSVERSION: 400600 ---Begin Environment--- STATUS=1 SAVED_TERM=screen MASTERMNT=/build/boomdata/data/.m/Release46-default/ref PATH=/usr/local/libexec/poudriere:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/pkg/xorg/bin:/usr/X11R6/bin:/root/bin:/sbin:/usr/sbin POUDRIERE_BUILD_TYPE=bulk PKGNAME=openbabel-2.3.2_2 OLDPWD=/root/boom PWD=/build/boomdata/data/.m/Release46-default/ref/.p/pool MASTERNAME=Release46-default TERM=cons25 USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for openbabel-2.3.2_2: CAIRO=off: PNG support via cairo library PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/science/openbabel XDG_CONFIG_HOME=/wrkdirs/science/openbabel HOME=/wrkdirs/science/openbabel TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/science/openbabel XDG_CONFIG_HOME=/wrkdirs/science/openbabel HOME=/wrkdirs/science/openbabel TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- VERSION="2.3.2" CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly4 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=4.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/openbabel" EXAMPLESDIR="share/examples/openbabel" DATADIR="share/openbabel" WWWDIR="www/openbabel" ETCDIR="etc/openbabel" --End PLIST_SUB-- --SUB_LIST-- CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openbabel DOCSDIR=/usr/local/share/doc/openbabel EXAMPLESDIR=/usr/local/share/examples/openbabel WWWDIR=/usr/local/www/openbabel ETCDIR=/usr/local/etc/openbabel --End SUB_LIST-- ---Begin make.conf--- NO_BACKUP=yes USE_PACKAGE_DEPENDS=yes PKG_CREATE_VERBOSE=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORT_DBDIR=/options PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MAKE_JOBS_NUMBER=5 ---End make.conf--- =================================================== =========================================================================== =================================================== ===> openbabel-2.3.2_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz Installing pkg-1.8.7_3... Extracting pkg-1.8.7_3: .......... done ===> openbabel-2.3.2_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of openbabel-2.3.2_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by openbabel-2.3.2_2 for building =========================================================================== =================================================== ===> Fetching all distfiles required by openbabel-2.3.2_2 for building => SHA256 Checksum OK for openbabel-2.3.2.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by openbabel-2.3.2_2 for building ===> Extracting for openbabel-2.3.2_2 => SHA256 Checksum OK for openbabel-2.3.2.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for openbabel-2.3.2_2 ===> Applying ports patches for openbabel-2.3.2_2 /usr/bin/sed -i.bak -e '/pkgconfig/s,${LIB_INSTALL_DIR},libdata,' /wrkdirs/science/openbabel/openbabel-2.3.2/CMakeLists.txt /usr/bin/sed -i.bak -e 's,share/man,man,' /wrkdirs/science/openbabel/openbabel-2.3.2/doc/CMakeLists.txt /usr/bin/sed -i.bak -e '/find_package(Cairo)/d' /wrkdirs/science/openbabel/openbabel-2.3.2/CMakeLists.txt =========================================================================== =================================================== ===> openbabel-2.3.2_2 depends on file: /usr/local/include/eigen3/Eigen/Eigen - not found ===> Installing existing package /packages/All/eigen-3.2.9.txz Installing eigen-3.2.9... Extracting eigen-3.2.9: .......... done ===> openbabel-2.3.2_2 depends on file: /usr/local/include/eigen3/Eigen/Eigen - found ===> Returning to build of openbabel-2.3.2_2 ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.6.2.txz Installing cmake-3.6.2... `-- Installing expat-2.2.0... `-- Extracting expat-2.2.0: .......... done `-- Installing cmake-modules-3.6.2... `-- Extracting cmake-modules-3.6.2: .......... done `-- Installing curl-7.50.3... | `-- Installing ca_root_nss-3.27... | `-- Extracting ca_root_nss-3.27: ....... done | `-- Installing krb5-1.14.4... | | `-- Installing pkgconf-1.0.1... | | `-- Extracting pkgconf-1.0.1: .......... done | | `-- Installing gettext-runtime-0.19.8.1... | | `-- Installing indexinfo-0.2.5... | | `-- Extracting indexinfo-0.2.5: .... done | | `-- Extracting gettext-runtime-0.19.8.1: .......... done | `-- Extracting krb5-1.14.4: .......... done `-- Extracting curl-7.50.3: .......... done `-- Installing libarchive-3.2.1,1... | `-- Installing liblz4-131... | `-- Extracting liblz4-131: .......... done | `-- Installing lzo2-2.09... | `-- Extracting lzo2-2.09: .......... done `-- Extracting libarchive-3.2.1,1: .......... done `-- Installing jsoncpp-1.7.3... `-- Extracting jsoncpp-1.7.3: .......... done `-- Installing ncurses-6.0_5... `-- Extracting ncurses-6.0_5: .......... done Extracting cmake-3.6.2: .......... done Message from ca_root_nss-3.27: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from ncurses-6.0_5: ===> NOTICE: The ncurses port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/cmake - found ===> Returning to build of openbabel-2.3.2_2 ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/python2.7 - not found ===> Installing existing package /packages/All/python27-2.7.12.txz Installing python27-2.7.12... `-- Installing readline-6.3.8... `-- Extracting readline-6.3.8: .......... done `-- Installing libffi-3.2.1... `-- Extracting libffi-3.2.1: .......... done Extracting python27-2.7.12: .......... done Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/python2.7 - found ===> Returning to build of openbabel-2.3.2_2 =========================================================================== =================================================== ===> openbabel-2.3.2_2 depends on shared library: libxml2.so - not found ===> Installing existing package /packages/All/libxml2-2.9.4.txz Installing libxml2-2.9.4... Extracting libxml2-2.9.4: .......... done ===> openbabel-2.3.2_2 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Returning to build of openbabel-2.3.2_2 =========================================================================== =================================================== ===> Configuring for openbabel-2.3.2_2 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/science/openbabel/.build -- The C compiler identification is GNU 5.3.1 -- The CXX compiler identification is GNU 5.3.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Using included inchi library. -- Found LibXml2: /usr/local/lib/libxml2.so (found version "2.9.4") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.8") -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") -- Could NOT find Cairo. PNG output will NOT be supported. -- Looking for getopt -- Looking for getopt - found -- GUI will not be built CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /wrkdirs/science/openbabel/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:14 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /wrkdirs/science/openbabel/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:31 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /wrkdirs/science/openbabel/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:25 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /wrkdirs/science/openbabel/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:39 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python2.7 (found version "2.7.12") -- Found PythonLibs: /usr/local/lib/libpython2.7.so (found version "2.7.12") -- Python bindings will be compiled -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_DEBUG THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/science/openbabel/.build =========================================================================== =================================================== ===> Building for openbabel-2.3.2_2 /usr/local/bin/cmake -H/wrkdirs/science/openbabel/openbabel-2.3.2 -B/wrkdirs/science/openbabel/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/science/openbabel/.build/CMakeFiles /wrkdirs/science/openbabel/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- src/CMakeFiles/openbabel.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/CMakeFiles/openbabel.dir/all --- /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- /usr/bin/make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend --- src/formats/libinchi/CMakeFiles/inchi.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats/libinchi /wrkdirs/science/openbabel/.build/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src /wrkdirs/science/openbabel/.build/src/CMakeFiles/openbabel.dir/DependInfo.cmake --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- Scanning dependencies of target inchi /usr/bin/make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/build --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.o --- [ 0%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.o --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.o --- src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.o --- src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.o --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.o --- cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichi_bns.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.o --- cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichi_io.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichi_io.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.o --- cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichican2.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichican2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.o --- cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichicano.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichicano.c --- src/CMakeFiles/openbabel.dir/all --- Scanning dependencies of target openbabel /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build --- src/CMakeFiles/openbabel.dir/alias.o --- [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/alias.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/alias.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/alias.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichicans.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichicans.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiisot.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichiisot.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichilnct.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichilnct.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimak2.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichimak2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimake.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichimake.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimap1.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichimap1.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimap2.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichimap2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimap4.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichimap4.c --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/atom.o --- [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/atom.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/atom.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/atom.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichinorm.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichinorm.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiparm.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichiparm.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiprt1.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiprt2.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiprt3.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiqueu.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiread.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichiread.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiring.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichiring.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr1.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/base.o --- [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/base.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/base.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.o --- [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr2.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.o --- [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr3.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/bitvec.o --- [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/bitvec.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/bitvec.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.o --- [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr4.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.o --- [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr5.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/bond.o --- [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/bond.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/bond.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/bond.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.o --- [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr6.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.o --- [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.o cd 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-fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/bondtyper.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/bondtyper.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichister.o --- [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichister.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichister.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.o --- [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichitaut.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ichitaut.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.o --- [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ikey_base26.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ikey_base26.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.o --- [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ikey_dll.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/ikey_dll.c --- src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.o --- [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/inchi_dll.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c --- src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.o --- [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/inchi_dll_a.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a.c --- src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.o --- [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/inchi_dll_a2.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/builder.o --- [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/builder.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/builder.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/builder.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.o --- [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/inchi_dll_main.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/inchi_dll_main.c --- src/formats/libinchi/CMakeFiles/inchi.dir/runichi.o --- [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/runichi.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/runichi.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/runichi.c --- src/formats/libinchi/CMakeFiles/inchi.dir/sha2.o --- [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/sha2.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/sha2.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/sha2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/strutil.o --- [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/strutil.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/strutil.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/strutil.c --- src/formats/libinchi/CMakeFiles/inchi.dir/util.o --- [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/util.o cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/util.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi/util.c --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/canon.o --- [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/canon.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/canon.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/canon.cpp --- src/CMakeFiles/openbabel.dir/chains.o --- [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/chains.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/chains.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/chains.cpp --- src/CMakeFiles/openbabel.dir/chargemodel.o --- [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/chargemodel.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/chargemodel.cpp --- src/CMakeFiles/openbabel.dir/chiral.o --- [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/chiral.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/chiral.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/chiral.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- lib/libinchi.so.0.4.1 --- [ 9%] Linking C shared library ../../../lib/libinchi.so cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/inchi.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libinchi.so.0 -o ../../../lib/libinchi.so.0.4.1 CMakeFiles/inchi.dir/ichi_bns.o CMakeFiles/inchi.dir/ichi_io.o CMakeFiles/inchi.dir/ichican2.o CMakeFiles/inchi.dir/ichicano.o CMakeFiles/inchi.dir/ichicans.o CMakeFiles/inchi.dir/ichiisot.o CMakeFiles/inchi.dir/ichilnct.o CMakeFiles/inchi.dir/ichimak2.o CMakeFiles/inchi.dir/ichimake.o CMakeFiles/inchi.dir/ichimap1.o CMakeFiles/inchi.dir/ichimap2.o CMakeFiles/inchi.dir/ichimap4.o CMakeFiles/inchi.dir/ichinorm.o CMakeFiles/inchi.dir/ichiparm.o CMakeFiles/inchi.dir/ichiprt1.o CMakeFiles/inchi.dir/ichiprt2.o CMakeFiles/inchi.dir/ichiprt3.o CMakeFiles/inchi.dir/ichiqueu.o CMakeFiles/inchi.dir/ichiread.o CMakeFiles/inchi.dir/ichiring.o CMakeFiles/inchi.dir/ichirvr1.o CMakeFiles/inchi.dir/ichirvr2.o CMakeFiles/inchi.dir/ichirvr3.o CMakeFiles/inchi.dir/ichirvr4.o CMakeFiles/inchi.dir/ichirvr5.o CMakeFiles/inchi.dir/ichirvr6.o CMakeFiles/inchi.dir/ichirvr7.o CMakeFiles/inchi.dir/ichisort.o CMakeFiles/inchi.dir/ichister.o CMakeFiles/inchi.dir/ichitaut.o CMakeFiles/inchi.dir/ikey_base26.o CMakeFiles/inchi.dir/ikey_dll.o CMakeFiles/inchi.dir/inchi_dll.o CMakeFiles/inchi.dir/inchi_dll_a.o CMakeFiles/inchi.dir/inchi_dll_a2.o CMakeFiles/inchi.dir/inchi_dll_main.o CMakeFiles/inchi.dir/runichi.o CMakeFiles/inchi.dir/sha2.o CMakeFiles/inchi.dir/strutil.o CMakeFiles/inchi.dir/util.o -lm -ldl -lz -lc cd /wrkdirs/science/openbabel/.build/src/formats/libinchi && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libinchi.so.0.4.1 ../../../lib/libinchi.so.0 ../../../lib/libinchi.so [ 9%] Built target inchi --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/data.o --- [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/data.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/data.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/data.cpp --- src/CMakeFiles/openbabel.dir/descriptor.o --- [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/descriptor.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/descriptor.cpp --- 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-I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/forcefield.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/forcefield.cpp --- src/CMakeFiles/openbabel.dir/format.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/format.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/format.o -c 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-pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/obconversion.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/obconversion.cpp --- src/CMakeFiles/openbabel.dir/oberror.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/oberror.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/oberror.cpp --- src/CMakeFiles/openbabel.dir/obiter.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/obiter.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/obiter.cpp --- src/CMakeFiles/openbabel.dir/obutil.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/obutil.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/obutil.cpp --- src/CMakeFiles/openbabel.dir/op.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/op.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/op.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/op.cpp --- src/CMakeFiles/openbabel.dir/parsmart.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/parsmart.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/parsmart.cpp --- src/CMakeFiles/openbabel.dir/patty.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/patty.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/patty.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/patty.cpp --- src/CMakeFiles/openbabel.dir/phmodel.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/phmodel.o -c 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CMakeFiles/openbabel.dir/query.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/query.cpp --- src/CMakeFiles/openbabel.dir/rand.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/rand.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/rand.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/rand.cpp --- src/CMakeFiles/openbabel.dir/residue.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/residue.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL 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/usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/transform.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/transform.cpp --- src/CMakeFiles/openbabel.dir/typer.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/typer.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 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src/CMakeFiles/openbabel.dir/conformersearch.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/conformersearch.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/conformersearch.cpp --- src/CMakeFiles/openbabel.dir/dlhandler_unix.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/dlhandler_unix.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/dlhandler_unix.cpp --- src/CMakeFiles/openbabel.dir/depict/depict.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/depict/depict.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/depict/depict.cpp --- src/CMakeFiles/openbabel.dir/depict/svgpainter.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/depict/svgpainter.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/depict/svgpainter.cpp --- src/CMakeFiles/openbabel.dir/math/matrix3x3.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/math/matrix3x3.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/math/matrix3x3.cpp --- src/CMakeFiles/openbabel.dir/math/spacegroup.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 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-I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/math/align.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/math/align.cpp --- src/CMakeFiles/openbabel.dir/stereo/stereo.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/stereo/stereo.o -c 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-I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/fingerprints/finger2.cpp --- src/CMakeFiles/plugin_charges.dir/all --- Scanning dependencies of target plugin_charges --- src/CMakeFiles/plugin_ops.dir/all --- Scanning dependencies of target plugin_ops --- src/CMakeFiles/plugin_charges.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build --- src/CMakeFiles/plugin_ops.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/eem.o --- --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/addfilename.o --- [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/addfilename.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/addfilename.cpp --- src/CMakeFiles/plugin_charges.dir/all --- [ 19%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_charges_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_charges.dir/charges/eem.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/charges/eem.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/addinindex.o --- [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 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src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_descriptors_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/descriptors/groupcontrib.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/gasteiger.o --- [ 20%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_charges_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_charges.dir/charges/gasteiger.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/charges/gasteiger.cpp --- src/CMakeFiles/plugin_fingerprints.dir/all --- --- src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o --- [ 20%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_fingerprints_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/fingerprints/finger3.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/canonical.o --- [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/canonical.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/canonical.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/none.o --- [ 21%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_charges_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_charges.dir/charges/none.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/charges/none.cpp --- src/CMakeFiles/plugin_descriptors.dir/all --- --- src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.o --- [ 21%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_descriptors_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/descriptors/filters.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/gen2D.o --- [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS 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/wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake Scanning dependencies of target xmlformat /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/fillUC.o --- [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/fillUC.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/fillUC.cpp --- src/formats/CMakeFiles/xmlformat.dir/all --- --- src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.o --- [ 21%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dxmlformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC 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src/CMakeFiles/plugin_ops.dir/ops/forcefield.o --- [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/forcefield.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/forcefield.cpp --- src/CMakeFiles/plugin_descriptors.dir/all --- --- src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o --- [ 21%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_descriptors_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/descriptors/smartsdescriptors.cpp --- src/formats/CMakeFiles/xmlformat.dir/all --- --- src/formats/CMakeFiles/xmlformat.dir/xml/xml.o --- [ 21%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dxmlformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/xmlformat.dir/xml/xml.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/xml/xml.cpp --- src/CMakeFiles/plugin_forcefields.dir/all --- --- src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o --- [ 22%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_forcefields_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/forcefields/forcefieldghemical.cpp --- src/CMakeFiles/plugin_descriptors.dir/all --- --- lib/plugin_descriptors.so --- [ 22%] Linking CXX shared module ../lib/plugin_descriptors.so cd /wrkdirs/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../lib/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o -lm -ldl -lz ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 23%] Built target plugin_descriptors --- src/formats/CMakeFiles/pubchem.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend --- src/formats/CMakeFiles/pubchem.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake Scanning dependencies of target pubchem /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build --- src/formats/CMakeFiles/pubchem.dir/xml/pubchem.o --- [ 23%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dpubchem_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/pubchem.dir/xml/pubchem.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/xml/pubchem.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/gen3d.o --- [ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/gen3d.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/gen3d.cpp --- src/formats/CMakeFiles/xmlformat.dir/all --- --- lib/xmlformat.so --- [ 24%] Linking CXX shared module ../../lib/xmlformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/xmlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/xmlformat.so CMakeFiles/xmlformat.dir/xml/xmlformat.o CMakeFiles/xmlformat.dir/xml/xml.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm /usr/local/lib/libxml2.so ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib:/usr/local/lib [ 25%] Built target xmlformat --- src/formats/CMakeFiles/cdxmlformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend --- src/formats/CMakeFiles/cdxmlformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake Scanning dependencies of target cdxmlformat /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build --- src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o --- [ 25%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dcdxmlformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/xml/cdxmlformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/largest.o --- [ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/largest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/largest.cpp --- src/formats/CMakeFiles/pubchem.dir/all --- --- src/formats/CMakeFiles/pubchem.dir/xml/xml.o --- [ 25%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ 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-I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/cdxmlformat.dir/xml/xml.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/xml/xml.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/loader.o --- [ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/loader.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/loader.cpp --- src/formats/CMakeFiles/pubchem.dir/all --- --- lib/pubchem.so --- [ 26%] Linking CXX shared module ../../lib/pubchem.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pubchem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/pubchem.so CMakeFiles/pubchem.dir/xml/pubchem.o CMakeFiles/pubchem.dir/xml/xml.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm /usr/local/lib/libxml2.so ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib:/usr/local/lib [ 26%] Built target pubchem --- src/formats/CMakeFiles/chemkinformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend --- src/formats/CMakeFiles/chemkinformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake Scanning dependencies of target chemkinformat /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build --- src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.o --- [ 26%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dchemkinformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/chemkinformat.dir/chemkinformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/chemkinformat.cpp --- src/formats/CMakeFiles/cdxmlformat.dir/all --- --- lib/cdxmlformat.so --- [ 26%] Linking CXX shared module ../../lib/cdxmlformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cdxmlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/cdxmlformat.so CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o CMakeFiles/cdxmlformat.dir/xml/xml.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm /usr/local/lib/libxml2.so ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib:/usr/local/lib [ 26%] Built target cdxmlformat --- src/formats/CMakeFiles/CSRformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend --- src/formats/CMakeFiles/CSRformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake Scanning dependencies of target CSRformat /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build --- src/formats/CMakeFiles/CSRformat.dir/CSRformat.o --- [ 26%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/CSRformat.dir/CSRformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/CSRformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/optransform.o --- [ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/optransform.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/optransform.cpp --- src/CMakeFiles/plugin_forcefields.dir/all --- --- src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o --- [ 26%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_forcefields_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp --- src/formats/CMakeFiles/CSRformat.dir/all --- --- lib/CSRformat.so --- [ 26%] Linking CXX shared module ../../lib/CSRformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 26%] Built target CSRformat --- src/formats/CMakeFiles/PQSformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend --- src/formats/CMakeFiles/PQSformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake Scanning dependencies of target PQSformat /usr/bin/make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build --- src/formats/CMakeFiles/PQSformat.dir/PQSformat.o --- [ 27%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/PQSformat.dir/PQSformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/PQSformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/partialcharges.o --- [ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS 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-Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 27%] Built target PQSformat --- src/formats/CMakeFiles/nulformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend --- src/formats/CMakeFiles/nulformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake Scanning dependencies of target nulformat /usr/bin/make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build --- src/formats/CMakeFiles/nulformat.dir/nulformat.o --- [ 27%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ 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CMakeFiles/nulformat.dir/nulformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 28%] Built target nulformat --- src/formats/CMakeFiles/APIInterface.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend --- src/formats/CMakeFiles/APIInterface.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake Scanning dependencies of target APIInterface /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build --- src/formats/CMakeFiles/APIInterface.dir/APIInterface.o --- [ 28%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/APIInterface.dir/APIInterface.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/APIInterface.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/readconformers.o --- [ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/readconformers.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/readconformers.cpp --- src/formats/CMakeFiles/APIInterface.dir/all --- --- lib/APIInterface.so --- [ 28%] Linking CXX shared module ../../lib/APIInterface.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 28%] Built target APIInterface --- src/formats/CMakeFiles/cmlreactformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend --- src/formats/CMakeFiles/cmlreactformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake Scanning dependencies of target cmlreactformat /usr/bin/make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build --- src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o --- [ 29%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dcmlreactformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/xml/cmlreactformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/sort.o --- [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/sort.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/sort.cpp --- src/formats/CMakeFiles/chemkinformat.dir/all --- --- lib/chemkinformat.so --- [ 30%] Linking CXX shared module ../../lib/chemkinformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chemkinformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/chemkinformat.so CMakeFiles/chemkinformat.dir/chemkinformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 30%] Built target chemkinformat --- src/formats/CMakeFiles/castepformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend --- src/formats/CMakeFiles/castepformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake Scanning dependencies of target castepformat /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build --- src/formats/CMakeFiles/castepformat.dir/castepformat.o --- [ 30%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dcastepformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/castepformat.dir/castepformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/castepformat.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/qtpie.o --- [ 30%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_charges_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_charges.dir/charges/qtpie.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/charges/qtpie.cpp --- src/formats/CMakeFiles/castepformat.dir/all --- --- lib/castepformat.so --- [ 31%] Linking CXX shared module ../../lib/castepformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/castepformat.so CMakeFiles/castepformat.dir/castepformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 31%] Built target castepformat --- src/formats/CMakeFiles/thermoformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend --- src/formats/CMakeFiles/thermoformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake Scanning dependencies of target thermoformat /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build --- src/formats/CMakeFiles/thermoformat.dir/thermoformat.o --- [ 31%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dthermoformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/thermoformat.dir/thermoformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/thermoformat.cpp --- src/formats/CMakeFiles/cmlreactformat.dir/all --- --- src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.o --- [ 31%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dcmlreactformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/cmlreactformat.dir/xml/xml.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/xml/xml.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/opisomorph.o --- [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/opisomorph.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/opisomorph.cpp --- src/formats/CMakeFiles/thermoformat.dir/all --- --- lib/thermoformat.so --- [ 32%] Linking CXX shared module ../../lib/thermoformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 33%] Built target thermoformat --- src/formats/CMakeFiles/jaguarformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend --- src/formats/CMakeFiles/jaguarformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake Scanning dependencies of target jaguarformat /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build --- src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.o --- [ 33%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Djaguarformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/jaguarformat.dir/jaguarformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/jaguarformat.cpp --- src/formats/CMakeFiles/cmlreactformat.dir/all --- --- lib/cmlreactformat.so --- [ 33%] Linking CXX shared module ../../lib/cmlreactformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmlreactformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/cmlreactformat.so CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o CMakeFiles/cmlreactformat.dir/xml/xml.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm /usr/local/lib/libxml2.so ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib:/usr/local/lib [ 33%] Built target cmlreactformat --- src/formats/CMakeFiles/abinitformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend --- src/formats/CMakeFiles/abinitformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake Scanning dependencies of target abinitformat /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build --- src/formats/CMakeFiles/abinitformat.dir/abinitformat.o --- [ 33%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dabinitformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/abinitformat.dir/abinitformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/abinitformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/ophighlight.o --- [ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.o --- src/formats/CMakeFiles/jaguarformat.dir/all --- --- lib/jaguarformat.so --- [ 33%] Linking CXX shared module ../../lib/jaguarformat.so --- src/CMakeFiles/plugin_ops.dir/all --- cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER 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jaguarformat --- src/formats/CMakeFiles/gausscubeformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend --- src/formats/CMakeFiles/gausscubeformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake Scanning dependencies of target gausscubeformat /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build --- src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.o --- [ 33%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dgausscubeformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/gausscubeformat.dir/gausscubeformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/gausscubeformat.cpp --- src/CMakeFiles/plugin_forcefields.dir/all --- --- src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o --- [ 33%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ 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../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 33%] Built target abinitformat --- src/formats/CMakeFiles/nwchemformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend --- src/formats/CMakeFiles/nwchemformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake Scanning dependencies of target nwchemformat /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build --- src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.o --- [ 33%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dnwchemformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/nwchemformat.dir/nwchemformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/nwchemformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/xout.o --- [ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/xout.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/xout.cpp --- src/CMakeFiles/plugin_ops.dir/ops/conformer.o --- [ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/conformer.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/conformer.cpp --- src/formats/CMakeFiles/nwchemformat.dir/all --- --- lib/nwchemformat.so --- [ 33%] Linking CXX shared module ../../lib/nwchemformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 33%] Built target nwchemformat --- src/formats/CMakeFiles/mdlformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend --- src/formats/CMakeFiles/mdlformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake Scanning dependencies of target mdlformat /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build --- src/formats/CMakeFiles/mdlformat.dir/mdlformat.o --- [ 33%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmdlformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/mdlformat.dir/mdlformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/mdlformat.cpp --- src/formats/CMakeFiles/gausscubeformat.dir/all --- --- lib/gausscubeformat.so --- [ 34%] Linking CXX shared module ../../lib/gausscubeformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 34%] Built target gausscubeformat --- src/formats/CMakeFiles/molreport.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend --- src/formats/CMakeFiles/molreport.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake Scanning dependencies of target molreport /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build --- src/formats/CMakeFiles/molreport.dir/molreport.o --- [ 35%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmolreport_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/molreport.dir/molreport.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/molreport.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/opalign.o --- [ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.o cd /wrkdirs/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/opalign.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/opalign.cpp --- src/formats/CMakeFiles/molreport.dir/all --- --- lib/molreport.so --- [ 35%] Linking CXX shared module ../../lib/molreport.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/molreport.so CMakeFiles/molreport.dir/molreport.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 35%] Built target molreport --- src/formats/CMakeFiles/hinformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend --- src/formats/CMakeFiles/hinformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake Scanning dependencies of target hinformat /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build --- src/formats/CMakeFiles/hinformat.dir/hinformat.o --- [ 35%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ 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-O2 -DNDEBUG -shared -o ../lib/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o -lm -ldl -lz ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 35%] Built target plugin_forcefields --- src/formats/CMakeFiles/mopacformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend --- src/formats/CMakeFiles/mopacformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats 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-fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/mopacformat.dir/mopacformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/mopacformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- [ 35%] Linking CXX shared module ../lib/plugin_ops.so cd /wrkdirs/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../lib/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.o CMakeFiles/plugin_ops.dir/ops/addinindex.o CMakeFiles/plugin_ops.dir/ops/addpolarh.o CMakeFiles/plugin_ops.dir/ops/canonical.o CMakeFiles/plugin_ops.dir/ops/gen2D.o CMakeFiles/plugin_ops.dir/ops/fillUC.o CMakeFiles/plugin_ops.dir/ops/forcefield.o CMakeFiles/plugin_ops.dir/ops/gen3d.o CMakeFiles/plugin_ops.dir/ops/largest.o CMakeFiles/plugin_ops.dir/ops/loader.o 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../../lib/hinformat.so CMakeFiles/hinformat.dir/hinformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- src/formats/CMakeFiles/gausszmatformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend --- src/formats/CMakeFiles/gausszmatformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake Scanning dependencies of target gausszmatformat /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build --- src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.o --- [ 36%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dgausszmatformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/gausszmatformat.dir/gausszmatformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/gausszmatformat.cpp --- src/formats/CMakeFiles/hinformat.dir/all --- [ 36%] Built target hinformat --- src/formats/CMakeFiles/fhiaimsformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend --- src/formats/CMakeFiles/fhiaimsformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake Scanning dependencies of target fhiaimsformat /usr/bin/make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build --- src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o --- [ 36%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN 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../lib/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.o CMakeFiles/plugin_charges.dir/charges/gasteiger.o CMakeFiles/plugin_charges.dir/charges/none.o CMakeFiles/plugin_charges.dir/charges/mmff94.o CMakeFiles/plugin_charges.dir/charges/qeq.o CMakeFiles/plugin_charges.dir/charges/qtpie.o -lm -ldl -lz ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 36%] Built target plugin_charges --- src/formats/CMakeFiles/copyformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend --- src/formats/CMakeFiles/copyformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats 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/wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake Scanning dependencies of target gamessformat /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build --- src/formats/CMakeFiles/gamessformat.dir/gamessformat.o --- [ 37%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dgamessformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/gamessformat.dir/gamessformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/gamessformat.cpp --- src/formats/CMakeFiles/fhiaimsformat.dir/all --- --- lib/fhiaimsformat.so --- [ 38%] Linking CXX shared module ../../lib/fhiaimsformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 38%] Built target fhiaimsformat --- src/formats/CMakeFiles/tinkerformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend --- src/formats/CMakeFiles/tinkerformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake Scanning dependencies of target tinkerformat /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build --- src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.o --- [ 38%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS 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CMakeFiles/gausszmatformat.dir/gausszmatformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 39%] Built target gausszmatformat --- src/formats/CMakeFiles/dmolformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend --- src/formats/CMakeFiles/dmolformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake Scanning dependencies of target dmolformat /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build --- src/formats/CMakeFiles/dmolformat.dir/dmolformat.o --- [ 40%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Ddmolformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/dmolformat.dir/dmolformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/dmolformat.cpp --- src/formats/CMakeFiles/mdlformat.dir/all --- --- lib/mdlformat.so --- [ 40%] Linking CXX shared module ../../lib/mdlformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 40%] Built target mdlformat --- src/formats/CMakeFiles/xyzformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend --- src/formats/CMakeFiles/xyzformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake Scanning dependencies of target xyzformat /usr/bin/make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build --- src/formats/CMakeFiles/xyzformat.dir/xyzformat.o --- [ 40%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dxyzformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/xyzformat.dir/xyzformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/xyzformat.cpp --- src/formats/CMakeFiles/tinkerformat.dir/all --- --- lib/tinkerformat.so --- [ 40%] Linking CXX shared module ../../lib/tinkerformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 40%] Built target tinkerformat --- src/formats/CMakeFiles/turbomoleformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend --- src/formats/CMakeFiles/turbomoleformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake Scanning dependencies of target turbomoleformat /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build --- src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.o --- [ 40%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dturbomoleformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/turbomoleformat.dir/turbomoleformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/turbomoleformat.cpp --- src/formats/CMakeFiles/dmolformat.dir/all --- --- lib/dmolformat.so --- [ 40%] Linking CXX shared module ../../lib/dmolformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- src/formats/CMakeFiles/mopacformat.dir/all --- --- lib/mopacformat.so --- [ 40%] Linking CXX shared module ../../lib/mopacformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- src/formats/CMakeFiles/dmolformat.dir/all --- [ 40%] Built target dmolformat --- src/formats/CMakeFiles/mol2format.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend --- src/formats/CMakeFiles/mol2format.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 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/wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/mol2format.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build --- src/formats/CMakeFiles/mol2format.dir/mol2format.o --- --- src/formats/CMakeFiles/amberformat.dir/all --- Scanning dependencies of target amberformat /usr/bin/make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build --- src/formats/CMakeFiles/mol2format.dir/all --- [ 40%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmol2format_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/mol2format.dir/mol2format.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/mol2format.cpp --- src/formats/CMakeFiles/amberformat.dir/all --- --- src/formats/CMakeFiles/amberformat.dir/amberformat.o --- [ 40%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Damberformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/amberformat.dir/amberformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/amberformat.cpp --- src/formats/CMakeFiles/xyzformat.dir/all --- --- lib/xyzformat.so --- [ 40%] Linking CXX shared module ../../lib/xyzformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/xyzformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/xyzformat.so CMakeFiles/xyzformat.dir/xyzformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 41%] Built target xyzformat --- src/formats/CMakeFiles/vaspformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend --- src/formats/CMakeFiles/vaspformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake Scanning dependencies of target vaspformat /usr/bin/make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build --- src/formats/CMakeFiles/vaspformat.dir/vaspformat.o --- [ 41%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dvaspformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/vaspformat.dir/vaspformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/vaspformat.cpp --- src/formats/CMakeFiles/turbomoleformat.dir/all --- --- lib/turbomoleformat.so --- [ 41%] Linking CXX shared module ../../lib/turbomoleformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 41%] Built target turbomoleformat --- src/formats/CMakeFiles/fastaformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend --- src/formats/CMakeFiles/fastaformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake Scanning dependencies of target fastaformat /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build --- src/formats/CMakeFiles/fastaformat.dir/fastaformat.o --- [ 41%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dfastaformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/fastaformat.dir/fastaformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/fastaformat.cpp --- src/formats/CMakeFiles/amberformat.dir/all --- --- lib/amberformat.so --- [ 42%] Linking CXX shared module ../../lib/amberformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/amberformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/amberformat.so CMakeFiles/amberformat.dir/amberformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 42%] Built target amberformat --- src/formats/CMakeFiles/fpsformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend --- src/formats/CMakeFiles/fpsformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake Scanning dependencies of target fpsformat /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build --- src/formats/CMakeFiles/fpsformat.dir/fpsformat.o --- [ 42%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dfpsformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/fpsformat.dir/fpsformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/fpsformat.cpp --- src/formats/CMakeFiles/fastaformat.dir/all --- --- lib/fastaformat.so --- [ 42%] Linking CXX shared module ../../lib/fastaformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 42%] Built target fastaformat --- src/formats/CMakeFiles/povrayformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend --- src/formats/CMakeFiles/povrayformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake Scanning dependencies of target povrayformat /usr/bin/make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build --- src/formats/CMakeFiles/povrayformat.dir/povrayformat.o --- [ 42%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dpovrayformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/povrayformat.dir/povrayformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/povrayformat.cpp --- src/formats/CMakeFiles/mol2format.dir/all --- --- lib/mol2format.so --- [ 42%] Linking CXX shared module ../../lib/mol2format.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/mol2format.so CMakeFiles/mol2format.dir/mol2format.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 42%] Built target mol2format --- src/formats/CMakeFiles/smilesformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend --- src/formats/CMakeFiles/smilesformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake Scanning dependencies of target smilesformat /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build --- src/formats/CMakeFiles/smilesformat.dir/smilesformat.o --- [ 42%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dsmilesformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/smilesformat.dir/smilesformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/smilesformat.cpp --- src/formats/CMakeFiles/gamessformat.dir/all --- --- lib/gamessformat.so --- [ 43%] Linking CXX shared module ../../lib/gamessformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 43%] Built target gamessformat --- src/formats/CMakeFiles/bgfformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend --- src/formats/CMakeFiles/bgfformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake Scanning dependencies of target bgfformat /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build --- src/formats/CMakeFiles/bgfformat.dir/bgfformat.o --- [ 44%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dbgfformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/bgfformat.dir/bgfformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/bgfformat.cpp --- src/formats/CMakeFiles/fpsformat.dir/all --- --- lib/fpsformat.so --- [ 45%] Linking CXX shared module ../../lib/fpsformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 45%] Built target fpsformat --- src/formats/CMakeFiles/ghemicalformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend --- src/formats/CMakeFiles/ghemicalformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake Scanning dependencies of target ghemicalformat /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build --- src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.o --- [ 45%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dghemicalformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/ghemicalformat.dir/ghemicalformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/ghemicalformat.cpp --- src/formats/CMakeFiles/vaspformat.dir/all --- --- lib/vaspformat.so --- [ 45%] Linking CXX shared module ../../lib/vaspformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 45%] Built target vaspformat --- src/formats/CMakeFiles/MNAformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend --- src/formats/CMakeFiles/MNAformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake Scanning dependencies of target MNAformat /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build --- src/formats/CMakeFiles/MNAformat.dir/MNAformat.o --- [ 45%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/MNAformat.dir/MNAformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/MNAformat.cpp --- src/formats/CMakeFiles/ghemicalformat.dir/all --- --- lib/ghemicalformat.so --- [ 45%] Linking CXX shared module ../../lib/ghemicalformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 45%] Built target ghemicalformat --- src/formats/CMakeFiles/chemdrawct.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend --- src/formats/CMakeFiles/chemdrawct.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake Scanning dependencies of target chemdrawct /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build --- src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.o --- [ 45%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dchemdrawct_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/chemdrawct.dir/chemdrawct.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/chemdrawct.cpp --- src/formats/CMakeFiles/povrayformat.dir/all --- --- lib/povrayformat.so --- [ 45%] Linking CXX shared module ../../lib/povrayformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 45%] Built target povrayformat --- src/formats/CMakeFiles/textformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend --- src/formats/CMakeFiles/textformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake Scanning dependencies of target textformat /usr/bin/make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build --- src/formats/CMakeFiles/textformat.dir/textformat.o --- [ 45%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dtextformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/textformat.dir/textformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/textformat.cpp --- src/formats/CMakeFiles/bgfformat.dir/all --- --- lib/bgfformat.so --- [ 45%] Linking CXX shared module ../../lib/bgfformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/bgfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 45%] Built target bgfformat --- src/formats/CMakeFiles/opendxformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend --- src/formats/CMakeFiles/opendxformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake Scanning dependencies of target opendxformat /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build --- src/formats/CMakeFiles/opendxformat.dir/opendxformat.o --- [ 45%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dopendxformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/opendxformat.dir/opendxformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/opendxformat.cpp --- src/formats/CMakeFiles/MNAformat.dir/all --- --- lib/MNAformat.so --- [ 45%] Linking CXX shared module ../../lib/MNAformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 45%] Built target MNAformat --- src/formats/CMakeFiles/cacaoformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend --- src/formats/CMakeFiles/cacaoformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake Scanning dependencies of target cacaoformat /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build --- src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.o --- [ 45%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dcacaoformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/cacaoformat.dir/cacaoformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/cacaoformat.cpp --- src/formats/CMakeFiles/textformat.dir/all --- --- lib/textformat.so --- [ 45%] Linking CXX shared module ../../lib/textformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/textformat.so CMakeFiles/textformat.dir/textformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 45%] Built target textformat --- src/formats/CMakeFiles/pngformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend --- src/formats/CMakeFiles/pngformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake Scanning dependencies of target pngformat /usr/bin/make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build --- src/formats/CMakeFiles/pngformat.dir/pngformat.o --- [ 45%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dpngformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/pngformat.dir/pngformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/pngformat.cpp --- src/formats/CMakeFiles/chemdrawct.dir/all --- --- lib/chemdrawct.so --- [ 45%] Linking CXX shared module ../../lib/chemdrawct.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 45%] Built target chemdrawct --- src/formats/CMakeFiles/MCDLformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend --- src/formats/CMakeFiles/MCDLformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake Scanning dependencies of target MCDLformat /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build --- src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.o --- [ 46%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ 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CMakeFiles/cacaoformat.dir/cacaoformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 46%] Built target cacaoformat --- src/formats/CMakeFiles/alchemyformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend --- src/formats/CMakeFiles/alchemyformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake Scanning dependencies of target alchemyformat /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build --- src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.o --- [ 46%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dalchemyformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/alchemyformat.dir/alchemyformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/alchemyformat.cpp --- src/formats/CMakeFiles/opendxformat.dir/all --- --- lib/opendxformat.so --- [ 46%] Linking CXX shared module ../../lib/opendxformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 46%] Built target opendxformat --- src/formats/CMakeFiles/svgformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend --- src/formats/CMakeFiles/svgformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake Scanning dependencies of target svgformat /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build --- src/formats/CMakeFiles/svgformat.dir/svgformat.o --- [ 46%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dsvgformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/svgformat.dir/svgformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/svgformat.cpp --- src/formats/CMakeFiles/pngformat.dir/all --- --- lib/pngformat.so --- [ 46%] Linking CXX shared module ../../lib/pngformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/pngformat.so CMakeFiles/pngformat.dir/pngformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 46%] Built target pngformat --- src/formats/CMakeFiles/viewmolformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend --- src/formats/CMakeFiles/viewmolformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake Scanning dependencies of target viewmolformat /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build --- src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.o --- [ 46%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dviewmolformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/viewmolformat.dir/viewmolformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/viewmolformat.cpp --- src/formats/CMakeFiles/alchemyformat.dir/all --- --- lib/alchemyformat.so --- [ 46%] Linking CXX shared module ../../lib/alchemyformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 46%] Built target alchemyformat --- src/formats/CMakeFiles/acesformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend --- src/formats/CMakeFiles/acesformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake Scanning dependencies of target acesformat /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build --- src/formats/CMakeFiles/acesformat.dir/acesformat.o --- [ 47%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dacesformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/acesformat.dir/acesformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/acesformat.cpp --- src/formats/CMakeFiles/viewmolformat.dir/all --- --- lib/viewmolformat.so --- [ 47%] Linking CXX shared module ../../lib/viewmolformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 47%] Built target viewmolformat --- src/formats/CMakeFiles/qchemformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend --- src/formats/CMakeFiles/qchemformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake Scanning dependencies of target qchemformat /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build --- src/formats/CMakeFiles/qchemformat.dir/qchemformat.o --- [ 47%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dqchemformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/qchemformat.dir/qchemformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/qchemformat.cpp --- src/formats/CMakeFiles/smilesformat.dir/all --- --- lib/smilesformat.so --- [ 47%] Linking CXX shared module ../../lib/smilesformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 47%] Built target smilesformat --- src/formats/CMakeFiles/titleformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend --- src/formats/CMakeFiles/titleformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake Scanning dependencies of target titleformat /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build --- src/formats/CMakeFiles/titleformat.dir/titleformat.o --- [ 47%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dtitleformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/titleformat.dir/titleformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/titleformat.cpp --- src/formats/CMakeFiles/svgformat.dir/all --- --- lib/svgformat.so --- [ 47%] Linking CXX shared module ../../lib/svgformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/svgformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/svgformat.so CMakeFiles/svgformat.dir/svgformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 47%] Built target svgformat --- src/formats/CMakeFiles/asciiformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend --- src/formats/CMakeFiles/asciiformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake Scanning dependencies of target asciiformat /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build --- src/formats/CMakeFiles/asciiformat.dir/asciiformat.o --- [ 47%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dasciiformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/asciiformat.dir/asciiformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/asciiformat.cpp --- src/formats/CMakeFiles/acesformat.dir/all --- --- lib/acesformat.so --- [ 47%] Linking CXX shared module ../../lib/acesformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/acesformat.so CMakeFiles/acesformat.dir/acesformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 47%] Built target acesformat --- src/formats/CMakeFiles/cccformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend --- src/formats/CMakeFiles/cccformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake Scanning dependencies of target cccformat /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build --- src/formats/CMakeFiles/cccformat.dir/cccformat.o --- [ 47%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER 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-lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 48%] Built target titleformat --- src/formats/CMakeFiles/gulpformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend --- src/formats/CMakeFiles/gulpformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake Scanning dependencies of target gulpformat /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build --- src/formats/CMakeFiles/gulpformat.dir/gulpformat.o --- [ 48%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dgulpformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/gulpformat.dir/gulpformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/gulpformat.cpp --- src/formats/CMakeFiles/asciiformat.dir/all --- --- src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.o --- [ 48%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dasciiformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/depict/asciipainter.cpp --- src/formats/CMakeFiles/qchemformat.dir/all --- --- lib/qchemformat.so --- [ 48%] Linking CXX shared module ../../lib/qchemformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 48%] Built target qchemformat --- src/formats/CMakeFiles/adfformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend --- src/formats/CMakeFiles/adfformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake Scanning dependencies of target adfformat /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build --- src/formats/CMakeFiles/adfformat.dir/adfformat.o --- [ 49%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dadfformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/adfformat.dir/adfformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/adfformat.cpp --- src/formats/CMakeFiles/cccformat.dir/all --- --- lib/cccformat.so --- [ 49%] Linking CXX shared module ../../lib/cccformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/cccformat.so CMakeFiles/cccformat.dir/cccformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 49%] Built target cccformat --- src/formats/CMakeFiles/acrformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend --- src/formats/CMakeFiles/acrformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build 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src/formats/CMakeFiles/inchiformat.dir/depend --- src/formats/CMakeFiles/inchiformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake Scanning dependencies of target inchiformat /usr/bin/make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build --- src/formats/CMakeFiles/inchiformat.dir/inchiformat.o --- [ 49%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dinchiformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchiformat.dir/inchiformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/inchiformat.cpp --- src/formats/CMakeFiles/MCDLformat.dir/all --- --- lib/MCDLformat.so --- [ 49%] Linking CXX shared module ../../lib/MCDLformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MCDLformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 49%] Built target MCDLformat --- src/formats/CMakeFiles/balstformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend --- src/formats/CMakeFiles/balstformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake Scanning dependencies of target balstformat /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build --- src/formats/CMakeFiles/balstformat.dir/balstformat.o --- [ 49%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dbalstformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/balstformat.dir/balstformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/balstformat.cpp --- src/formats/CMakeFiles/gulpformat.dir/all --- --- lib/gulpformat.so --- [ 49%] Linking CXX shared module ../../lib/gulpformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gulpformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 50%] Built target gulpformat --- src/formats/CMakeFiles/outformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend --- src/formats/CMakeFiles/outformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake Scanning dependencies of target outformat /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build --- src/formats/CMakeFiles/outformat.dir/outformat.o --- [ 50%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Doutformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/outformat.dir/outformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/outformat.cpp --- src/formats/CMakeFiles/balstformat.dir/all --- --- lib/balstformat.so --- [ 50%] Linking CXX shared module ../../lib/balstformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/balstformat.so CMakeFiles/balstformat.dir/balstformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 50%] Built target balstformat --- src/formats/CMakeFiles/boxformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend --- src/formats/CMakeFiles/boxformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake Scanning dependencies of target boxformat /usr/bin/make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build --- src/formats/CMakeFiles/boxformat.dir/boxformat.o --- [ 51%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dboxformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/boxformat.dir/boxformat.o -c 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/wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake Scanning dependencies of target cacheformat /usr/bin/make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build --- src/formats/CMakeFiles/cacheformat.dir/cacheformat.o --- [ 51%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dcacheformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/cacheformat.dir/cacheformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/cacheformat.cpp --- src/formats/CMakeFiles/outformat.dir/all --- --- lib/outformat.so --- [ 51%] Linking CXX shared module ../../lib/outformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/outformat.so CMakeFiles/outformat.dir/outformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 52%] Built target outformat --- src/formats/CMakeFiles/gamessukformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend --- src/formats/CMakeFiles/gamessukformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake Scanning dependencies of target gamessukformat /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build --- src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.o --- [ 52%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER 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src/formats/CMakeFiles/carformat.dir/depend --- src/formats/CMakeFiles/carformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake Scanning dependencies of target carformat /usr/bin/make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build --- src/formats/CMakeFiles/carformat.dir/carformat.o --- [ 53%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dcarformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/carformat.dir/carformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/carformat.cpp --- src/formats/CMakeFiles/adfformat.dir/all --- [ 53%] Built target adfformat --- src/formats/CMakeFiles/chem3dformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend --- src/formats/CMakeFiles/chem3dformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build 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src/formats/CMakeFiles/chemtoolformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake Scanning dependencies of target chemtoolformat /usr/bin/make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build --- src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.o --- [ 53%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dchemtoolformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/chemtoolformat.dir/chemtoolformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/chemtoolformat.cpp --- src/formats/CMakeFiles/inchiformat.dir/all --- --- src/formats/CMakeFiles/inchiformat.dir/getinchi.o --- [ 53%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dinchiformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchiformat.dir/getinchi.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/getinchi.cpp --- src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.o --- [ 53%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dinchiformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/inchiformat.dir/__/ops/unique.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/ops/unique.cpp --- src/formats/CMakeFiles/chemtoolformat.dir/all --- --- lib/chemtoolformat.so --- [ 53%] Linking CXX shared module ../../lib/chemtoolformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 53%] Built target chemtoolformat --- src/formats/CMakeFiles/fhformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend --- src/formats/CMakeFiles/fhformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake Scanning dependencies of target fhformat /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build --- src/formats/CMakeFiles/fhformat.dir/fhformat.o --- [ 53%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dfhformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/fhformat.dir/fhformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/fhformat.cpp --- src/formats/CMakeFiles/carformat.dir/all --- --- lib/carformat.so --- [ 53%] Linking CXX shared module ../../lib/carformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/carformat.so CMakeFiles/carformat.dir/carformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm 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src/formats/CMakeFiles/reportformat.dir/reportformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dreportformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/reportformat.dir/reportformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/reportformat.cpp --- src/formats/CMakeFiles/chem3dformat.dir/all --- --- lib/chem3dformat.so --- [ 53%] Linking CXX shared module ../../lib/chem3dformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 53%] Built target chem3dformat --- src/formats/CMakeFiles/yasaraformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend --- src/formats/CMakeFiles/yasaraformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake Scanning dependencies of target yasaraformat /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build --- src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.o --- [ 53%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dyasaraformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/yasaraformat.dir/yasaraformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/yasaraformat.cpp --- src/formats/CMakeFiles/inchiformat.dir/all --- --- lib/inchiformat.so --- [ 53%] Linking CXX shared module ../../lib/inchiformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.o CMakeFiles/inchiformat.dir/getinchi.o CMakeFiles/inchiformat.dir/__/ops/unique.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 54%] Built target inchiformat --- src/formats/CMakeFiles/cifformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend --- src/formats/CMakeFiles/cifformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake Scanning dependencies of target cifformat /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build --- src/formats/CMakeFiles/cifformat.dir/cifformat.o --- [ 54%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dcifformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/cifformat.dir/cifformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/cifformat.cpp --- src/formats/CMakeFiles/reportformat.dir/all --- --- lib/reportformat.so --- [ 54%] Linking CXX shared module ../../lib/reportformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/reportformat.so CMakeFiles/reportformat.dir/reportformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 55%] Built target reportformat --- src/formats/CMakeFiles/crkformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend --- src/formats/CMakeFiles/crkformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake Scanning dependencies of target crkformat /usr/bin/make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build --- src/formats/CMakeFiles/crkformat.dir/crkformat.o --- [ 55%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER 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../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 55%] Built target fhformat --- src/formats/CMakeFiles/pwscfformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend --- src/formats/CMakeFiles/pwscfformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake Scanning dependencies of target pwscfformat /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build --- src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.o --- [ 55%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dpwscfformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/pwscfformat.dir/pwscfformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/pwscfformat.cpp --- src/formats/CMakeFiles/yasaraformat.dir/all --- --- lib/yasaraformat.so --- [ 55%] Linking CXX shared module ../../lib/yasaraformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/yasaraformat.so CMakeFiles/yasaraformat.dir/yasaraformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 55%] Built target yasaraformat --- src/formats/CMakeFiles/pdbformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend --- src/formats/CMakeFiles/pdbformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake Scanning dependencies of target pdbformat /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build --- src/formats/CMakeFiles/pdbformat.dir/pdbformat.o --- [ 55%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dpdbformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/pdbformat.dir/pdbformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/pdbformat.cpp --- src/formats/CMakeFiles/gamessukformat.dir/all --- --- lib/gamessukformat.so --- [ 55%] Linking CXX shared module ../../lib/gamessukformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 55%] Built target gamessukformat --- src/formats/CMakeFiles/cssrformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend --- src/formats/CMakeFiles/cssrformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake Scanning dependencies of target cssrformat /usr/bin/make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build --- src/formats/CMakeFiles/cssrformat.dir/cssrformat.o --- [ 56%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dcssrformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/cssrformat.dir/cssrformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/cssrformat.cpp --- src/formats/CMakeFiles/crkformat.dir/all --- --- lib/crkformat.so --- [ 56%] Linking CXX shared module ../../lib/crkformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/crkformat.so CMakeFiles/crkformat.dir/crkformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 56%] Built target crkformat --- src/formats/CMakeFiles/xsfformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend --- src/formats/CMakeFiles/xsfformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake Scanning dependencies of target xsfformat /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build --- src/formats/CMakeFiles/xsfformat.dir/xsfformat.o --- [ 56%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dxsfformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/xsfformat.dir/xsfformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/xsfformat.cpp --- src/formats/CMakeFiles/pwscfformat.dir/all --- --- lib/pwscfformat.so --- [ 56%] Linking CXX shared module ../../lib/pwscfformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 57%] Built target pwscfformat --- src/formats/CMakeFiles/gromos96format.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend --- src/formats/CMakeFiles/gromos96format.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake Scanning dependencies of target gromos96format /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build --- src/formats/CMakeFiles/gromos96format.dir/gromos96format.o --- [ 57%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dgromos96format_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/gromos96format.dir/gromos96format.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/gromos96format.cpp --- src/formats/CMakeFiles/cssrformat.dir/all --- --- lib/cssrformat.so --- [ 57%] Linking CXX shared module ../../lib/cssrformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 57%] Built target cssrformat --- src/formats/CMakeFiles/dlpolyformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend --- src/formats/CMakeFiles/dlpolyformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake Scanning dependencies of target dlpolyformat /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build --- src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.o --- [ 57%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Ddlpolyformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/dlpolyformat.dir/dlpolyformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/dlpolyformat.cpp --- src/formats/CMakeFiles/xsfformat.dir/all --- --- lib/xsfformat.so --- [ 57%] Linking CXX shared module ../../lib/xsfformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 57%] Built target xsfformat --- src/formats/CMakeFiles/fastsearchformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend --- src/formats/CMakeFiles/fastsearchformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake Scanning dependencies of target fastsearchformat /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build --- src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.o --- [ 58%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dfastsearchformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/fastsearchformat.dir/fastsearchformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/fastsearchformat.cpp --- src/formats/CMakeFiles/gromos96format.dir/all --- --- lib/gromos96format.so --- [ 58%] Linking CXX shared module ../../lib/gromos96format.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 58%] Built target gromos96format --- src/formats/CMakeFiles/featformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend --- src/formats/CMakeFiles/featformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake Scanning dependencies of target featformat /usr/bin/make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build --- src/formats/CMakeFiles/featformat.dir/featformat.o --- [ 59%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dfeatformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/featformat.dir/featformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/featformat.cpp --- src/formats/CMakeFiles/pdbformat.dir/all --- --- lib/pdbformat.so --- [ 59%] Linking CXX shared module ../../lib/pdbformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz 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CMakeFiles/pcmodelformat.dir/pcmodelformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/pcmodelformat.cpp --- src/formats/CMakeFiles/cifformat.dir/all --- [ 61%] Built target cifformat --- src/formats/CMakeFiles/fchkformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend --- src/formats/CMakeFiles/fchkformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake Scanning dependencies of target fchkformat /usr/bin/make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build --- src/formats/CMakeFiles/fingerprintformat.dir/all --- --- lib/fingerprintformat.so --- --- src/formats/CMakeFiles/fchkformat.dir/all --- --- src/formats/CMakeFiles/fchkformat.dir/fchkformat.o --- --- src/formats/CMakeFiles/fingerprintformat.dir/all --- [ 61%] Linking CXX shared module ../../lib/fingerprintformat.so --- src/formats/CMakeFiles/fchkformat.dir/all --- [ 61%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.o --- src/formats/CMakeFiles/fingerprintformat.dir/all --- cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/fchkformat.dir/all --- cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dfchkformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/fchkformat.dir/fchkformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/fchkformat.cpp --- src/formats/CMakeFiles/fingerprintformat.dir/all --- /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 61%] Built target fingerprintformat --- src/formats/CMakeFiles/groformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend --- src/formats/CMakeFiles/groformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake Scanning dependencies of target groformat /usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build --- src/formats/CMakeFiles/groformat.dir/groformat.o --- [ 61%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dgroformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/groformat.dir/groformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/groformat.cpp --- src/formats/CMakeFiles/fastsearchformat.dir/all --- --- lib/fastsearchformat.so --- [ 61%] Linking CXX shared module ../../lib/fastsearchformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fastsearchformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/fastsearchformat.so CMakeFiles/fastsearchformat.dir/fastsearchformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 61%] Built target fastsearchformat --- src/formats/CMakeFiles/gaussformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend --- src/formats/CMakeFiles/gaussformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake Scanning dependencies of target gaussformat /usr/bin/make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build --- src/formats/CMakeFiles/gaussformat.dir/gaussformat.o --- [ 61%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL 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-DNDEBUG -shared -o ../../lib/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 61%] Built target freefracformat --- src/formats/CMakeFiles/lmpdatformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend --- src/formats/CMakeFiles/lmpdatformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake Scanning dependencies of target lmpdatformat /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build --- src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.o --- [ 61%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dlmpdatformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/lmpdatformat.dir/lmpdatformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/lmpdatformat.cpp --- src/formats/CMakeFiles/pcmodelformat.dir/all --- --- lib/pcmodelformat.so --- [ 61%] Linking CXX shared module ../../lib/pcmodelformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 61%] Built target pcmodelformat --- src/formats/CMakeFiles/mmcifformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend --- src/formats/CMakeFiles/mmcifformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build 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-DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/mmcifformat.dir/mmcifformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/mmcifformat.cpp --- src/formats/CMakeFiles/groformat.dir/all --- --- lib/groformat.so --- [ 61%] Linking CXX shared module ../../lib/groformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/groformat.so CMakeFiles/groformat.dir/groformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 62%] Built target groformat --- src/formats/CMakeFiles/zindoformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend --- src/formats/CMakeFiles/fchkformat.dir/all --- --- lib/fchkformat.so --- --- src/formats/CMakeFiles/zindoformat.dir/all --- --- src/formats/CMakeFiles/zindoformat.dir/depend --- --- src/formats/CMakeFiles/fchkformat.dir/all --- [ 62%] Linking CXX shared module ../../lib/fchkformat.so --- src/formats/CMakeFiles/zindoformat.dir/all --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/fchkformat.dir/all --- cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/zindoformat.dir/all --- Scanning dependencies of target zindoformat --- src/formats/CMakeFiles/fchkformat.dir/all --- /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/fchkformat.so CMakeFiles/fchkformat.dir/fchkformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- src/formats/CMakeFiles/zindoformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build --- src/formats/CMakeFiles/zindoformat.dir/zindoformat.o --- [ 62%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dzindoformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/zindoformat.dir/zindoformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/zindoformat.cpp --- src/formats/CMakeFiles/fchkformat.dir/all --- [ 62%] Built target fchkformat --- src/formats/CMakeFiles/mmodformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend --- src/formats/CMakeFiles/mmodformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake Scanning dependencies of target mmodformat /usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build --- src/formats/CMakeFiles/mmodformat.dir/mmodformat.o --- [ 63%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmmodformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/mmodformat.dir/mmodformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/mmodformat.cpp --- src/formats/CMakeFiles/zindoformat.dir/all --- --- lib/zindoformat.so --- [ 63%] Linking CXX shared module ../../lib/zindoformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 64%] Built target zindoformat --- src/formats/CMakeFiles/rsmiformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend --- src/formats/CMakeFiles/rsmiformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake Scanning dependencies of target rsmiformat /usr/bin/make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build --- src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.o --- [ 64%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Drsmiformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/rsmiformat.dir/rsmiformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/rsmiformat.cpp --- src/formats/CMakeFiles/lmpdatformat.dir/all --- --- lib/lmpdatformat.so --- [ 64%] Linking CXX shared module ../../lib/lmpdatformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 65%] Built target lmpdatformat --- src/formats/CMakeFiles/moldenformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend --- src/formats/CMakeFiles/moldenformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake Scanning dependencies of target moldenformat /usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build --- src/formats/CMakeFiles/moldenformat.dir/moldenformat.o --- [ 66%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmoldenformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/moldenformat.dir/moldenformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/moldenformat.cpp --- src/formats/CMakeFiles/mmodformat.dir/all --- --- lib/mmodformat.so --- [ 66%] Linking CXX shared module ../../lib/mmodformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 66%] Built target mmodformat --- src/formats/CMakeFiles/cmlformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend --- src/formats/CMakeFiles/cmlformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake Scanning dependencies of target cmlformat /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build --- src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.o --- [ 66%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dcmlformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/cmlformat.dir/xml/cmlformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/xml/cmlformat.cpp --- src/formats/CMakeFiles/mmcifformat.dir/all --- --- lib/mmcifformat.so --- [ 66%] Linking CXX shared module ../../lib/mmcifformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 66%] Built target mmcifformat --- src/formats/CMakeFiles/rxnformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend --- src/formats/CMakeFiles/rxnformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake Scanning dependencies of target rxnformat /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build --- src/formats/CMakeFiles/rxnformat.dir/rxnformat.o --- [ 66%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Drxnformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/rxnformat.dir/rxnformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/rxnformat.cpp --- src/formats/CMakeFiles/gaussformat.dir/all --- --- lib/gaussformat.so --- [ 66%] Linking CXX shared module ../../lib/gaussformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- src/formats/CMakeFiles/rsmiformat.dir/all --- --- lib/rsmiformat.so --- [ 66%] Linking CXX shared module ../../lib/rsmiformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rsmiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/rsmiformat.so CMakeFiles/rsmiformat.dir/rsmiformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- src/formats/CMakeFiles/gaussformat.dir/all --- [ 66%] Built target gaussformat --- src/formats/CMakeFiles/mpdformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend --- src/formats/CMakeFiles/mpdformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake Scanning dependencies of target mpdformat /usr/bin/make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build --- src/formats/CMakeFiles/mpdformat.dir/mpdformat.o --- [ 67%] 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/usr/bin/make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend --- src/formats/CMakeFiles/mpqcformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake Scanning dependencies of target mpqcformat /usr/bin/make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build --- src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.o --- [ 68%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS 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-lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 68%] Built target moldenformat --- src/formats/CMakeFiles/crystal09format.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend --- src/formats/CMakeFiles/crystal09format.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake Scanning dependencies of target crystal09format /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build --- src/formats/CMakeFiles/crystal09format.dir/crystal09format.o --- [ 68%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dcrystal09format_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/crystal09format.dir/crystal09format.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/crystal09format.cpp --- src/formats/CMakeFiles/mpqcformat.dir/all --- --- lib/mpqcformat.so --- [ 68%] Linking CXX shared module ../../lib/mpqcformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 68%] Built target mpqcformat --- src/formats/CMakeFiles/pqrformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend --- src/formats/CMakeFiles/pqrformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake Scanning dependencies of target pqrformat /usr/bin/make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build --- src/formats/CMakeFiles/pqrformat.dir/pqrformat.o --- [ 68%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dpqrformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/pqrformat.dir/pqrformat.o -c 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/wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/mpdformat.dir/all --- --- lib/mpdformat.so --- --- src/formats/CMakeFiles/msiformat.dir/all --- Scanning dependencies of target msiformat /usr/bin/make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build --- src/formats/CMakeFiles/mpdformat.dir/all --- [ 68%] Linking CXX shared module ../../lib/mpdformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/msiformat.dir/all --- --- src/formats/CMakeFiles/msiformat.dir/msiformat.o --- --- src/formats/CMakeFiles/mpdformat.dir/all --- /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- src/formats/CMakeFiles/msiformat.dir/all --- [ 68%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmsiformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/msiformat.dir/msiformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/msiformat.cpp --- src/formats/CMakeFiles/mpdformat.dir/all --- [ 68%] Built target mpdformat --- src/formats/CMakeFiles/msmsformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend --- src/formats/CMakeFiles/msmsformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake Scanning dependencies of target msmsformat /usr/bin/make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build --- src/formats/CMakeFiles/msmsformat.dir/msmsformat.o --- [ 68%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmsmsformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/msmsformat.dir/msmsformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/msmsformat.cpp --- src/formats/CMakeFiles/crystal09format.dir/all --- --- lib/crystal09format.so --- [ 68%] Linking CXX shared module ../../lib/crystal09format.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 68%] Built target crystal09format --- src/formats/CMakeFiles/pdbqtformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend --- src/formats/CMakeFiles/pdbqtformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake Scanning dependencies of target pdbqtformat /usr/bin/make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build --- src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.o --- [ 68%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dpdbqtformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/pdbqtformat.dir/pdbqtformat.o -c 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/wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake Scanning dependencies of target molproformat /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build --- src/formats/CMakeFiles/molproformat.dir/molproformat.o --- [ 69%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmolproformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/molproformat.dir/molproformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/molproformat.cpp --- src/formats/CMakeFiles/msmsformat.dir/all --- --- lib/msmsformat.so --- [ 69%] Linking CXX shared module ../../lib/msmsformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 69%] Built target msmsformat --- src/formats/CMakeFiles/posformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend --- src/formats/CMakeFiles/posformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake Scanning dependencies of target posformat /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build --- src/formats/CMakeFiles/posformat.dir/posformat.o --- [ 69%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dposformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/posformat.dir/posformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/posformat.cpp --- src/formats/CMakeFiles/pqrformat.dir/all --- --- lib/pqrformat.so --- [ 69%] Linking CXX shared module ../../lib/pqrformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 70%] Built target pqrformat --- src/formats/CMakeFiles/shelxformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend --- src/formats/CMakeFiles/shelxformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake Scanning dependencies of target shelxformat /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build --- src/formats/CMakeFiles/shelxformat.dir/shelxformat.o --- [ 70%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dshelxformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/shelxformat.dir/shelxformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/shelxformat.cpp --- src/formats/CMakeFiles/posformat.dir/all --- --- lib/posformat.so --- [ 70%] Linking CXX shared module ../../lib/posformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/posformat.so CMakeFiles/posformat.dir/posformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 71%] Built target posformat --- src/formats/CMakeFiles/unichemformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend --- src/formats/CMakeFiles/unichemformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake Scanning dependencies of target unichemformat /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build --- src/formats/CMakeFiles/unichemformat.dir/unichemformat.o --- [ 71%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dunichemformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/unichemformat.dir/unichemformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/unichemformat.cpp --- src/formats/CMakeFiles/shelxformat.dir/all --- --- lib/shelxformat.so --- [ 71%] Linking CXX shared module ../../lib/shelxformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 72%] Built target shelxformat --- src/formats/CMakeFiles/xedformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend --- src/formats/CMakeFiles/xedformat.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake Scanning dependencies of target xedformat /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build --- src/formats/CMakeFiles/xedformat.dir/xedformat.o --- [ 73%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dxedformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/xedformat.dir/xedformat.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/xedformat.cpp --- src/formats/CMakeFiles/molproformat.dir/all --- --- lib/molproformat.so --- [ 73%] Linking CXX shared module ../../lib/molproformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/molproformat.so CMakeFiles/molproformat.dir/molproformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 73%] Built target molproformat --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend --- src/formats/CMakeFiles/chemdrawcdx.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake Scanning dependencies of target chemdrawcdx /usr/bin/make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build --- src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o --- [ 74%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dchemdrawcdx_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/chemdrawcdx.cpp --- src/formats/CMakeFiles/cmlformat.dir/all --- --- src/formats/CMakeFiles/cmlformat.dir/xml/xml.o --- [ 74%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.o cd /wrkdirs/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dcmlformat_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/science/openbabel/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/cmlformat.dir/xml/xml.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/xml/xml.cpp --- src/formats/CMakeFiles/unichemformat.dir/all --- --- lib/unichemformat.so --- [ 74%] Linking CXX shared module ../../lib/unichemformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 75%] Built target unichemformat --- tools/CMakeFiles/obgrep.dir/all --- /usr/bin/make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/depend --- tools/CMakeFiles/obgrep.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obgrep.dir/DependInfo.cmake Scanning dependencies of target obgrep /usr/bin/make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/build --- tools/CMakeFiles/obgrep.dir/obgrep.o --- [ 75%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obgrep.dir/obgrep.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obgrep.cpp --- src/formats/CMakeFiles/xedformat.dir/all --- --- lib/xedformat.so --- [ 75%] Linking CXX shared module ../../lib/xedformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/xedformat.so CMakeFiles/xedformat.dir/xedformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 75%] Built target xedformat --- tools/CMakeFiles/obspectrophore.dir/all --- /usr/bin/make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/depend --- tools/CMakeFiles/obspectrophore.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake Scanning dependencies of target obspectrophore /usr/bin/make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/build --- tools/CMakeFiles/obspectrophore.dir/obspectrophore.o --- [ 76%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obspectrophore.dir/obspectrophore.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obspectrophore.cpp --- tools/CMakeFiles/obgrep.dir/all --- --- bin/obgrep --- [ 76%] Linking CXX executable ../bin/obgrep cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obgrep.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obgrep.dir/obgrep.o -o ../bin/obgrep ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 77%] Built target obgrep --- tools/CMakeFiles/obrotate.dir/all --- /usr/bin/make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/depend --- tools/CMakeFiles/obrotate.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obrotate.dir/DependInfo.cmake Scanning dependencies of target obrotate /usr/bin/make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/build --- tools/CMakeFiles/obrotate.dir/obrotate.o --- [ 77%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obrotate.dir/obrotate.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obrotate.cpp --- src/formats/CMakeFiles/pdbqtformat.dir/all --- --- lib/pdbqtformat.so --- [ 77%] Linking CXX shared module ../../lib/pdbqtformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pdbqtformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../../lib/pdbqtformat.so CMakeFiles/pdbqtformat.dir/pdbqtformat.o -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 77%] Built target pdbqtformat --- tools/CMakeFiles/obrotamer.dir/all --- /usr/bin/make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/depend --- tools/CMakeFiles/obrotamer.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake Scanning dependencies of target obrotamer /usr/bin/make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/build --- tools/CMakeFiles/obrotamer.dir/obrotamer.o --- [ 77%] Building CXX object tools/CMakeFiles/obrotamer.dir/obrotamer.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obrotamer.dir/obrotamer.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obrotamer.cpp --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- --- lib/chemdrawcdx.so --- --- src/formats/CMakeFiles/cmlformat.dir/all --- --- lib/cmlformat.so --- --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- [ 77%] Linking CXX shared module ../../lib/chemdrawcdx.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chemdrawcdx.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/cmlformat.dir/all --- [ 77%] Linking CXX shared module ../../lib/cmlformat.so cd /wrkdirs/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmlformat.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o 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/wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/babel.dir/DependInfo.cmake --- src/formats/CMakeFiles/cmlformat.dir/all --- [ 77%] Built target cmlformat --- tools/CMakeFiles/obrms.dir/all --- /usr/bin/make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/depend --- tools/CMakeFiles/obrms.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obrms.dir/DependInfo.cmake Scanning dependencies of target obrms /usr/bin/make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/build --- tools/CMakeFiles/obrms.dir/obrms.o --- [ 77%] Building CXX object tools/CMakeFiles/obrms.dir/obrms.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obrms.dir/obrms.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obrms.cpp --- tools/CMakeFiles/babel.dir/all --- Scanning dependencies of target babel /usr/bin/make -f tools/CMakeFiles/babel.dir/build.make tools/CMakeFiles/babel.dir/build --- tools/CMakeFiles/babel.dir/babel.o --- [ 78%] Building CXX object tools/CMakeFiles/babel.dir/babel.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/babel.dir/babel.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/babel.cpp --- tools/CMakeFiles/obspectrophore.dir/all --- --- bin/obspectrophore --- [ 78%] Linking CXX executable ../bin/obspectrophore cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obspectrophore.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obspectrophore.dir/obspectrophore.o -o ../bin/obspectrophore ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 78%] Built target obspectrophore --- tools/CMakeFiles/obconformer.dir/all --- /usr/bin/make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend --- tools/CMakeFiles/obconformer.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obconformer.dir/DependInfo.cmake Scanning dependencies of target obconformer /usr/bin/make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/build --- tools/CMakeFiles/obconformer.dir/obconformer.o --- [ 78%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obconformer.dir/obconformer.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obconformer.cpp --- tools/CMakeFiles/obrotate.dir/all --- --- bin/obrotate --- [ 78%] Linking CXX executable ../bin/obrotate cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obrotate.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obrotate.dir/obrotate.o -o ../bin/obrotate ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 78%] Built target obrotate --- tools/CMakeFiles/obchiral.dir/all --- /usr/bin/make -f tools/CMakeFiles/obchiral.dir/build.make tools/CMakeFiles/obchiral.dir/depend --- tools/CMakeFiles/obchiral.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obchiral.dir/DependInfo.cmake Scanning dependencies of target obchiral /usr/bin/make -f tools/CMakeFiles/obchiral.dir/build.make tools/CMakeFiles/obchiral.dir/build --- tools/CMakeFiles/obchiral.dir/obchiral.o --- [ 78%] Building CXX object tools/CMakeFiles/obchiral.dir/obchiral.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obchiral.dir/obchiral.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obchiral.cpp --- tools/CMakeFiles/obrotamer.dir/all --- --- bin/obrotamer --- [ 78%] Linking CXX executable ../bin/obrotamer cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obrotamer.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obrotamer.dir/obrotamer.o -o ../bin/obrotamer ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 78%] Built target obrotamer --- tools/CMakeFiles/obenergy.dir/all --- /usr/bin/make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend --- tools/CMakeFiles/obenergy.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obenergy.dir/DependInfo.cmake Scanning dependencies of target obenergy /usr/bin/make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/build --- tools/CMakeFiles/obenergy.dir/obenergy.o --- [ 78%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obenergy.dir/obenergy.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obenergy.cpp --- tools/CMakeFiles/obrms.dir/all --- --- bin/obrms --- [ 78%] Linking CXX executable ../bin/obrms cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obrms.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obrms.dir/obrms.o -o ../bin/obrms ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 79%] Built target obrms --- tools/CMakeFiles/obfit.dir/all --- /usr/bin/make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/depend --- tools/CMakeFiles/obfit.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obfit.dir/DependInfo.cmake Scanning dependencies of target obfit /usr/bin/make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/build --- tools/CMakeFiles/obfit.dir/obfit.o --- [ 79%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obfit.dir/obfit.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obfit.cpp --- tools/CMakeFiles/babel.dir/all --- --- bin/babel --- [ 79%] Linking CXX executable ../bin/babel cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/babel.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/babel.dir/babel.o -o ../bin/babel ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 79%] Built target babel --- tools/CMakeFiles/obabel.dir/all --- /usr/bin/make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/depend --- tools/CMakeFiles/obabel.dir/depend --- --- tools/CMakeFiles/obconformer.dir/all --- --- bin/obconformer --- --- tools/CMakeFiles/obabel.dir/all --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obabel.dir/DependInfo.cmake --- tools/CMakeFiles/obconformer.dir/all --- [ 80%] Linking CXX executable ../bin/obconformer cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obconformer.dir/link.txt --verbose=1 --- tools/CMakeFiles/obabel.dir/all --- Scanning dependencies of target obabel /usr/bin/make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/build --- tools/CMakeFiles/obconformer.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obconformer.dir/obconformer.o -o ../bin/obconformer ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- tools/CMakeFiles/obabel.dir/all --- --- tools/CMakeFiles/obabel.dir/obabel.o --- [ 80%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obabel.dir/obabel.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obabel.cpp --- tools/CMakeFiles/obconformer.dir/all --- [ 80%] Built target obconformer --- tools/CMakeFiles/obminimize.dir/all --- /usr/bin/make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/depend --- tools/CMakeFiles/obminimize.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obminimize.dir/DependInfo.cmake Scanning dependencies of target obminimize /usr/bin/make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/build --- tools/CMakeFiles/obminimize.dir/obminimize.o --- [ 80%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obminimize.dir/obminimize.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obminimize.cpp --- tools/CMakeFiles/obchiral.dir/all --- --- bin/obchiral --- [ 80%] Linking CXX executable ../bin/obchiral cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obchiral.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obchiral.dir/obchiral.o -o ../bin/obchiral ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 80%] Built target obchiral --- tools/CMakeFiles/obprop.dir/all --- /usr/bin/make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/depend --- tools/CMakeFiles/obprop.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obprop.dir/DependInfo.cmake Scanning dependencies of target obprop /usr/bin/make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/build --- tools/CMakeFiles/obprop.dir/obprop.o --- [ 80%] Building CXX object tools/CMakeFiles/obprop.dir/obprop.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obprop.dir/obprop.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obprop.cpp --- tools/CMakeFiles/obenergy.dir/all --- --- bin/obenergy --- [ 80%] Linking CXX executable ../bin/obenergy cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obenergy.dir/link.txt --verbose=1 --- tools/CMakeFiles/obabel.dir/all --- --- bin/obabel --- --- tools/CMakeFiles/obenergy.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obenergy.dir/obenergy.o -o ../bin/obenergy ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- tools/CMakeFiles/obabel.dir/all --- [ 81%] Linking CXX executable ../bin/obabel cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obabel.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obabel.dir/obabel.o -o ../bin/obabel ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- tools/CMakeFiles/obenergy.dir/all --- [ 81%] Built target obenergy --- tools/CMakeFiles/obgen.dir/all --- /usr/bin/make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/depend --- tools/CMakeFiles/obgen.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obgen.dir/DependInfo.cmake --- tools/CMakeFiles/obabel.dir/all --- [ 81%] Built target obabel --- tools/CMakeFiles/obprobe.dir/all --- /usr/bin/make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/depend --- tools/CMakeFiles/obgen.dir/all --- Scanning dependencies of target obgen --- tools/CMakeFiles/obprobe.dir/all --- --- tools/CMakeFiles/obprobe.dir/depend --- --- tools/CMakeFiles/obgen.dir/all --- /usr/bin/make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/build --- tools/CMakeFiles/obprobe.dir/all --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obprobe.dir/DependInfo.cmake --- tools/CMakeFiles/obgen.dir/all --- --- tools/CMakeFiles/obgen.dir/obgen.o --- [ 81%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.o --- tools/CMakeFiles/obprobe.dir/all --- Scanning dependencies of target obprobe --- tools/CMakeFiles/obgen.dir/all --- cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obgen.dir/obgen.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obgen.cpp --- tools/CMakeFiles/obprobe.dir/all --- /usr/bin/make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/build --- tools/CMakeFiles/obprobe.dir/obprobe.o --- [ 81%] Building CXX object tools/CMakeFiles/obprobe.dir/obprobe.o cd /wrkdirs/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/obprobe.dir/obprobe.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/tools/obprobe.cpp --- tools/CMakeFiles/obfit.dir/all --- --- bin/obfit --- [ 81%] Linking CXX executable ../bin/obfit cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obfit.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obfit.dir/obfit.o -o ../bin/obfit ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 82%] Built target obfit --- test/CMakeFiles/roundtrip.dir/all --- /usr/bin/make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/depend --- test/CMakeFiles/roundtrip.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/roundtrip.dir/DependInfo.cmake Scanning dependencies of target roundtrip /usr/bin/make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/build --- test/CMakeFiles/roundtrip.dir/roundtrip.o --- --- tools/CMakeFiles/obminimize.dir/all --- --- bin/obminimize --- --- test/CMakeFiles/roundtrip.dir/all --- [ 82%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/roundtrip.dir/roundtrip.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/roundtrip.cpp --- tools/CMakeFiles/obminimize.dir/all --- [ 82%] Linking CXX executable ../bin/obminimize cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obminimize.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obminimize.dir/obminimize.o -o ../bin/obminimize ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 82%] Built target obminimize --- test/CMakeFiles/test_aromatest.dir/all --- /usr/bin/make -f test/CMakeFiles/test_aromatest.dir/build.make test/CMakeFiles/test_aromatest.dir/depend --- test/CMakeFiles/test_aromatest.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_aromatest.dir/DependInfo.cmake Scanning dependencies of target test_aromatest /usr/bin/make -f test/CMakeFiles/test_aromatest.dir/build.make test/CMakeFiles/test_aromatest.dir/build --- test/CMakeFiles/test_aromatest.dir/aromatest.o --- [ 83%] Building CXX object test/CMakeFiles/test_aromatest.dir/aromatest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_aromatest.dir/aromatest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/aromatest.cpp --- tools/CMakeFiles/obprop.dir/all --- --- bin/obprop --- [ 83%] Linking CXX executable ../bin/obprop cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obprop.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obprop.dir/obprop.o -o ../bin/obprop ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 83%] Built target obprop --- test/CMakeFiles/test_uniqueid.dir/all --- /usr/bin/make -f test/CMakeFiles/test_uniqueid.dir/build.make test/CMakeFiles/test_uniqueid.dir/depend --- test/CMakeFiles/test_uniqueid.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_uniqueid.dir/DependInfo.cmake Scanning dependencies of target test_uniqueid /usr/bin/make -f test/CMakeFiles/test_uniqueid.dir/build.make test/CMakeFiles/test_uniqueid.dir/build --- test/CMakeFiles/test_uniqueid.dir/uniqueidtest.o --- [ 83%] Building CXX object test/CMakeFiles/test_uniqueid.dir/uniqueidtest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_uniqueid.dir/uniqueidtest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/uniqueidtest.cpp --- tools/CMakeFiles/obprobe.dir/all --- --- bin/obprobe --- [ 83%] Linking CXX executable ../bin/obprobe cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obprobe.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obprobe.dir/obprobe.o -o ../bin/obprobe ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- test/CMakeFiles/test_aromatest.dir/all --- --- bin/test_aromatest --- [ 83%] Linking CXX executable ../bin/test_aromatest cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_aromatest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_aromatest.dir/aromatest.o -o ../bin/test_aromatest ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- tools/CMakeFiles/obprobe.dir/all --- [ 84%] Built target obprobe --- test/CMakeFiles/test_smilesmatch.dir/all --- /usr/bin/make -f test/CMakeFiles/test_smilesmatch.dir/build.make test/CMakeFiles/test_smilesmatch.dir/depend --- test/CMakeFiles/test_smilesmatch.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_smilesmatch.dir/DependInfo.cmake Scanning dependencies of target test_smilesmatch /usr/bin/make -f test/CMakeFiles/test_smilesmatch.dir/build.make test/CMakeFiles/test_smilesmatch.dir/build --- test/CMakeFiles/test_smilesmatch.dir/smilesmatch.o --- [ 85%] Building CXX object test/CMakeFiles/test_smilesmatch.dir/smilesmatch.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_smilesmatch.dir/smilesmatch.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/smilesmatch.cpp --- test/CMakeFiles/test_aromatest.dir/all --- [ 85%] Built target test_aromatest --- test/CMakeFiles/test_stereoperception.dir/all --- /usr/bin/make -f test/CMakeFiles/test_stereoperception.dir/build.make test/CMakeFiles/test_stereoperception.dir/depend --- test/CMakeFiles/test_stereoperception.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_stereoperception.dir/DependInfo.cmake Scanning dependencies of target test_stereoperception /usr/bin/make -f test/CMakeFiles/test_stereoperception.dir/build.make test/CMakeFiles/test_stereoperception.dir/build --- test/CMakeFiles/test_stereoperception.dir/stereoperceptiontest.o --- [ 85%] Building CXX object test/CMakeFiles/test_stereoperception.dir/stereoperceptiontest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_stereoperception.dir/stereoperceptiontest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/stereoperceptiontest.cpp --- test/CMakeFiles/roundtrip.dir/all --- --- bin/roundtrip --- [ 85%] Linking CXX executable ../bin/roundtrip cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/roundtrip.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/roundtrip.dir/roundtrip.o -o ../bin/roundtrip ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 85%] Built target roundtrip --- test/CMakeFiles/test_canonstable.dir/all --- /usr/bin/make -f test/CMakeFiles/test_canonstable.dir/build.make test/CMakeFiles/test_canonstable.dir/depend --- test/CMakeFiles/test_canonstable.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_canonstable.dir/DependInfo.cmake Scanning dependencies of target test_canonstable /usr/bin/make -f test/CMakeFiles/test_canonstable.dir/build.make test/CMakeFiles/test_canonstable.dir/build --- test/CMakeFiles/test_canonstable.dir/canonstabletest.o --- [ 86%] Building CXX object test/CMakeFiles/test_canonstable.dir/canonstabletest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_canonstable.dir/canonstabletest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/canonstabletest.cpp --- tools/CMakeFiles/obgen.dir/all --- --- bin/obgen --- [ 86%] Linking CXX executable ../bin/obgen cd /wrkdirs/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obgen.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/obgen.dir/obgen.o -o ../bin/obgen ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 86%] Built target obgen --- test/CMakeFiles/test_phmodel.dir/all --- /usr/bin/make -f test/CMakeFiles/test_phmodel.dir/build.make test/CMakeFiles/test_phmodel.dir/depend --- test/CMakeFiles/test_phmodel.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_phmodel.dir/DependInfo.cmake Scanning dependencies of target test_phmodel /usr/bin/make -f test/CMakeFiles/test_phmodel.dir/build.make test/CMakeFiles/test_phmodel.dir/build --- test/CMakeFiles/test_phmodel.dir/phmodel.o --- [ 86%] Building CXX object test/CMakeFiles/test_phmodel.dir/phmodel.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_phmodel.dir/phmodel.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/phmodel.cpp --- test/CMakeFiles/test_uniqueid.dir/all --- --- bin/test_uniqueid --- [ 86%] Linking CXX executable ../bin/test_uniqueid cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_uniqueid.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_uniqueid.dir/uniqueidtest.o -o ../bin/test_uniqueid ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 86%] Built target test_uniqueid --- test/CMakeFiles/test_unitcell.dir/all --- /usr/bin/make -f test/CMakeFiles/test_unitcell.dir/build.make test/CMakeFiles/test_unitcell.dir/depend --- test/CMakeFiles/test_unitcell.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_unitcell.dir/DependInfo.cmake Scanning dependencies of target test_unitcell /usr/bin/make -f test/CMakeFiles/test_unitcell.dir/build.make test/CMakeFiles/test_unitcell.dir/build --- test/CMakeFiles/test_unitcell.dir/unitcell.o --- [ 86%] Building CXX object test/CMakeFiles/test_unitcell.dir/unitcell.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_unitcell.dir/unitcell.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/unitcell.cpp --- test/CMakeFiles/test_smilesmatch.dir/all --- --- bin/test_smilesmatch --- [ 86%] Linking CXX executable ../bin/test_smilesmatch cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_smilesmatch.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_smilesmatch.dir/smilesmatch.o -o ../bin/test_smilesmatch ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 86%] Built target test_smilesmatch --- test/CMakeFiles/test_tetraplanar.dir/all --- /usr/bin/make -f test/CMakeFiles/test_tetraplanar.dir/build.make test/CMakeFiles/test_tetraplanar.dir/depend --- test/CMakeFiles/test_tetraplanar.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_tetraplanar.dir/DependInfo.cmake Scanning dependencies of target test_tetraplanar /usr/bin/make -f test/CMakeFiles/test_tetraplanar.dir/build.make test/CMakeFiles/test_tetraplanar.dir/build --- test/CMakeFiles/test_tetraplanar.dir/tetraplanartest.o --- [ 86%] Building CXX object test/CMakeFiles/test_tetraplanar.dir/tetraplanartest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_tetraplanar.dir/tetraplanartest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/tetraplanartest.cpp --- test/CMakeFiles/test_canonstable.dir/all --- --- bin/test_canonstable --- [ 86%] Linking CXX executable ../bin/test_canonstable cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_canonstable.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_canonstable.dir/canonstabletest.o -o ../bin/test_canonstable ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 86%] Built target test_canonstable --- test/CMakeFiles/test_atom.dir/all --- /usr/bin/make -f test/CMakeFiles/test_atom.dir/build.make test/CMakeFiles/test_atom.dir/depend --- test/CMakeFiles/test_atom.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_atom.dir/DependInfo.cmake Scanning dependencies of target test_atom /usr/bin/make -f test/CMakeFiles/test_atom.dir/build.make test/CMakeFiles/test_atom.dir/build --- test/CMakeFiles/test_atom.dir/atom.o --- [ 86%] Building CXX object test/CMakeFiles/test_atom.dir/atom.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_atom.dir/atom.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/atom.cpp --- test/CMakeFiles/test_phmodel.dir/all --- --- bin/test_phmodel --- [ 86%] Linking CXX executable ../bin/test_phmodel cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_phmodel.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_phmodel.dir/phmodel.o -o ../bin/test_phmodel ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 86%] Built target test_phmodel --- test/CMakeFiles/test_smartsparse.dir/all --- /usr/bin/make -f test/CMakeFiles/test_smartsparse.dir/build.make test/CMakeFiles/test_smartsparse.dir/depend --- test/CMakeFiles/test_smartsparse.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_smartsparse.dir/DependInfo.cmake Scanning dependencies of target test_smartsparse /usr/bin/make -f test/CMakeFiles/test_smartsparse.dir/build.make test/CMakeFiles/test_smartsparse.dir/build --- test/CMakeFiles/test_smartsparse.dir/smartsparse.o --- [ 87%] Building CXX object test/CMakeFiles/test_smartsparse.dir/smartsparse.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_smartsparse.dir/smartsparse.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/smartsparse.cpp --- test/CMakeFiles/test_unitcell.dir/all --- --- bin/test_unitcell --- --- test/CMakeFiles/test_stereoperception.dir/all --- --- bin/test_stereoperception --- --- test/CMakeFiles/test_unitcell.dir/all --- [ 88%] Linking CXX executable ../bin/test_unitcell --- test/CMakeFiles/test_stereoperception.dir/all --- [ 88%] Linking CXX executable ../bin/test_stereoperception --- test/CMakeFiles/test_unitcell.dir/all --- cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_unitcell.dir/link.txt --verbose=1 --- test/CMakeFiles/test_stereoperception.dir/all --- cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_stereoperception.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_stereoperception.dir/stereoperceptiontest.o -o ../bin/test_stereoperception ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- test/CMakeFiles/test_unitcell.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_unitcell.dir/unitcell.o -o ../bin/test_unitcell ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 88%] Built target test_unitcell --- test/CMakeFiles/test_stereoperception.dir/all --- [ 88%] Built target test_stereoperception --- test/CMakeFiles/test_math.dir/all --- --- test/CMakeFiles/test_tetranonplanar.dir/all --- --- test/CMakeFiles/test_math.dir/all --- /usr/bin/make -f test/CMakeFiles/test_math.dir/build.make test/CMakeFiles/test_math.dir/depend --- test/CMakeFiles/test_tetranonplanar.dir/all --- /usr/bin/make -f test/CMakeFiles/test_tetranonplanar.dir/build.make test/CMakeFiles/test_tetranonplanar.dir/depend --- test/CMakeFiles/test_tetranonplanar.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_tetranonplanar.dir/DependInfo.cmake --- test/CMakeFiles/test_math.dir/all --- --- test/CMakeFiles/test_math.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_math.dir/DependInfo.cmake --- test/CMakeFiles/test_tetranonplanar.dir/all --- Scanning dependencies of target test_tetranonplanar --- test/CMakeFiles/test_math.dir/all --- Scanning dependencies of target test_math --- test/CMakeFiles/test_tetranonplanar.dir/all --- /usr/bin/make -f test/CMakeFiles/test_tetranonplanar.dir/build.make test/CMakeFiles/test_tetranonplanar.dir/build --- test/CMakeFiles/test_math.dir/all --- /usr/bin/make -f test/CMakeFiles/test_math.dir/build.make test/CMakeFiles/test_math.dir/build --- test/CMakeFiles/test_math.dir/math.o --- --- test/CMakeFiles/test_tetranonplanar.dir/all --- --- test/CMakeFiles/test_tetranonplanar.dir/tetranonplanartest.o --- --- test/CMakeFiles/test_math.dir/all --- [ 88%] Building CXX object test/CMakeFiles/test_math.dir/math.o --- test/CMakeFiles/test_tetranonplanar.dir/all --- [ 89%] Building CXX object test/CMakeFiles/test_tetranonplanar.dir/tetranonplanartest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_tetranonplanar.dir/tetranonplanartest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/tetranonplanartest.cpp --- test/CMakeFiles/test_math.dir/all --- cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_math.dir/math.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/math.cpp --- test/CMakeFiles/test_atom.dir/all --- --- bin/test_atom --- [ 89%] Linking CXX executable ../bin/test_atom cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_atom.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_atom.dir/atom.o -o ../bin/test_atom ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 89%] Built target test_atom --- test/CMakeFiles/test_builder.dir/all --- /usr/bin/make -f test/CMakeFiles/test_builder.dir/build.make test/CMakeFiles/test_builder.dir/depend --- test/CMakeFiles/test_builder.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_builder.dir/DependInfo.cmake Scanning dependencies of target test_builder /usr/bin/make -f test/CMakeFiles/test_builder.dir/build.make test/CMakeFiles/test_builder.dir/build --- test/CMakeFiles/test_builder.dir/buildertest.o --- [ 89%] Building CXX object test/CMakeFiles/test_builder.dir/buildertest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_builder.dir/buildertest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/buildertest.cpp --- test/CMakeFiles/test_tetraplanar.dir/all --- --- bin/test_tetraplanar --- [ 89%] Linking CXX executable ../bin/test_tetraplanar cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_tetraplanar.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_tetraplanar.dir/tetraplanartest.o -o ../bin/test_tetraplanar ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 89%] Built target test_tetraplanar --- test/CMakeFiles/test_squareplanar.dir/all --- /usr/bin/make -f test/CMakeFiles/test_squareplanar.dir/build.make test/CMakeFiles/test_squareplanar.dir/depend --- test/CMakeFiles/test_squareplanar.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_squareplanar.dir/DependInfo.cmake Scanning dependencies of target test_squareplanar /usr/bin/make -f test/CMakeFiles/test_squareplanar.dir/build.make test/CMakeFiles/test_squareplanar.dir/build --- test/CMakeFiles/test_squareplanar.dir/squareplanartest.o --- [ 89%] Building CXX object test/CMakeFiles/test_squareplanar.dir/squareplanartest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_squareplanar.dir/squareplanartest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/squareplanartest.cpp --- test/CMakeFiles/test_smartsparse.dir/all --- --- bin/test_smartsparse --- [ 89%] Linking CXX executable ../bin/test_smartsparse cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_smartsparse.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_smartsparse.dir/smartsparse.o -o ../bin/test_smartsparse ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 89%] Built target test_smartsparse --- test/CMakeFiles/test_automorphism.dir/all --- /usr/bin/make -f test/CMakeFiles/test_automorphism.dir/build.make test/CMakeFiles/test_automorphism.dir/depend --- test/CMakeFiles/test_automorphism.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_automorphism.dir/DependInfo.cmake Scanning dependencies of target test_automorphism /usr/bin/make -f test/CMakeFiles/test_automorphism.dir/build.make test/CMakeFiles/test_automorphism.dir/build --- test/CMakeFiles/test_automorphism.dir/automorphismtest.o --- [ 89%] Building CXX object test/CMakeFiles/test_automorphism.dir/automorphismtest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_automorphism.dir/automorphismtest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/automorphismtest.cpp --- test/CMakeFiles/test_math.dir/all --- --- bin/test_math --- [ 90%] Linking CXX executable ../bin/test_math cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_math.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_math.dir/math.o -o ../bin/test_math ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 90%] Built target test_math --- test/CMakeFiles/test_tetrahedral.dir/all --- /usr/bin/make -f test/CMakeFiles/test_tetrahedral.dir/build.make test/CMakeFiles/test_tetrahedral.dir/depend --- test/CMakeFiles/test_tetrahedral.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_tetrahedral.dir/DependInfo.cmake Scanning dependencies of target test_tetrahedral /usr/bin/make -f test/CMakeFiles/test_tetrahedral.dir/build.make test/CMakeFiles/test_tetrahedral.dir/build --- test/CMakeFiles/test_tetrahedral.dir/tetrahedraltest.o --- [ 90%] Building CXX object test/CMakeFiles/test_tetrahedral.dir/tetrahedraltest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_tetrahedral.dir/tetrahedraltest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/tetrahedraltest.cpp --- test/CMakeFiles/test_tetranonplanar.dir/all --- --- bin/test_tetranonplanar --- [ 90%] Linking CXX executable ../bin/test_tetranonplanar cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_tetranonplanar.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_tetranonplanar.dir/tetranonplanartest.o -o ../bin/test_tetranonplanar ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 90%] Built target test_tetranonplanar --- test/CMakeFiles/test_shuffle.dir/all --- /usr/bin/make -f test/CMakeFiles/test_shuffle.dir/build.make test/CMakeFiles/test_shuffle.dir/depend --- test/CMakeFiles/test_shuffle.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_shuffle.dir/DependInfo.cmake Scanning dependencies of target test_shuffle /usr/bin/make -f test/CMakeFiles/test_shuffle.dir/build.make test/CMakeFiles/test_shuffle.dir/build --- test/CMakeFiles/test_shuffle.dir/shuffletest.o --- [ 90%] Building CXX object test/CMakeFiles/test_shuffle.dir/shuffletest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_shuffle.dir/shuffletest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/shuffletest.cpp --- test/CMakeFiles/test_builder.dir/all --- --- bin/test_builder --- [ 90%] Linking CXX executable ../bin/test_builder cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_builder.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_builder.dir/buildertest.o -o ../bin/test_builder ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 90%] Built target test_builder --- test/CMakeFiles/test_canonconsistent.dir/all --- /usr/bin/make -f test/CMakeFiles/test_canonconsistent.dir/build.make test/CMakeFiles/test_canonconsistent.dir/depend --- test/CMakeFiles/test_canonconsistent.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_canonconsistent.dir/DependInfo.cmake Scanning dependencies of target test_canonconsistent /usr/bin/make -f test/CMakeFiles/test_canonconsistent.dir/build.make test/CMakeFiles/test_canonconsistent.dir/build --- test/CMakeFiles/test_canonconsistent.dir/canonconsistenttest.o --- [ 90%] Building CXX object test/CMakeFiles/test_canonconsistent.dir/canonconsistenttest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_canonconsistent.dir/canonconsistenttest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/canonconsistenttest.cpp --- test/CMakeFiles/test_automorphism.dir/all --- --- bin/test_automorphism --- [ 90%] Linking CXX executable ../bin/test_automorphism cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_automorphism.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_automorphism.dir/automorphismtest.o -o ../bin/test_automorphism ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 90%] Built target test_automorphism --- test/CMakeFiles/test_format.dir/all --- /usr/bin/make -f test/CMakeFiles/test_format.dir/build.make test/CMakeFiles/test_format.dir/depend --- test/CMakeFiles/test_format.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_format.dir/DependInfo.cmake Scanning dependencies of target test_format /usr/bin/make -f test/CMakeFiles/test_format.dir/build.make test/CMakeFiles/test_format.dir/build --- test/CMakeFiles/test_format.dir/format.o --- [ 90%] Building CXX object test/CMakeFiles/test_format.dir/format.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_format.dir/format.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/format.cpp --- test/CMakeFiles/test_squareplanar.dir/all --- --- bin/test_squareplanar --- [ 90%] Linking CXX executable ../bin/test_squareplanar cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_squareplanar.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_squareplanar.dir/squareplanartest.o -o ../bin/test_squareplanar ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 90%] Built target test_squareplanar --- test/CMakeFiles/test_lssr.dir/all --- /usr/bin/make -f test/CMakeFiles/test_lssr.dir/build.make test/CMakeFiles/test_lssr.dir/depend --- test/CMakeFiles/test_lssr.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_lssr.dir/DependInfo.cmake Scanning dependencies of target test_lssr /usr/bin/make -f test/CMakeFiles/test_lssr.dir/build.make test/CMakeFiles/test_lssr.dir/build --- test/CMakeFiles/test_lssr.dir/lssrtest.o --- [ 90%] Building CXX object test/CMakeFiles/test_lssr.dir/lssrtest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_lssr.dir/lssrtest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/lssrtest.cpp --- test/CMakeFiles/test_tetrahedral.dir/all --- --- bin/test_tetrahedral --- [ 90%] Linking CXX executable ../bin/test_tetrahedral cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_tetrahedral.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_tetrahedral.dir/tetrahedraltest.o -o ../bin/test_tetrahedral ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 90%] Built target test_tetrahedral --- test/CMakeFiles/test_stereo.dir/all --- /usr/bin/make -f test/CMakeFiles/test_stereo.dir/build.make test/CMakeFiles/test_stereo.dir/depend --- test/CMakeFiles/test_stereo.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_stereo.dir/DependInfo.cmake Scanning dependencies of target test_stereo /usr/bin/make -f test/CMakeFiles/test_stereo.dir/build.make test/CMakeFiles/test_stereo.dir/build --- test/CMakeFiles/test_canonconsistent.dir/all --- --- bin/test_canonconsistent --- --- test/CMakeFiles/test_stereo.dir/all --- --- test/CMakeFiles/test_stereo.dir/stereotest.o --- --- test/CMakeFiles/test_canonconsistent.dir/all --- [ 90%] Linking CXX executable ../bin/test_canonconsistent --- test/CMakeFiles/test_stereo.dir/all --- [ 91%] Building CXX object test/CMakeFiles/test_stereo.dir/stereotest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_stereo.dir/stereotest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/stereotest.cpp --- test/CMakeFiles/test_canonconsistent.dir/all --- cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_canonconsistent.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_canonconsistent.dir/canonconsistenttest.o -o ../bin/test_canonconsistent ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 91%] Built target test_canonconsistent --- test/CMakeFiles/test_inchiwrite.dir/all --- /usr/bin/make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/depend --- test/CMakeFiles/test_inchiwrite.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake Scanning dependencies of target test_inchiwrite /usr/bin/make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/build --- test/CMakeFiles/test_inchiwrite.dir/inchiwrite.o --- [ 91%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_inchiwrite.dir/inchiwrite.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/inchiwrite.cpp --- test/CMakeFiles/test_format.dir/all --- --- bin/test_format --- [ 92%] Linking CXX executable ../bin/test_format cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_format.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_format.dir/format.o -o ../bin/test_format ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 92%] Built target test_format --- test/CMakeFiles/test_invalidsmarts.dir/all --- /usr/bin/make -f test/CMakeFiles/test_invalidsmarts.dir/build.make test/CMakeFiles/test_invalidsmarts.dir/depend --- test/CMakeFiles/test_invalidsmarts.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_invalidsmarts.dir/DependInfo.cmake Scanning dependencies of target test_invalidsmarts /usr/bin/make -f test/CMakeFiles/test_invalidsmarts.dir/build.make test/CMakeFiles/test_invalidsmarts.dir/build --- test/CMakeFiles/test_invalidsmarts.dir/invalidsmarts.o --- [ 92%] Building CXX object test/CMakeFiles/test_invalidsmarts.dir/invalidsmarts.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_invalidsmarts.dir/invalidsmarts.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/invalidsmarts.cpp --- test/CMakeFiles/test_inchiwrite.dir/all --- --- test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o --- [ 92%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/getinchi.cpp --- test/CMakeFiles/test_invalidsmarts.dir/all --- --- bin/test_invalidsmarts --- [ 93%] Linking CXX executable ../bin/test_invalidsmarts cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_invalidsmarts.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_invalidsmarts.dir/invalidsmarts.o -o ../bin/test_invalidsmarts ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 93%] Built target test_invalidsmarts --- test/CMakeFiles/test_mol.dir/all --- /usr/bin/make -f test/CMakeFiles/test_mol.dir/build.make test/CMakeFiles/test_mol.dir/depend --- test/CMakeFiles/test_mol.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_mol.dir/DependInfo.cmake Scanning dependencies of target test_mol /usr/bin/make -f test/CMakeFiles/test_mol.dir/build.make test/CMakeFiles/test_mol.dir/build --- test/CMakeFiles/test_mol.dir/mol.o --- [ 93%] Building CXX object test/CMakeFiles/test_mol.dir/mol.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_mol.dir/mol.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/mol.cpp --- test/CMakeFiles/test_inchiwrite.dir/all --- --- bin/test_inchiwrite --- [ 93%] Linking CXX executable ../bin/test_inchiwrite cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_inchiwrite.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_inchiwrite.dir/inchiwrite.o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -o ../bin/test_inchiwrite ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 93%] Built target test_inchiwrite --- test/CMakeFiles/test_implicitH.dir/all --- /usr/bin/make -f test/CMakeFiles/test_implicitH.dir/build.make test/CMakeFiles/test_implicitH.dir/depend --- test/CMakeFiles/test_implicitH.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_implicitH.dir/DependInfo.cmake Scanning dependencies of target test_implicitH /usr/bin/make -f test/CMakeFiles/test_implicitH.dir/build.make test/CMakeFiles/test_implicitH.dir/build --- test/CMakeFiles/test_implicitH.dir/implicitHtest.o --- [ 93%] Building CXX object test/CMakeFiles/test_implicitH.dir/implicitHtest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_implicitH.dir/implicitHtest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/implicitHtest.cpp --- test/CMakeFiles/test_lssr.dir/all --- --- bin/test_lssr --- [ 93%] Linking CXX executable ../bin/test_lssr cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_lssr.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_lssr.dir/lssrtest.o -o ../bin/test_lssr ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 93%] Built target test_lssr --- test/CMakeFiles/test_isomorphism.dir/all --- /usr/bin/make -f test/CMakeFiles/test_isomorphism.dir/build.make test/CMakeFiles/test_isomorphism.dir/depend --- test/CMakeFiles/test_isomorphism.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_isomorphism.dir/DependInfo.cmake Scanning dependencies of target test_isomorphism /usr/bin/make -f test/CMakeFiles/test_isomorphism.dir/build.make test/CMakeFiles/test_isomorphism.dir/build --- test/CMakeFiles/test_isomorphism.dir/isomorphismtest.o --- [ 93%] Building CXX object test/CMakeFiles/test_isomorphism.dir/isomorphismtest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_isomorphism.dir/isomorphismtest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/isomorphismtest.cpp --- test/CMakeFiles/test_shuffle.dir/all --- --- bin/test_shuffle --- [ 93%] Linking CXX executable ../bin/test_shuffle cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_shuffle.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_shuffle.dir/shuffletest.o -o ../bin/test_shuffle ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 93%] Built target test_shuffle --- test/CMakeFiles/test_spectrophore.dir/all --- /usr/bin/make -f test/CMakeFiles/test_spectrophore.dir/build.make test/CMakeFiles/test_spectrophore.dir/depend --- test/CMakeFiles/test_spectrophore.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_spectrophore.dir/DependInfo.cmake Scanning dependencies of target test_spectrophore /usr/bin/make -f test/CMakeFiles/test_spectrophore.dir/build.make test/CMakeFiles/test_spectrophore.dir/build --- test/CMakeFiles/test_spectrophore.dir/spectrophoretest.o --- [ 93%] Building CXX object test/CMakeFiles/test_spectrophore.dir/spectrophoretest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_spectrophore.dir/spectrophoretest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/spectrophoretest.cpp --- test/CMakeFiles/test_implicitH.dir/all --- --- bin/test_implicitH --- [ 94%] Linking CXX executable ../bin/test_implicitH cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_implicitH.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_implicitH.dir/implicitHtest.o -o ../bin/test_implicitH ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 94%] Built target test_implicitH --- test/CMakeFiles/test_charge-gasteiger.dir/all --- /usr/bin/make -f test/CMakeFiles/test_charge-gasteiger.dir/build.make test/CMakeFiles/test_charge-gasteiger.dir/depend --- test/CMakeFiles/test_charge-gasteiger.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_charge-gasteiger.dir/DependInfo.cmake Scanning dependencies of target test_charge-gasteiger /usr/bin/make -f test/CMakeFiles/test_charge-gasteiger.dir/build.make test/CMakeFiles/test_charge-gasteiger.dir/build --- test/CMakeFiles/test_charge-gasteiger.dir/charge-gasteiger.o --- [ 94%] Building CXX object test/CMakeFiles/test_charge-gasteiger.dir/charge-gasteiger.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_charge-gasteiger.dir/charge-gasteiger.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/charge-gasteiger.cpp --- test/CMakeFiles/test_mol.dir/all --- --- bin/test_mol --- [ 94%] Linking CXX executable ../bin/test_mol cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_mol.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_mol.dir/mol.o -o ../bin/test_mol ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 94%] Built target test_mol --- test/CMakeFiles/test_rotor.dir/all --- /usr/bin/make -f test/CMakeFiles/test_rotor.dir/build.make test/CMakeFiles/test_rotor.dir/depend --- test/CMakeFiles/test_rotor.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_rotor.dir/DependInfo.cmake Scanning dependencies of target test_rotor /usr/bin/make -f test/CMakeFiles/test_rotor.dir/build.make test/CMakeFiles/test_rotor.dir/build --- test/CMakeFiles/test_rotor.dir/rotortest.o --- [ 94%] Building CXX object test/CMakeFiles/test_rotor.dir/rotortest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_rotor.dir/rotortest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/rotortest.cpp --- test/CMakeFiles/test_isomorphism.dir/all --- --- bin/test_isomorphism --- [ 94%] Linking CXX executable ../bin/test_isomorphism cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_isomorphism.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_isomorphism.dir/isomorphismtest.o -o ../bin/test_isomorphism ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 94%] Built target test_isomorphism --- test/CMakeFiles/test_bond.dir/all --- /usr/bin/make -f test/CMakeFiles/test_bond.dir/build.make test/CMakeFiles/test_bond.dir/depend --- test/CMakeFiles/test_bond.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_bond.dir/DependInfo.cmake Scanning dependencies of target test_bond /usr/bin/make -f test/CMakeFiles/test_bond.dir/build.make test/CMakeFiles/test_bond.dir/build --- test/CMakeFiles/test_bond.dir/bond.o --- [ 95%] Building CXX object test/CMakeFiles/test_bond.dir/bond.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_bond.dir/bond.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/bond.cpp --- test/CMakeFiles/test_charge-gasteiger.dir/all --- --- bin/test_charge-gasteiger --- [ 95%] Linking CXX executable ../bin/test_charge-gasteiger cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_charge-gasteiger.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_charge-gasteiger.dir/charge-gasteiger.o -o ../bin/test_charge-gasteiger ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 95%] Built target test_charge-gasteiger --- test/CMakeFiles/test_charge-mmff94.dir/all --- /usr/bin/make -f test/CMakeFiles/test_charge-mmff94.dir/build.make test/CMakeFiles/test_charge-mmff94.dir/depend --- test/CMakeFiles/test_charge-mmff94.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_charge-mmff94.dir/DependInfo.cmake Scanning dependencies of target test_charge-mmff94 /usr/bin/make -f test/CMakeFiles/test_charge-mmff94.dir/build.make test/CMakeFiles/test_charge-mmff94.dir/build --- test/CMakeFiles/test_charge-mmff94.dir/charge-mmff94.o --- [ 96%] Building CXX object test/CMakeFiles/test_charge-mmff94.dir/charge-mmff94.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_charge-mmff94.dir/charge-mmff94.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/charge-mmff94.cpp --- test/CMakeFiles/test_spectrophore.dir/all --- --- bin/test_spectrophore --- [ 96%] Linking CXX executable ../bin/test_spectrophore cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_spectrophore.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_spectrophore.dir/spectrophoretest.o -o ../bin/test_spectrophore ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 96%] Built target test_spectrophore --- test/CMakeFiles/test_conversion.dir/all --- /usr/bin/make -f test/CMakeFiles/test_conversion.dir/build.make test/CMakeFiles/test_conversion.dir/depend --- test/CMakeFiles/test_conversion.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_conversion.dir/DependInfo.cmake Scanning dependencies of target test_conversion /usr/bin/make -f test/CMakeFiles/test_conversion.dir/build.make test/CMakeFiles/test_conversion.dir/build --- test/CMakeFiles/test_conversion.dir/conversion.o --- [ 96%] Building CXX object test/CMakeFiles/test_conversion.dir/conversion.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_conversion.dir/conversion.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/conversion.cpp --- test/CMakeFiles/test_stereo.dir/all --- --- bin/test_stereo --- [ 96%] Linking CXX executable ../bin/test_stereo cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_stereo.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_stereo.dir/stereotest.o -o ../bin/test_stereo ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 96%] Built target test_stereo --- test/CMakeFiles/test_datatest.dir/all --- /usr/bin/make -f test/CMakeFiles/test_datatest.dir/build.make test/CMakeFiles/test_datatest.dir/depend --- test/CMakeFiles/test_datatest.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_datatest.dir/DependInfo.cmake Scanning dependencies of target test_datatest /usr/bin/make -f test/CMakeFiles/test_datatest.dir/build.make test/CMakeFiles/test_datatest.dir/build --- test/CMakeFiles/test_datatest.dir/datatest.o --- [ 96%] Building CXX object test/CMakeFiles/test_datatest.dir/datatest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_datatest.dir/datatest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/datatest.cpp --- test/CMakeFiles/test_bond.dir/all --- --- bin/test_bond --- [ 96%] Linking CXX executable ../bin/test_bond cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_bond.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_bond.dir/bond.o -o ../bin/test_bond ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- test/CMakeFiles/test_rotor.dir/all --- --- bin/test_rotor --- [ 96%] Linking CXX executable ../bin/test_rotor cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_rotor.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_rotor.dir/rotortest.o -o ../bin/test_rotor ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- test/CMakeFiles/test_bond.dir/all --- [ 96%] Built target test_bond --- test/CMakeFiles/test_invalidsmiles.dir/all --- /usr/bin/make -f test/CMakeFiles/test_invalidsmiles.dir/build.make test/CMakeFiles/test_invalidsmiles.dir/depend --- test/CMakeFiles/test_rotor.dir/all --- [ 96%] Built target test_rotor --- test/CMakeFiles/test_iterators.dir/all --- /usr/bin/make -f test/CMakeFiles/test_iterators.dir/build.make test/CMakeFiles/test_iterators.dir/depend --- test/CMakeFiles/test_invalidsmiles.dir/all --- --- test/CMakeFiles/test_invalidsmiles.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_invalidsmiles.dir/DependInfo.cmake --- test/CMakeFiles/test_iterators.dir/all --- --- test/CMakeFiles/test_iterators.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_iterators.dir/DependInfo.cmake --- test/CMakeFiles/test_invalidsmiles.dir/all --- Scanning dependencies of target test_invalidsmiles --- test/CMakeFiles/test_iterators.dir/all --- Scanning dependencies of target test_iterators /usr/bin/make -f test/CMakeFiles/test_iterators.dir/build.make test/CMakeFiles/test_iterators.dir/build --- test/CMakeFiles/test_invalidsmiles.dir/all --- /usr/bin/make -f test/CMakeFiles/test_invalidsmiles.dir/build.make test/CMakeFiles/test_invalidsmiles.dir/build --- test/CMakeFiles/test_iterators.dir/all --- --- test/CMakeFiles/test_iterators.dir/iterators.o --- --- test/CMakeFiles/test_invalidsmiles.dir/all --- --- test/CMakeFiles/test_invalidsmiles.dir/invalidsmiles.o --- [ 96%] Building CXX object test/CMakeFiles/test_invalidsmiles.dir/invalidsmiles.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_invalidsmiles.dir/invalidsmiles.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/invalidsmiles.cpp --- test/CMakeFiles/test_iterators.dir/all --- [ 96%] Building CXX object test/CMakeFiles/test_iterators.dir/iterators.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_iterators.dir/iterators.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/iterators.cpp --- test/CMakeFiles/test_datatest.dir/all --- --- bin/test_datatest --- [ 97%] Linking CXX executable ../bin/test_datatest cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_datatest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_datatest.dir/datatest.o -o ../bin/test_datatest ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 97%] Built target test_datatest --- test/CMakeFiles/test_ffgaff.dir/all --- /usr/bin/make -f test/CMakeFiles/test_ffgaff.dir/build.make test/CMakeFiles/test_ffgaff.dir/depend --- test/CMakeFiles/test_ffgaff.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_ffgaff.dir/DependInfo.cmake Scanning dependencies of target test_ffgaff /usr/bin/make -f test/CMakeFiles/test_ffgaff.dir/build.make test/CMakeFiles/test_ffgaff.dir/build --- test/CMakeFiles/test_ffgaff.dir/ffgaff.o --- [ 97%] Building CXX object test/CMakeFiles/test_ffgaff.dir/ffgaff.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_ffgaff.dir/ffgaff.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/ffgaff.cpp --- test/CMakeFiles/test_conversion.dir/all --- --- bin/test_conversion --- [ 97%] Linking CXX executable ../bin/test_conversion cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_conversion.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_conversion.dir/conversion.o -o ../bin/test_conversion ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 97%] Built target test_conversion --- test/CMakeFiles/test_ffghemical.dir/all --- /usr/bin/make -f test/CMakeFiles/test_ffghemical.dir/build.make test/CMakeFiles/test_ffghemical.dir/depend --- test/CMakeFiles/test_ffghemical.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_ffghemical.dir/DependInfo.cmake Scanning dependencies of target test_ffghemical /usr/bin/make -f test/CMakeFiles/test_ffghemical.dir/build.make test/CMakeFiles/test_ffghemical.dir/build --- test/CMakeFiles/test_ffghemical.dir/ffghemical.o --- [ 97%] Building CXX object test/CMakeFiles/test_ffghemical.dir/ffghemical.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_ffghemical.dir/ffghemical.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/ffghemical.cpp --- test/CMakeFiles/test_invalidsmiles.dir/all --- --- bin/test_invalidsmiles --- [ 97%] Linking CXX executable ../bin/test_invalidsmiles cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_invalidsmiles.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_invalidsmiles.dir/invalidsmiles.o -o ../bin/test_invalidsmiles ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 97%] Built target test_invalidsmiles --- test/CMakeFiles/test_ffmmff94.dir/all --- /usr/bin/make -f test/CMakeFiles/test_ffmmff94.dir/build.make test/CMakeFiles/test_ffmmff94.dir/depend --- test/CMakeFiles/test_ffmmff94.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_ffmmff94.dir/DependInfo.cmake Scanning dependencies of target test_ffmmff94 /usr/bin/make -f test/CMakeFiles/test_ffmmff94.dir/build.make test/CMakeFiles/test_ffmmff94.dir/build --- test/CMakeFiles/test_ffmmff94.dir/ffmmff94.o --- [ 97%] Building CXX object test/CMakeFiles/test_ffmmff94.dir/ffmmff94.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_ffmmff94.dir/ffmmff94.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/ffmmff94.cpp --- test/CMakeFiles/test_charge-mmff94.dir/all --- --- bin/test_charge-mmff94 --- [ 97%] Linking CXX executable ../bin/test_charge-mmff94 cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_charge-mmff94.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_charge-mmff94.dir/charge-mmff94.o -o ../bin/test_charge-mmff94 ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 97%] Built target test_charge-mmff94 --- test/CMakeFiles/test_smartstest.dir/all --- /usr/bin/make -f test/CMakeFiles/test_smartstest.dir/build.make test/CMakeFiles/test_smartstest.dir/depend --- test/CMakeFiles/test_smartstest.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_smartstest.dir/DependInfo.cmake --- test/CMakeFiles/test_iterators.dir/all --- --- bin/test_iterators --- [ 98%] Linking CXX executable ../bin/test_iterators cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_iterators.dir/link.txt --verbose=1 --- test/CMakeFiles/test_smartstest.dir/all --- Scanning dependencies of target test_smartstest /usr/bin/make -f test/CMakeFiles/test_smartstest.dir/build.make test/CMakeFiles/test_smartstest.dir/build --- test/CMakeFiles/test_iterators.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_iterators.dir/iterators.o -o ../bin/test_iterators ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- test/CMakeFiles/test_smartstest.dir/all --- --- test/CMakeFiles/test_smartstest.dir/smartstest.o --- [ 98%] Building CXX object test/CMakeFiles/test_smartstest.dir/smartstest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_smartstest.dir/smartstest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/smartstest.cpp --- test/CMakeFiles/test_iterators.dir/all --- [ 98%] Built target test_iterators --- test/CMakeFiles/test_ffuff.dir/all --- /usr/bin/make -f test/CMakeFiles/test_ffuff.dir/build.make test/CMakeFiles/test_ffuff.dir/depend --- test/CMakeFiles/test_ffuff.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_ffuff.dir/DependInfo.cmake Scanning dependencies of target test_ffuff /usr/bin/make -f test/CMakeFiles/test_ffuff.dir/build.make test/CMakeFiles/test_ffuff.dir/build --- test/CMakeFiles/test_ffuff.dir/ffuff.o --- [ 98%] Building CXX object test/CMakeFiles/test_ffuff.dir/ffuff.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_ffuff.dir/ffuff.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/ffuff.cpp --- test/CMakeFiles/test_ffgaff.dir/all --- --- bin/test_ffgaff --- [ 98%] Linking CXX executable ../bin/test_ffgaff cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_ffgaff.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_ffgaff.dir/ffgaff.o -o ../bin/test_ffgaff ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 98%] Built target test_ffgaff --- test/CMakeFiles/test_formalcharge.dir/all --- /usr/bin/make -f test/CMakeFiles/test_formalcharge.dir/build.make test/CMakeFiles/test_formalcharge.dir/depend --- test/CMakeFiles/test_formalcharge.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_formalcharge.dir/DependInfo.cmake Scanning dependencies of target test_formalcharge /usr/bin/make -f test/CMakeFiles/test_formalcharge.dir/build.make test/CMakeFiles/test_formalcharge.dir/build --- test/CMakeFiles/test_formalcharge.dir/formalcharge.o --- [ 98%] Building CXX object test/CMakeFiles/test_formalcharge.dir/formalcharge.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_formalcharge.dir/formalcharge.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/formalcharge.cpp --- test/CMakeFiles/test_ffghemical.dir/all --- --- bin/test_ffghemical --- [ 98%] Linking CXX executable ../bin/test_ffghemical cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_ffghemical.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_ffghemical.dir/ffghemical.o -o ../bin/test_ffghemical ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 98%] Built target test_ffghemical --- test/CMakeFiles/test_cistrans.dir/all --- /usr/bin/make -f test/CMakeFiles/test_cistrans.dir/build.make test/CMakeFiles/test_cistrans.dir/depend --- test/CMakeFiles/test_cistrans.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_cistrans.dir/DependInfo.cmake Scanning dependencies of target test_cistrans /usr/bin/make -f test/CMakeFiles/test_cistrans.dir/build.make test/CMakeFiles/test_cistrans.dir/build --- test/CMakeFiles/test_cistrans.dir/cistranstest.o --- [ 98%] Building CXX object test/CMakeFiles/test_cistrans.dir/cistranstest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_cistrans.dir/cistranstest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/cistranstest.cpp --- test/CMakeFiles/test_ffuff.dir/all --- --- bin/test_ffuff --- [ 98%] Linking CXX executable ../bin/test_ffuff cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_ffuff.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_ffuff.dir/ffuff.o -o ../bin/test_ffuff ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 98%] Built target test_ffuff --- test/CMakeFiles/test_formula.dir/all --- /usr/bin/make -f test/CMakeFiles/test_formula.dir/build.make test/CMakeFiles/test_formula.dir/depend --- test/CMakeFiles/test_formula.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_formula.dir/DependInfo.cmake Scanning dependencies of target test_formula /usr/bin/make -f test/CMakeFiles/test_formula.dir/build.make test/CMakeFiles/test_formula.dir/build --- test/CMakeFiles/test_formula.dir/formula.o --- [ 98%] Building CXX object test/CMakeFiles/test_formula.dir/formula.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_formula.dir/formula.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/formula.cpp --- test/CMakeFiles/test_ffmmff94.dir/all --- --- bin/test_ffmmff94 --- [ 99%] Linking CXX executable ../bin/test_ffmmff94 cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_ffmmff94.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_ffmmff94.dir/ffmmff94.o -o ../bin/test_ffmmff94 ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 99%] Built target test_ffmmff94 --- test/CMakeFiles/test_smiles.dir/all --- /usr/bin/make -f test/CMakeFiles/test_smiles.dir/build.make test/CMakeFiles/test_smiles.dir/depend --- test/CMakeFiles/test_smiles.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_smiles.dir/DependInfo.cmake Scanning dependencies of target test_smiles /usr/bin/make -f test/CMakeFiles/test_smiles.dir/build.make test/CMakeFiles/test_smiles.dir/build --- test/CMakeFiles/test_smiles.dir/smilestest.o --- [ 99%] Building CXX object test/CMakeFiles/test_smiles.dir/smilestest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_smiles.dir/smilestest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/smilestest.cpp --- test/CMakeFiles/test_formalcharge.dir/all --- --- bin/test_formalcharge --- [ 99%] Linking CXX executable ../bin/test_formalcharge cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_formalcharge.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_formalcharge.dir/formalcharge.o -o ../bin/test_formalcharge ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 99%] Built target test_formalcharge --- test/CMakeFiles/test_graphsym.dir/all --- /usr/bin/make -f test/CMakeFiles/test_graphsym.dir/build.make test/CMakeFiles/test_graphsym.dir/depend --- test/CMakeFiles/test_graphsym.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_graphsym.dir/DependInfo.cmake Scanning dependencies of target test_graphsym /usr/bin/make -f test/CMakeFiles/test_graphsym.dir/build.make test/CMakeFiles/test_graphsym.dir/build --- test/CMakeFiles/test_graphsym.dir/graphsymtest.o --- [ 99%] Building CXX object test/CMakeFiles/test_graphsym.dir/graphsymtest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_graphsym.dir/graphsymtest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/graphsymtest.cpp --- test/CMakeFiles/test_smartstest.dir/all --- --- bin/test_smartstest --- [ 99%] Linking CXX executable ../bin/test_smartstest cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_smartstest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_smartstest.dir/smartstest.o -o ../bin/test_smartstest ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 99%] Built target test_smartstest --- test/CMakeFiles/test_internalcoord.dir/all --- /usr/bin/make -f test/CMakeFiles/test_internalcoord.dir/build.make test/CMakeFiles/test_internalcoord.dir/depend --- test/CMakeFiles/test_internalcoord.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_internalcoord.dir/DependInfo.cmake Scanning dependencies of target test_internalcoord /usr/bin/make -f test/CMakeFiles/test_internalcoord.dir/build.make test/CMakeFiles/test_internalcoord.dir/build --- test/CMakeFiles/test_internalcoord.dir/internalcoord.o --- [ 99%] Building CXX object test/CMakeFiles/test_internalcoord.dir/internalcoord.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_internalcoord.dir/internalcoord.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/internalcoord.cpp --- test/CMakeFiles/test_cistrans.dir/all --- --- bin/test_cistrans --- [ 99%] Linking CXX executable ../bin/test_cistrans cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_cistrans.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_cistrans.dir/cistranstest.o -o ../bin/test_cistrans ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 99%] Built target test_cistrans --- test/CMakeFiles/test_ringtest.dir/all --- /usr/bin/make -f test/CMakeFiles/test_ringtest.dir/build.make test/CMakeFiles/test_ringtest.dir/depend --- test/CMakeFiles/test_ringtest.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_ringtest.dir/DependInfo.cmake Scanning dependencies of target test_ringtest /usr/bin/make -f test/CMakeFiles/test_ringtest.dir/build.make test/CMakeFiles/test_ringtest.dir/build --- test/CMakeFiles/test_ringtest.dir/ringtest.o --- [ 99%] Building CXX object test/CMakeFiles/test_ringtest.dir/ringtest.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_ringtest.dir/ringtest.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/ringtest.cpp --- test/CMakeFiles/test_formula.dir/all --- --- bin/test_formula --- [ 99%] Linking CXX executable ../bin/test_formula cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_formula.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_formula.dir/formula.o -o ../bin/test_formula ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 99%] Built target test_formula --- test/CMakeFiles/test_cansmi.dir/all --- /usr/bin/make -f test/CMakeFiles/test_cansmi.dir/build.make test/CMakeFiles/test_cansmi.dir/depend --- test/CMakeFiles/test_cansmi.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_cansmi.dir/DependInfo.cmake Scanning dependencies of target test_cansmi /usr/bin/make -f test/CMakeFiles/test_cansmi.dir/build.make test/CMakeFiles/test_cansmi.dir/build --- test/CMakeFiles/test_cansmi.dir/cansmi.o --- [ 99%] Building CXX object test/CMakeFiles/test_cansmi.dir/cansmi.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_cansmi.dir/cansmi.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/cansmi.cpp --- test/CMakeFiles/test_internalcoord.dir/all --- --- bin/test_internalcoord --- [ 99%] Linking CXX executable ../bin/test_internalcoord cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_internalcoord.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_internalcoord.dir/internalcoord.o -o ../bin/test_internalcoord ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 99%] Built target test_internalcoord --- test/CMakeFiles/test_logp_psa.dir/all --- /usr/bin/make -f test/CMakeFiles/test_logp_psa.dir/build.make test/CMakeFiles/test_logp_psa.dir/depend --- test/CMakeFiles/test_logp_psa.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_logp_psa.dir/DependInfo.cmake Scanning dependencies of target test_logp_psa /usr/bin/make -f test/CMakeFiles/test_logp_psa.dir/build.make test/CMakeFiles/test_logp_psa.dir/build --- test/CMakeFiles/test_logp_psa.dir/logp_psa.o --- [ 99%] Building CXX object test/CMakeFiles/test_logp_psa.dir/logp_psa.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_logp_psa.dir/logp_psa.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/logp_psa.cpp --- test/CMakeFiles/test_graphsym.dir/all --- --- bin/test_graphsym --- [ 99%] Linking CXX executable ../bin/test_graphsym --- test/CMakeFiles/test_cansmi.dir/all --- --- bin/test_cansmi --- --- test/CMakeFiles/test_graphsym.dir/all --- cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_graphsym.dir/link.txt --verbose=1 --- test/CMakeFiles/test_cansmi.dir/all --- [ 99%] Linking CXX executable ../bin/test_cansmi --- test/CMakeFiles/test_graphsym.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_graphsym.dir/graphsymtest.o -o ../bin/test_graphsym ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- test/CMakeFiles/test_cansmi.dir/all --- cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_cansmi.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_cansmi.dir/cansmi.o -o ../bin/test_cansmi ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- test/CMakeFiles/test_graphsym.dir/all --- [ 99%] Built target test_graphsym --- test/CMakeFiles/test_residue.dir/all --- /usr/bin/make -f test/CMakeFiles/test_residue.dir/build.make test/CMakeFiles/test_residue.dir/depend --- test/CMakeFiles/test_residue.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_residue.dir/DependInfo.cmake --- test/CMakeFiles/test_cansmi.dir/all --- [ 99%] Built target test_cansmi --- scripts/CMakeFiles/bindings_python.dir/all --- --- test/CMakeFiles/test_residue.dir/all --- Scanning dependencies of target test_residue --- scripts/CMakeFiles/bindings_python.dir/all --- /usr/bin/make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/depend --- test/CMakeFiles/test_residue.dir/all --- /usr/bin/make -f test/CMakeFiles/test_residue.dir/build.make test/CMakeFiles/test_residue.dir/build --- scripts/CMakeFiles/bindings_python.dir/all --- --- scripts/CMakeFiles/bindings_python.dir/depend --- cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/scripts /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/scripts /wrkdirs/science/openbabel/.build/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake --- test/CMakeFiles/test_logp_psa.dir/all --- --- bin/test_logp_psa --- --- test/CMakeFiles/test_residue.dir/all --- --- test/CMakeFiles/test_residue.dir/residue.o --- --- test/CMakeFiles/test_logp_psa.dir/all --- [ 99%] Linking CXX executable ../bin/test_logp_psa cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_logp_psa.dir/link.txt --verbose=1 --- test/CMakeFiles/test_residue.dir/all --- [ 99%] Building CXX object test/CMakeFiles/test_residue.dir/residue.o cd /wrkdirs/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -DTESTDATADIR="\"/wrkdirs/science/openbabel/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/wrkdirs/science/openbabel/.build/lib/\"" -o CMakeFiles/test_residue.dir/residue.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/test/residue.cpp --- test/CMakeFiles/test_logp_psa.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_logp_psa.dir/logp_psa.o -o ../bin/test_logp_psa ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib --- scripts/CMakeFiles/bindings_python.dir/all --- Scanning dependencies of target bindings_python /usr/bin/make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/build --- scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o --- [ 99%] Building CXX object scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o cd /wrkdirs/science/openbabel/.build/scripts && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dbindings_python_EXPORTS -I/wrkdirs/science/openbabel/.build/include -I/wrkdirs/science/openbabel/openbabel-2.3.2/data -I/wrkdirs/science/openbabel/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/usr/local/include/python2.7 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o -c /wrkdirs/science/openbabel/openbabel-2.3.2/scripts/python/openbabel-python.cpp --- test/CMakeFiles/test_logp_psa.dir/all --- [ 99%] Built target test_logp_psa --- test/CMakeFiles/test_ringtest.dir/all --- --- bin/test_ringtest --- [ 99%] Linking CXX executable ../bin/test_ringtest cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_ringtest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_ringtest.dir/ringtest.o -o ../bin/test_ringtest ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 99%] Built target test_ringtest --- test/CMakeFiles/test_smiles.dir/all --- --- bin/test_smiles --- [ 99%] Linking CXX executable ../bin/test_smiles cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_smiles.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_smiles.dir/smilestest.o -o ../bin/test_smiles ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [ 99%] Built target test_smiles --- test/CMakeFiles/test_residue.dir/all --- --- bin/test_residue --- [100%] Linking CXX executable ../bin/test_residue cd /wrkdirs/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_residue.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG CMakeFiles/test_residue.dir/residue.o -o ../bin/test_residue ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/wrkdirs/science/openbabel/.build/lib [100%] Built target test_residue --- scripts/CMakeFiles/bindings_python.dir/all --- --- lib/_openbabel.so --- [100%] Linking CXX shared module ../lib/_openbabel.so cd /wrkdirs/science/openbabel/.build/scripts && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/bindings_python.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -O2 -DNDEBUG -shared -o ../lib/_openbabel.so CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o /usr/local/lib/libpython2.7.so ../lib/libopenbabel.so.4.0.2 -lm -ldl -lz -Wl,-rpath,/usr/local/lib:/wrkdirs/science/openbabel/.build/lib [100%] Built target bindings_python /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/science/openbabel/.build/CMakeFiles 0 =========================================================================== =================================================== ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =================================================== ===> Staging for openbabel-2.3.2_2 ===> Generating temporary packing list /usr/local/bin/cmake -H/wrkdirs/science/openbabel/openbabel-2.3.2 -B/wrkdirs/science/openbabel/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/science/openbabel/.build/CMakeFiles /wrkdirs/science/openbabel/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src /wrkdirs/science/openbabel/.build/src/CMakeFiles/openbabel.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build [ 11%] Built target openbabel /usr/bin/make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src /wrkdirs/science/openbabel/.build/src/CMakeFiles/plugin_fingerprints.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/build [ 11%] Built target plugin_fingerprints /usr/bin/make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src /wrkdirs/science/openbabel/.build/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build [ 12%] Built target plugin_charges /usr/bin/make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src /wrkdirs/science/openbabel/.build/src/CMakeFiles/plugin_forcefields.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/build [ 13%] Built target plugin_forcefields /usr/bin/make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src /wrkdirs/science/openbabel/.build/src/CMakeFiles/plugin_descriptors.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/build [ 15%] Built target plugin_descriptors /usr/bin/make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src /wrkdirs/science/openbabel/.build/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build [ 19%] Built target plugin_ops /usr/bin/make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats/libinchi /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats/libinchi /wrkdirs/science/openbabel/.build/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake /usr/bin/make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/build [ 26%] Built target inchi /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build [ 27%] Built target xmlformat /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build [ 27%] Built target pubchem /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build [ 28%] Built target cdxmlformat /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build [ 29%] Built target chemkinformat /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build [ 29%] Built target CSRformat /usr/bin/make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build [ 30%] Built target PQSformat /usr/bin/make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 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-f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build [ 32%] Built target cmlreactformat /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build 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src/formats/CMakeFiles/jaguarformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build [ 34%] Built target jaguarformat /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats 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/wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build [ 35%] Built target nwchemformat /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build [ 35%] Built target mdlformat /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build [ 36%] Built target molreport /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 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src/formats/CMakeFiles/gamessformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build [ 40%] Built target gamessformat /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats 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src/formats/CMakeFiles/smilesformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build [ 44%] Built target smilesformat /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats 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/wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build [ 45%] Built target MNAformat /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build [ 45%] Built target chemdrawct /usr/bin/make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build [ 45%] Built target textformat /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build [ 45%] Built target opendxformat /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build [ 45%] Built target cacaoformat /usr/bin/make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build [ 45%] Built target pngformat /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build [ 46%] Built target MCDLformat /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build [ 46%] Built target alchemyformat /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build [ 46%] Built target svgformat /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build [ 46%] Built target viewmolformat /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build [ 47%] Built target acesformat /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build [ 47%] Built target qchemformat /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build [ 48%] Built target titleformat /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build [ 48%] Built target asciiformat /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build [ 48%] Built target cccformat /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build [ 49%] Built target gulpformat /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build [ 50%] Built target adfformat /usr/bin/make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake /usr/bin/make -f 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src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build [ 53%] Built target boxformat /usr/bin/make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats 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/wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build [ 57%] Built target pwscfformat /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build [ 58%] Built target pdbformat /usr/bin/make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build [ 59%] Built target cssrformat /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 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/usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build [ 59%] Built target dlpolyformat /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build 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src/formats/CMakeFiles/fingerprintformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build [ 61%] Built target fingerprintformat /usr/bin/make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats 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/wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build [ 70%] Built target pdbqtformat /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build [ 70%] Built target molproformat /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build [ 71%] Built target posformat /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build [ 72%] Built target shelxformat /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/src/formats /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/src/formats /wrkdirs/science/openbabel/.build/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build [ 73%] Built target unichemformat /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" 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tools/CMakeFiles/obrms.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obrms.dir/DependInfo.cmake /usr/bin/make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/build [ 79%] Built target obrms /usr/bin/make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/tools /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/tools /wrkdirs/science/openbabel/.build/tools/CMakeFiles/obconformer.dir/DependInfo.cmake /usr/bin/make -f tools/CMakeFiles/obconformer.dir/build.make 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test/CMakeFiles/test_stereoperception.dir/build.make test/CMakeFiles/test_stereoperception.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_stereoperception.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_stereoperception.dir/build.make test/CMakeFiles/test_stereoperception.dir/build [ 85%] Built target test_stereoperception /usr/bin/make -f test/CMakeFiles/test_canonstable.dir/build.make test/CMakeFiles/test_canonstable.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test 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/usr/bin/make -f test/CMakeFiles/test_atom.dir/build.make test/CMakeFiles/test_atom.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_atom.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_atom.dir/build.make test/CMakeFiles/test_atom.dir/build [ 87%] Built target test_atom /usr/bin/make -f test/CMakeFiles/test_smartsparse.dir/build.make test/CMakeFiles/test_smartsparse.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_smartsparse.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_smartsparse.dir/build.make test/CMakeFiles/test_smartsparse.dir/build [ 88%] Built target test_smartsparse /usr/bin/make -f test/CMakeFiles/test_math.dir/build.make test/CMakeFiles/test_math.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_math.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_math.dir/build.make test/CMakeFiles/test_math.dir/build [ 89%] Built target test_math /usr/bin/make -f test/CMakeFiles/test_tetranonplanar.dir/build.make test/CMakeFiles/test_tetranonplanar.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_tetranonplanar.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_tetranonplanar.dir/build.make test/CMakeFiles/test_tetranonplanar.dir/build [ 90%] Built target test_tetranonplanar /usr/bin/make -f test/CMakeFiles/test_builder.dir/build.make test/CMakeFiles/test_builder.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_builder.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_builder.dir/build.make test/CMakeFiles/test_builder.dir/build [ 90%] Built target test_builder /usr/bin/make -f test/CMakeFiles/test_squareplanar.dir/build.make test/CMakeFiles/test_squareplanar.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_squareplanar.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_squareplanar.dir/build.make test/CMakeFiles/test_squareplanar.dir/build [ 90%] Built target test_squareplanar /usr/bin/make -f test/CMakeFiles/test_automorphism.dir/build.make test/CMakeFiles/test_automorphism.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_automorphism.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_automorphism.dir/build.make test/CMakeFiles/test_automorphism.dir/build [ 90%] Built target test_automorphism /usr/bin/make -f test/CMakeFiles/test_tetrahedral.dir/build.make test/CMakeFiles/test_tetrahedral.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_tetrahedral.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_tetrahedral.dir/build.make test/CMakeFiles/test_tetrahedral.dir/build [ 90%] Built target test_tetrahedral /usr/bin/make -f test/CMakeFiles/test_shuffle.dir/build.make test/CMakeFiles/test_shuffle.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_shuffle.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_shuffle.dir/build.make test/CMakeFiles/test_shuffle.dir/build [ 90%] Built target test_shuffle /usr/bin/make -f test/CMakeFiles/test_canonconsistent.dir/build.make test/CMakeFiles/test_canonconsistent.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_canonconsistent.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_canonconsistent.dir/build.make test/CMakeFiles/test_canonconsistent.dir/build [ 90%] Built target test_canonconsistent /usr/bin/make -f test/CMakeFiles/test_format.dir/build.make test/CMakeFiles/test_format.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_format.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_format.dir/build.make test/CMakeFiles/test_format.dir/build [ 91%] Built target test_format /usr/bin/make -f test/CMakeFiles/test_lssr.dir/build.make test/CMakeFiles/test_lssr.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_lssr.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_lssr.dir/build.make test/CMakeFiles/test_lssr.dir/build [ 91%] Built target test_lssr /usr/bin/make -f test/CMakeFiles/test_stereo.dir/build.make test/CMakeFiles/test_stereo.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_stereo.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_stereo.dir/build.make test/CMakeFiles/test_stereo.dir/build [ 92%] Built target test_stereo /usr/bin/make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/build [ 92%] Built target test_inchiwrite /usr/bin/make -f test/CMakeFiles/test_invalidsmarts.dir/build.make test/CMakeFiles/test_invalidsmarts.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_invalidsmarts.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_invalidsmarts.dir/build.make test/CMakeFiles/test_invalidsmarts.dir/build [ 93%] Built target test_invalidsmarts /usr/bin/make -f test/CMakeFiles/test_mol.dir/build.make test/CMakeFiles/test_mol.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_mol.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_mol.dir/build.make test/CMakeFiles/test_mol.dir/build [ 93%] Built target test_mol /usr/bin/make -f test/CMakeFiles/test_implicitH.dir/build.make test/CMakeFiles/test_implicitH.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_implicitH.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_implicitH.dir/build.make test/CMakeFiles/test_implicitH.dir/build [ 94%] Built target test_implicitH /usr/bin/make -f test/CMakeFiles/test_isomorphism.dir/build.make test/CMakeFiles/test_isomorphism.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_isomorphism.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_isomorphism.dir/build.make test/CMakeFiles/test_isomorphism.dir/build [ 94%] Built target test_isomorphism /usr/bin/make -f test/CMakeFiles/test_spectrophore.dir/build.make test/CMakeFiles/test_spectrophore.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_spectrophore.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_spectrophore.dir/build.make test/CMakeFiles/test_spectrophore.dir/build [ 94%] Built target test_spectrophore /usr/bin/make -f test/CMakeFiles/test_charge-gasteiger.dir/build.make test/CMakeFiles/test_charge-gasteiger.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_charge-gasteiger.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_charge-gasteiger.dir/build.make test/CMakeFiles/test_charge-gasteiger.dir/build [ 94%] Built target test_charge-gasteiger /usr/bin/make -f test/CMakeFiles/test_rotor.dir/build.make test/CMakeFiles/test_rotor.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_rotor.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_rotor.dir/build.make test/CMakeFiles/test_rotor.dir/build [ 94%] Built target test_rotor /usr/bin/make -f test/CMakeFiles/test_bond.dir/build.make test/CMakeFiles/test_bond.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_bond.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_bond.dir/build.make test/CMakeFiles/test_bond.dir/build [ 95%] Built target test_bond /usr/bin/make -f test/CMakeFiles/test_charge-mmff94.dir/build.make test/CMakeFiles/test_charge-mmff94.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_charge-mmff94.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_charge-mmff94.dir/build.make test/CMakeFiles/test_charge-mmff94.dir/build [ 96%] Built target test_charge-mmff94 /usr/bin/make -f test/CMakeFiles/test_conversion.dir/build.make test/CMakeFiles/test_conversion.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_conversion.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_conversion.dir/build.make test/CMakeFiles/test_conversion.dir/build [ 96%] Built target test_conversion /usr/bin/make -f test/CMakeFiles/test_datatest.dir/build.make test/CMakeFiles/test_datatest.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_datatest.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_datatest.dir/build.make test/CMakeFiles/test_datatest.dir/build [ 97%] Built target test_datatest /usr/bin/make -f test/CMakeFiles/test_invalidsmiles.dir/build.make test/CMakeFiles/test_invalidsmiles.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_invalidsmiles.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_invalidsmiles.dir/build.make test/CMakeFiles/test_invalidsmiles.dir/build [ 97%] Built target test_invalidsmiles /usr/bin/make -f test/CMakeFiles/test_iterators.dir/build.make test/CMakeFiles/test_iterators.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_iterators.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_iterators.dir/build.make test/CMakeFiles/test_iterators.dir/build [ 98%] Built target test_iterators /usr/bin/make -f test/CMakeFiles/test_ffgaff.dir/build.make test/CMakeFiles/test_ffgaff.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_ffgaff.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_ffgaff.dir/build.make test/CMakeFiles/test_ffgaff.dir/build [ 98%] Built target test_ffgaff /usr/bin/make -f test/CMakeFiles/test_ffghemical.dir/build.make test/CMakeFiles/test_ffghemical.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_ffghemical.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_ffghemical.dir/build.make test/CMakeFiles/test_ffghemical.dir/build [ 98%] Built target test_ffghemical /usr/bin/make -f test/CMakeFiles/test_ffmmff94.dir/build.make test/CMakeFiles/test_ffmmff94.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_ffmmff94.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_ffmmff94.dir/build.make test/CMakeFiles/test_ffmmff94.dir/build [ 99%] Built target test_ffmmff94 /usr/bin/make -f test/CMakeFiles/test_smartstest.dir/build.make test/CMakeFiles/test_smartstest.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_smartstest.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_smartstest.dir/build.make test/CMakeFiles/test_smartstest.dir/build [ 99%] Built target test_smartstest /usr/bin/make -f test/CMakeFiles/test_ffuff.dir/build.make test/CMakeFiles/test_ffuff.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_ffuff.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_ffuff.dir/build.make test/CMakeFiles/test_ffuff.dir/build [ 99%] Built target test_ffuff /usr/bin/make -f test/CMakeFiles/test_formalcharge.dir/build.make test/CMakeFiles/test_formalcharge.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_formalcharge.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_formalcharge.dir/build.make test/CMakeFiles/test_formalcharge.dir/build [ 99%] Built target test_formalcharge /usr/bin/make -f test/CMakeFiles/test_cistrans.dir/build.make test/CMakeFiles/test_cistrans.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_cistrans.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_cistrans.dir/build.make test/CMakeFiles/test_cistrans.dir/build [ 99%] Built target test_cistrans /usr/bin/make -f test/CMakeFiles/test_formula.dir/build.make test/CMakeFiles/test_formula.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_formula.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_formula.dir/build.make test/CMakeFiles/test_formula.dir/build [ 99%] Built target test_formula /usr/bin/make -f test/CMakeFiles/test_smiles.dir/build.make test/CMakeFiles/test_smiles.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_smiles.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/test_smiles.dir/build.make test/CMakeFiles/test_smiles.dir/build [ 99%] Built target test_smiles /usr/bin/make -f test/CMakeFiles/test_graphsym.dir/build.make test/CMakeFiles/test_graphsym.dir/depend cd /wrkdirs/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/science/openbabel/openbabel-2.3.2 /wrkdirs/science/openbabel/openbabel-2.3.2/test /wrkdirs/science/openbabel/.build /wrkdirs/science/openbabel/.build/test /wrkdirs/science/openbabel/.build/test/CMakeFiles/test_graphsym.dir/DependInfo.cmake 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